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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 2302 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 6kgx:V2 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1202 6kgx:V3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1203 6kgx:V3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1204 6kgx:V3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1205 6kgx:V3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1206 6kgx:V4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1207 6kgx:V4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1208 6kgx:V4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1209 6kgx:V6 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1210 6kgx:V6 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1211 6kgx:V6 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1212 6kgx:V6 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1213 6kgx:V7 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1214 6kgx:V7 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1215 6kgx:V7 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1216 6kgx:V8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1217 6kgx:V8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1218 6kgx:V8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1219 6kgx:V9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1220 6kgx:V9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1221 6kgx:V9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1222 6kgx:VA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1223 6kgx:VA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1224 6kgx:VA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1225 6kgx:VB (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1226 6kgx:VB (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1227 6kgx:VB (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1228 6kgx:VB (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1229 6kgx:VD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1230 6kgx:VD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1231 6kgx:VD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1232 6kgx:VD (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1233 6kgx:VE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1234 6kgx:VE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1235 6kgx:VE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1236 6kgx:VE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1237 6kgx:VF (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1238 6kgx:VF (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1239 6kgx:VF (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1240 6kgx:VG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1241 6kgx:VG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1242 6kgx:VG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1243 6kgx:VG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1244 6kgx:VI (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1245 6kgx:VI (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1246 6kgx:VI (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1247 6kgx:VI (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1248 6kgx:VJ (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1249 6kgx:VJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1250 6kgx:W1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1251 6kgx:W1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1252 6kgx:W1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1253 6kgx:W1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1254 6kgx:W2 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1255 6kgx:W2 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1256 6kgx:W2 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1257 6kgx:W3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1258 6kgx:W3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1259 6kgx:W3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1260 6kgx:W4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1261 6kgx:W4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1262 6kgx:W4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1263 6kgx:W4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1264 6kgx:W6 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1265 6kgx:W6 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1266 6kgx:W6 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1267 6kgx:W6 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    1268 6kgx:W7 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1269 6kgx:W7 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1270 6kgx:W7 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1271 6kgx:W8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1272 6kgx:W8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1273 6kgx:W8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1274 6kgx:W9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1275 6kgx:W9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1276 6kgx:W9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1277 6kgx:W9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1278 6kgx:WA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1279 6kgx:WA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1280 6kgx:WA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1281 6kgx:WB (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1282 6kgx:WB (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1283 6kgx:WB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1284 6kgx:WB (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    1285 6kgx:WD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1286 6kgx:WD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1287 6kgx:WD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1288 6kgx:WE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1289 6kgx:WE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1290 6kgx:WE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1291 6kgx:WF (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1292 6kgx:WF (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1293 6kgx:WF (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1294 6kgx:WG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1295 6kgx:WG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1296 6kgx:WG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1297 6kgx:WI (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1298 6kgx:WI (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1299 6kgx:WI (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1300 6kgx:WJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1301 6kgx:WJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1302 6kgx:WJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1303 6kgx:WJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1304 6kgx:X1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1305 6kgx:X1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1306 6kgx:X1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1307 6kgx:X2 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    1308 6kgx:X2 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    1309 6kgx:X2 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    1310 6kgx:X2 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    1311 6kgx:X3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1312 6kgx:X3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1313 6kgx:X3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1314 6kgx:X4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1315 6kgx:X4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1316 6kgx:X4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1317 6kgx:X6 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    1318 6kgx:X6 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    1319 6kgx:X6 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    1320 6kgx:X6 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    1321 6kgx:X7 (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    1322 6kgx:X7 (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    1323 6kgx:X7 (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    1324 6kgx:X7 (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    1325 6kgx:X8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1326 6kgx:X8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1327 6kgx:X8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1328 6kgx:X8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1329 6kgx:X9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1330 6kgx:X9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1331 6kgx:X9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1332 6kgx:XA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1333 6kgx:XA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1334 6kgx:XA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1335 6kgx:XA (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1336 6kgx:XB (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    1337 6kgx:XB (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    1338 6kgx:XB (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    1339 6kgx:XB (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    1340 6kgx:XD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1341 6kgx:XD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1342 6kgx:XD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1343 6kgx:XE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1344 6kgx:XE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1345 6kgx:XE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1346 6kgx:XE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1347 6kgx:XF (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    1348 6kgx:XF (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    1349 6kgx:XF (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    1350 6kgx:XF (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    1351 6kgx:XG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1352 6kgx:XG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1353 6kgx:XG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1354 6kgx:XG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1355 6kgx:XI (2.8) BS01 PEB N/A GO:0015979 ... N/A 32076272
    1356 6kgx:XI (2.8) BS02 PEB N/A GO:0015979 ... N/A 32076272
    1357 6kgx:XI (2.8) BS03 PEB N/A GO:0015979 ... N/A 32076272
    1358 6kgx:XI (2.8) BS04 PEB N/A GO:0015979 ... N/A 32076272
    1359 6kgx:XJ (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    1360 6kgx:XJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1361 6kgx:XJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1362 6kgx:XJ (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    1363 6kgx:Y1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1364 6kgx:Y1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1365 6kgx:Y1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1366 6kgx:Y2 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1367 6kgx:Y2 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1368 6kgx:Y2 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1369 6kgx:Y3 (2.8) BS01 PEB N/A N/A N/A 32076272
    1370 6kgx:Y3 (2.8) BS02 PEB N/A N/A N/A 32076272
    1371 6kgx:Y3 (2.8) BS03 PEB N/A N/A N/A 32076272
    1372 6kgx:Y3 (2.8) BS04 PEB N/A N/A N/A 32076272
    1373 6kgx:Y3 (2.8) BS05 PEB N/A N/A N/A 32076272
    1374 6kgx:Y3 (2.8) BS06 PUB N/A N/A N/A 32076272
    1375 6kgx:Y3 (2.8) BS07 PEB N/A N/A N/A 32076272
    1376 6kgx:Y3 (2.8) BS08 PEB N/A N/A N/A 32076272
    1377 6kgx:Y3 (2.8) BS09 PUB N/A N/A N/A 32076272
    1378 6kgx:Y3 (2.8) BS10 PEB N/A N/A N/A 32076272
    1379 6kgx:Y3 (2.8) BS11 PEB N/A N/A N/A 32076272
    1380 6kgx:Y4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1381 6kgx:Y4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1382 6kgx:Y4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1383 6kgx:Y6 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1384 6kgx:Y6 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1385 6kgx:Y6 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1386 6kgx:Y6 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1387 6kgx:Y7 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1388 6kgx:Y7 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1389 6kgx:Y7 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1390 6kgx:Y7 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1391 6kgx:Y8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1392 6kgx:Y8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    1393 6kgx:Y8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1394 6kgx:Y8 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    1395 6kgx:Y9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    1396 6kgx:Y9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    1397 6kgx:Y9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    1398 6kgx:Y9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    1399 6kgx:YA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    1400 6kgx:YA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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