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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11801 1f8s:F (2.0) BS03 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    11802 1f8s:F (2.0) BS04 FAD 1.4.3.2 GO:0001716 ... P81382 10944103
    11803 1f8s:G (2.0) BS01 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    11804 1f8s:G (2.0) BS02 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    11805 1f8s:G (2.0) BS03 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    11806 1f8s:G (2.0) BS04 FAD 1.4.3.2 GO:0001716 ... P81382 10944103
    11807 1f8s:H (2.0) BS01 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    11808 1f8s:H (2.0) BS02 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    11809 1f8s:H (2.0) BS03 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    11810 1f8s:H (2.0) BS04 FAD 1.4.3.2 GO:0001716 ... P81382 10944103
    11811 1f8v:A (3.0) BS01 rna 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    11812 1f8v:A (3.0) BS02 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    11813 1f8v:A (3.0) BS03 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    11814 1f8v:A (3.0) BS04 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    11815 1f8v:B (3.0) BS01 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    11816 1f8v:C (3.0) BS01 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    11817 1f8v:C (3.0) BS02 CA 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    11818 1f8w:A (2.45) BS01 FAD 1.11.1.1 GO:0004601 ... P37062 10956025
    11819 1f8y:A (2.4) BS01 5MD 2.4.2.6 GO:0009117 ... Q9R5V5 8805514
    11820 1f8y:A (2.4) BS02 5MD 2.4.2.6 GO:0009117 ... Q9R5V5 8805514
    11821 1f8y:B (2.4) BS01 5MD 2.4.2.6 GO:0009117 ... Q9R5V5 8805514
    11822 1f8y:B (2.4) BS02 5MD 2.4.2.6 GO:0009117 ... Q9R5V5 8805514
    11823 1f8z:A (-1.00) BS01 CA ? N/A P01130 10981718
    11824 1f90:H (2.6) BS01 peptide N/A N/A N/A 11468348
    11825 1f90:L (2.6) BS01 peptide N/A N/A N/A 11468348
    11826 1f92:A (2.6) BS01 UKP 3.4.21.73 GO:0004252 ... P00749 10926521 PDBbind: -logKd/Ki=6.19, Ki=0.64uM
    BindingDB: Ki=640nM
    11827 1f93:A (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    11828 1f93:B (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    11829 1f93:C (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    11830 1f93:C (2.6) BS02 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    11831 1f93:D (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    11832 1f93:E (2.6) BS01 peptide ? N/A P22361 10966642
    11833 1f95:A (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    11834 1f95:A (-1.00) BS02 peptide ? GO:0000776 ... P63170 11178896
    11835 1f95:B (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    11836 1f96:A (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    11837 1f96:A (-1.00) BS02 peptide ? GO:0000776 ... P63170 11178896
    11838 1f96:B (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    11839 1f96:B (-1.00) BS02 peptide ? GO:0000776 ... P63170 11178896
    11840 1f99:A (2.4) BS01 BLA ? GO:0009507 ... P59858 11463658
    11841 1f99:A (2.4) BS02 PEB ? GO:0009507 ... P59858 11463658
    11842 1f99:B (2.4) BS01 PEB ? GO:0009507 ... P59859 11463658
    11843 1f99:K (2.4) BS01 PEB ? GO:0009507 ... P59858 11463658
    11844 1f99:L (2.4) BS01 BLA ? GO:0009507 ... P59859 11463658
    11845 1f99:L (2.4) BS02 PEB ? GO:0009507 ... P59859 11463658
    11846 1f99:M (2.4) BS01 PEB ? GO:0009507 ... P59858 11463658
    11847 1f99:N (2.4) BS01 PEB ? GO:0009507 ... P59859 11463658
    11848 1f9a:A (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    11849 1f9a:B (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    11850 1f9a:C (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    11851 1f9a:D (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    11852 1f9a:E (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    11853 1f9a:F (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    11854 1f9b:A (2.7) BS01 FE 3.4.21.- GO:0005576 ... O77811 11599026
    11855 1f9b:A (2.7) BS02 FE 3.4.21.- GO:0005576 ... O77811 11599026
    11856 1f9b:A (2.7) BS03 BCT 3.4.21.- GO:0005576 ... O77811 11599026
    11857 1f9b:A (2.7) BS04 BCT 3.4.21.- GO:0005576 ... O77811 11599026
    11858 1f9b:A (2.7) BS05 3ID 3.4.21.- GO:0005576 ... O77811 11599026
    11859 1f9b:A (2.7) BS06 3ID 3.4.21.- GO:0005576 ... O77811 11599026
    11860 1f9c:A (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    11861 1f9c:B (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    11862 1f9d:A (2.3) BS01 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11863 1f9d:A (2.3) BS02 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11864 1f9d:A (2.3) BS03 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11865 1f9d:A (2.3) BS04 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11866 1f9d:A (2.3) BS05 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11867 1f9d:A (2.3) BS06 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11868 1f9d:A (2.3) BS07 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11869 1f9d:A (2.3) BS08 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11870 1f9d:A (2.3) BS09 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11871 1f9d:A (2.3) BS10 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    11872 1f9e:A (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11873 1f9e:B (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11874 1f9e:C (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11875 1f9e:D (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11876 1f9e:E (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11877 1f9e:F (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11878 1f9e:G (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11879 1f9e:H (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11880 1f9e:I (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11881 1f9e:J (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11882 1f9e:K (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11883 1f9e:L (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    11884 1f9g:A (2.0) BS01 ASC 4.2.2.1 GO:0003824 ... Q54873 11278838 MOAD: Ki=53mM
    PDBbind: -logKd/Ki=1.28, Ki=53mM
    11885 1f9h:A (1.5) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    11886 1f9h:A (1.5) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    11887 1f9h:A (1.5) BS03 APC 2.7.6.3 GO:0000287 ... P26281 12578370
    11888 1f9h:A (1.5) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 12578370
    11889 1f9k:A (3.0) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11890 1f9k:A (3.0) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11891 1f9k:A (3.0) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11892 1f9k:B (3.0) BS01 MN ? GO:0030246 ... Q9SM56 11183779
    11893 1f9k:B (3.0) BS02 CA ? GO:0030246 ... Q9SM56 11183779
    11894 1f9o:A (2.5) BS01 V3P 3.2.1.4 GO:0004553 ... P37698 10985769
    11895 1f9o:A (2.5) BS02 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    11896 1f9o:A (2.5) BS03 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    11897 1f9o:A (2.5) BS04 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    11898 1f9o:A (2.5) BS05 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    11899 1f9o:A (2.5) BS06 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    11900 1f9t:A (1.5) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    11901 1f9u:A (1.7) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    11902 1f9v:A (1.3) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    11903 1f9v:A (1.3) BS02 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    11904 1f9w:A (2.5) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    11905 1f9w:B (2.5) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    11906 1f9x:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 10934209
    11907 1fa0:A (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    11908 1fa0:A (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    11909 1fa0:A (2.6) BS03 3AT 2.7.7.19 GO:0000287 ... P29468 10958780
    11910 1fa0:A (2.6) BS04 3AD 2.7.7.19 GO:0000287 ... P29468 10958780
    11911 1fa0:A (2.6) BS05 POP 2.7.7.19 GO:0000287 ... P29468 10958780
    11912 1fa0:B (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    11913 1fa0:B (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    11914 1fa0:B (2.6) BS03 3AT 2.7.7.19 GO:0000287 ... P29468 10958780
    11915 1fa0:B (2.6) BS04 3AD 2.7.7.19 GO:0000287 ... P29468 10958780
    11916 1fa2:A (2.3) BS01 RR7 3.2.1.2 GO:0000272 ... P10537 7777485
    11917 1fa2:A (2.3) BS02 GLC 3.2.1.2 GO:0000272 ... P10537 7777485
    11918 1fa4:A (-1.00) BS01 CU ? GO:0005507 ... Q3M9H8 N/A
    11919 1fa5:A (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11920 1fa5:A (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11921 1fa5:B (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11922 1fa5:B (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11923 1fa6:A (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11924 1fa6:A (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11925 1fa6:B (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11926 1fa6:B (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    11927 1fa9:A (2.4) BS01 GLC 2.4.1.1 GO:0000166 ... P06737 10949035
    11928 1fa9:A (2.4) BS02 AMP 2.4.1.1 GO:0000166 ... P06737 10949035
    11929 1fa9:A (2.4) BS03 PLP 2.4.1.1 GO:0000166 ... P06737 10949035
    11930 1fae:A (2.0) BS01 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11931 1fae:A (2.0) BS02 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    11932 1fae:A (2.0) BS03 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    11933 1fag:A (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11934 1fag:A (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11935 1fag:B (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11936 1fag:B (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11937 1fag:C (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11938 1fag:C (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11939 1fag:D (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11940 1fag:D (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    11941 1fah:A (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 7578081
    11942 1fah:B (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 7578081
    11943 1fak:H (2.1) BS01 CA 3.4.21.21 GO:0004252 ... P08709 9925787
    11944 1fak:L (2.1) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 9925787
    11945 1fak:L (2.1) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 9925787
    11946 1fak:L (2.1) BS03 CA 3.4.21.21 GO:0005509 ... P08709 9925787
    11947 1fao:A (1.8) BS01 4IP ? N/A Q9UN19 10983984 MOAD: Kd=0.043uM
    PDBbind: -logKd/Ki=7.37, Kd=0.043uM
    11948 1fap:A (2.7) BS01 RAP 5.2.1.8 GO:0000413 ... P62942 8662507 BindingDB: IC50=0.600000nM, EC50=30nM, Ki=0.20nM
    11949 1fap:B (2.7) BS01 RAP 2.7.11.1 GO:0044877 ... P42345 8662507 BindingDB: IC50=>10000nM, Kd=0.600000nM
    11950 1faq:A (-1.00) BS01 ZN 2.7.11.1 N/A P04049 8710867
    11951 1faq:A (-1.00) BS02 ZN 2.7.11.1 N/A P04049 8710867
    11952 1far:A (-1.00) BS01 ZN 2.7.11.1 N/A P04049 8710867
    11953 1fat:A (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11954 1fat:A (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11955 1fat:B (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11956 1fat:B (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11957 1fat:C (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11958 1fat:C (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11959 1fat:D (2.8) BS01 MN ? GO:0005537 ... P05087 8702788
    11960 1fat:D (2.8) BS02 CA ? GO:0005537 ... P05087 8702788
    11961 1fav:A (3.0) BS01 peptide ? GO:0003700 ... P03069
    P03377
    11026535
    11962 1faw:A (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    11963 1faw:B (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    11964 1faw:B (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    11965 1faw:C (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    11966 1faw:D (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    11967 1faw:D (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    11968 1fax:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 8939944
    11969 1fax:A (3.0) BS02 DX9 3.4.21.6 GO:0004252 ... P00742 8939944 PDBbind: -logKd/Ki=7.39, Ki=41nM
    BindingDB: Ki=41nM, IC50=70nM
    11970 1fay:A (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11971 1fay:A (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11972 1fay:A (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11973 1fay:B (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11974 1fay:B (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11975 1fay:B (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11976 1fay:C (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11977 1fay:C (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11978 1fay:C (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11979 1fay:D (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11980 1fay:D (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11981 1fay:D (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11982 1fay:E (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11983 1fay:E (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11984 1fay:E (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11985 1fay:F (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11986 1fay:F (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11987 1fay:F (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11988 1fay:G (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11989 1fay:G (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11990 1fay:G (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11991 1fay:H (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    11992 1fay:H (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    11993 1fay:H (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    11994 1fb1:A (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11995 1fb1:B (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11996 1fb1:C (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11997 1fb1:D (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11998 1fb1:E (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    11999 1fb5:A (3.5) BS01 NVA 2.1.3.3 GO:0000050 ... P84010 14527149
    12000 1fb7:A (2.6) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 11106162

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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