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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    901601 9ey5:A (2.61) BS05 ZN 1.14.18.- N/A P17643 38642076
    901602 9ey6:A (2.228) BS01 FUC 1.14.18.- N/A P17643 38642076
    901603 9ey6:A (2.228) BS02 ZN 1.14.18.- N/A P17643 38642076
    901604 9ey6:A (2.228) BS03 ZN 1.14.18.- N/A P17643 38642076
    901605 9ey6:A (2.228) BS04 ZN 1.14.18.- N/A P17643 38642076
    901606 9ey6:A (2.228) BS05 ZN 1.14.18.- N/A P17643 38642076
    901607 9ey7:A (2.61) BS01 ZN 1.14.18.- N/A P17643 38642076
    901608 9ey7:A (2.61) BS02 ZN 1.14.18.- N/A P17643 38642076
    901609 9ey7:A (2.61) BS03 ZN 1.14.18.- N/A P17643 38642076
    901610 9ey7:A (2.61) BS04 ZN 1.14.18.- N/A P17643 38642076
    901611 9ey7:A (2.61) BS05 OTY 1.14.18.- N/A P17643 38642076
    901612 9ey8:AA (2.2) BS01 FUC 1.14.18.- GO:0016491 ... P17643 38642076
    901613 9ey8:AA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901614 9ey8:AA (2.2) BS03 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901615 9ey8:BA (2.2) BS01 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901616 9ey8:BA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901617 9ey8:CA (2.2) BS01 TY2 1.14.18.- GO:0016491 ... P17643 38642076
    901618 9ey8:CA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901619 9ey8:CA (2.2) BS03 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901620 9ey8:DA (2.2) BS01 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901621 9ey8:DA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    901622 9eyr:A (2.56) BS01 peptide N/A N/A Q9PTN2 38858308
    901623 9eyr:A (2.56) BS02 A1H75 N/A N/A Q9PTN2 38858308
    901624 9eyu:A (2.35) BS01 A1H8A N/A N/A O14744 39080842
    901625 9eyu:A (2.35) BS02 MTA N/A N/A O14744 39080842
    901626 9eyv:A (2.15) BS01 A1H76 N/A N/A O14744 39080842
    901627 9eyv:A (2.15) BS02 MTA N/A N/A O14744 39080842
    901628 9eyw:A (2.3) BS01 A1H8B N/A N/A O14744 39080842
    901629 9eyw:A (2.3) BS02 MTA N/A N/A O14744 39080842
    901630 9eyx:A (2.2) BS01 A1H73 N/A N/A O14744 39080842
    901631 9eyx:A (2.2) BS02 MTA N/A N/A O14744 39080842
    901632 9ez1:A (1.95) BS01 peptide N/A N/A Q9PTN2 38785958
    901633 9ez1:A (1.95) BS02 A1H9P N/A N/A Q9PTN2 38785958
    901634 9ez2:A (1.8) BS01 peptide N/A N/A Q9PTN2 38785958
    901635 9ez2:A (1.8) BS02 A1H72 N/A N/A Q9PTN2 38785958
    901636 9ez3:A (2.7) BS01 A1H74 N/A N/A P49761 N/A
    901637 9ezg:A (2.18) BS01 A1H8C N/A N/A P68400 38959455
    901638 9ezg:B (2.18) BS01 A1H8C N/A N/A P68400 38959455
    901639 9ezj:A (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    901640 9ezj:A (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    901641 9ezj:B (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    901642 9ezj:B (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    901643 9ezj:C (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    901644 9ezj:C (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    901645 9ezj:D (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    901646 9ezj:D (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    901647 9ezl:A (2.97) BS01 CA N/A N/A I3NX86 39109746
    901648 9ezl:A (2.97) BS02 MG N/A N/A I3NX86 39109746
    901649 9ezl:B (2.97) BS01 CA N/A N/A I3NX86 39109746
    901650 9ezl:B (2.97) BS02 MG N/A N/A I3NX86 39109746
    901651 9ezl:C (2.97) BS01 CA N/A N/A I3NX86 39109746
    901652 9ezl:C (2.97) BS02 MG N/A N/A I3NX86 39109746
    901653 9ezl:D (2.97) BS01 CA N/A N/A I3NX86 39109746
    901654 9ezl:D (2.97) BS02 MG N/A N/A I3NX86 39109746
    901655 9ezl:E (2.97) BS01 CA N/A N/A I3NX86 39109746
    901656 9ezl:E (2.97) BS02 MG N/A N/A I3NX86 39109746
    901657 9ezl:F (2.97) BS01 CA N/A N/A I3NX86 39109746
    901658 9ezl:F (2.97) BS02 MG N/A N/A I3NX86 39109746
    901659 9ezl:G (2.97) BS01 CA N/A N/A I3NX86 39109746
    901660 9ezl:G (2.97) BS02 MG N/A N/A I3NX86 39109746
    901661 9ezl:H (2.97) BS01 CA N/A N/A I3NX86 39109746
    901662 9ezl:H (2.97) BS02 MG N/A N/A I3NX86 39109746
    901663 9ezy:A (2.56) BS01 dna N/A N/A Q9KR72 38870273
    901664 9ezy:B (2.56) BS01 dna N/A N/A Q9KR73 38870273
    901665 9ezy:B (2.56) BS02 dna N/A N/A Q9KR73 38870273
    901666 9ezy:B (2.56) BS03 dna N/A N/A Q9KR73 38870273
    901667 9ezz:A (1.95) BS01 dna N/A N/A Q6MRM1 38864377
    901668 9f0e:A (1.85) BS01 dna N/A N/A Q6MRM1 38864377
    901669 9f0f:A (2.1) BS01 HT9 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    901670 9f0f:A (2.1) BS02 FE 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    901671 9f0g:A (1.85) BS01 FEC 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    901672 9f14:A (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    901673 9f14:B (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    901674 9f17:A (1.7) BS01 CA N/A N/A P56137 39062851
    901675 9f17:A (1.7) BS02 GDP N/A N/A P56137 39062851
    901676 9f17:A (1.7) BS03 IMP N/A N/A P56137 39062851
    901677 9f17:B (1.7) BS01 CA N/A N/A P56137 39062851
    901678 9f17:B (1.7) BS02 IMP N/A N/A P56137 39062851
    901679 9f17:B (1.7) BS03 GDP N/A N/A P56137 39062851
    901680 9f1b:AA (3.01) BS01 rna N/A N/A G1TZ76 39169182
    901681 9f1b:AB (3.01) BS01 rna N/A N/A G1TIB4 39169182
    901682 9f1b:AC (3.01) BS01 rna N/A N/A G1SK22 39169182
    901683 9f1b:AC (3.01) BS02 ZN N/A N/A G1SK22 39169182
    901684 9f1b:AD (3.01) BS01 rna N/A N/A G1T8A2 39169182
    901685 9f1b:AE (3.01) BS01 rna N/A N/A N/A 39169182
    901686 9f1b:AE (3.01) BS02 ZN N/A N/A N/A 39169182
    901687 9f1b:AF (3.01) BS01 rna N/A N/A G1SJB4 39169182
    901688 9f1b:AG (3.01) BS01 rna N/A N/A G1U7M4 39169182
    901689 9f1b:AG (3.01) BS02 ZN N/A N/A G1U7M4 39169182
    901690 9f1b:AZ (3.01) BS01 rna N/A N/A G1TLT8 39169182
    901691 9f1b:Aa (3.01) BS01 rna N/A N/A G1SS70 39169182
    901692 9f1b:Ab (3.01) BS01 rna N/A N/A N/A 39169182
    901693 9f1b:Ac (3.01) BS01 rna N/A N/A G1TNM3 39169182
    901694 9f1b:Ad (3.01) BS01 rna N/A N/A G1TK17 39169182
    901695 9f1b:Ae (3.01) BS01 rna N/A N/A G1TFM5 39169182
    901696 9f1b:Af (3.01) BS01 rna N/A N/A G1TM55 39169182
    901697 9f1b:Ag (3.01) BS01 rna N/A N/A G1SVB0 39169182
    901698 9f1b:Ah (3.01) BS01 rna N/A N/A G1TJW1 39169182
    901699 9f1b:Ah (3.01) BS02 rna N/A N/A G1TJW1 39169182
    901700 9f1b:Ai (3.01) BS01 rna N/A N/A B7NZS8 39169182
    901701 9f1b:Aj (3.01) BS01 rna N/A N/A G1TPV3 39169182
    901702 9f1b:Ak (3.01) BS01 rna N/A N/A G1TRM4 39169182
    901703 9f1b:Al (3.01) BS01 rna N/A N/A G1SFR8 39169182
    901704 9f1b:Am (3.01) BS01 rna N/A N/A G1SP51 39169182
    901705 9f1b:Am (3.01) BS02 rna N/A N/A G1SP51 39169182
    901706 9f1b:An (3.01) BS01 rna N/A N/A A0AAA9WYR1 39169182
    901707 9f1b:Ao (3.01) BS01 rna N/A N/A G1U0Q2 39169182
    901708 9f1b:Ao (3.01) BS02 rna N/A N/A G1U0Q2 39169182
    901709 9f1b:Ap (3.01) BS01 rna N/A N/A G1SGX4 39169182
    901710 9f1b:Aq (3.01) BS01 rna N/A N/A G1TU13 39169182
    901711 9f1b:Ar (3.01) BS01 rna N/A N/A G1TPG3 39169182
    901712 9f1b:As (3.01) BS01 rna N/A N/A G1TN62 39169182
    901713 9f1b:At (3.01) BS01 rna N/A N/A G1SIZ2 39169182
    901714 9f1b:Av (3.01) BS01 rna N/A N/A G1TG89 39169182
    901715 9f1b:Aw (3.01) BS01 rna N/A N/A G1SZ47 39169182
    901716 9f1b:Ax (3.01) BS01 rna N/A N/A G1T3D8 39169182
    901717 9f1b:Ay (3.01) BS01 rna N/A N/A G1TDB3 39169182
    901718 9f1b:Ay (3.01) BS02 rna N/A N/A G1TDB3 39169182
    901719 9f1b:B (3.01) BS01 rna N/A N/A G1SZF4 39169182
    901720 9f1b:B (3.01) BS02 rna N/A N/A G1SZF4 39169182
    901721 9f1b:B (3.01) BS03 GTP N/A N/A G1SZF4 39169182
    901722 9f1b:BA (3.01) BS01 rna N/A N/A G1TT27 39169182
    901723 9f1b:BA (3.01) BS02 rna N/A N/A G1TT27 39169182
    901724 9f1b:BB (3.01) BS01 rna N/A N/A G1TL06 39169182
    901725 9f1b:BC (3.01) BS01 rna N/A N/A G1SVW5 39169182
    901726 9f1b:BC (3.01) BS02 rna N/A N/A G1SVW5 39169182
    901727 9f1b:BE (3.01) BS01 rna N/A N/A G1SKF7 39169182
    901728 9f1b:BF (3.01) BS01 rna N/A N/A G1TUB1 39169182
    901729 9f1b:BF (3.01) BS02 rna N/A N/A G1TUB1 39169182
    901730 9f1b:BG (3.01) BS01 rna N/A N/A N/A 39169182
    901731 9f1b:BG (3.01) BS02 rna N/A N/A N/A 39169182
    901732 9f1b:BH (3.01) BS01 rna N/A N/A G1SWI6 39169182
    901733 9f1b:BI (3.01) BS01 rna N/A N/A B7NZQ2 39169182
    901734 9f1b:BI (3.01) BS02 rna N/A N/A B7NZQ2 39169182
    901735 9f1b:BI (3.01) BS03 rna N/A N/A B7NZQ2 39169182
    901736 9f1b:BJ (3.01) BS01 rna N/A N/A G1TUB8 39169182
    901737 9f1b:BJ (3.01) BS02 rna N/A N/A G1TUB8 39169182
    901738 9f1b:BJ (3.01) BS03 rna N/A N/A G1TUB8 39169182
    901739 9f1b:BL (3.01) BS01 rna N/A N/A G1TKB3 39169182
    901740 9f1b:BL (3.01) BS02 rna N/A N/A G1TKB3 39169182
    901741 9f1b:BM (3.01) BS01 rna N/A N/A G1SZ12 39169182
    901742 9f1b:BN (3.01) BS01 rna N/A N/A G1T0C1 39169182
    901743 9f1b:BN (3.01) BS02 rna N/A N/A G1T0C1 39169182
    901744 9f1b:BO (3.01) BS01 rna N/A N/A G1TVS8 39169182
    901745 9f1b:BP (3.01) BS01 rna N/A N/A G1SCJ6 39169182
    901746 9f1b:BP (3.01) BS02 rna N/A N/A G1SCJ6 39169182
    901747 9f1b:BQ (3.01) BS01 rna N/A N/A N/A 39169182
    901748 9f1b:BR (3.01) BS01 rna N/A N/A G1TJR3 39169182
    901749 9f1b:BR (3.01) BS02 rna N/A N/A G1TJR3 39169182
    901750 9f1b:BS (3.01) BS01 rna N/A N/A G1TTY7 39169182
    901751 9f1b:BS (3.01) BS02 rna N/A N/A G1TTY7 39169182
    901752 9f1b:BT (3.01) BS01 rna N/A N/A G1SHQ2 39169182
    901753 9f1b:BT (3.01) BS02 rna N/A N/A G1SHQ2 39169182
    901754 9f1b:BU (3.01) BS01 rna N/A N/A G1TSG1 39169182
    901755 9f1b:BV (3.01) BS01 rna N/A N/A G1T6D1 39169182
    901756 9f1b:BW (3.01) BS01 rna N/A N/A G1SE28 39169182
    901757 9f1b:BW (3.01) BS02 rna N/A N/A G1SE28 39169182
    901758 9f1b:BX (3.01) BS01 rna N/A N/A G1SE76 39169182
    901759 9f1b:BX (3.01) BS02 rna N/A N/A G1SE76 39169182
    901760 9f1b:BY (3.01) BS01 rna N/A N/A G1SQH0 39169182
    901761 9f1b:BY (3.01) BS02 rna N/A N/A G1SQH0 39169182
    901762 9f1b:BZ (3.01) BS01 rna N/A N/A G1TXF6 39169182
    901763 9f1b:Ba (3.01) BS01 rna N/A N/A G1SNY0 39169182
    901764 9f1b:Bb (3.01) BS01 rna N/A N/A G1SGR6 39169182
    901765 9f1b:Bc (3.01) BS01 rna N/A N/A G1TDL2 39169182
    901766 9f1b:Bc (3.01) BS02 rna N/A N/A G1TDL2 39169182
    901767 9f1b:Bd (3.01) BS01 rna N/A N/A G1SHG0 39169182
    901768 9f1b:Be (3.01) BS01 rna N/A N/A G1U6S0 39169182
    901769 9f1b:Bf (3.01) BS01 rna N/A N/A G1SF08 39169182
    901770 9f1b:Bg (3.01) BS01 rna N/A N/A G1TXG5 39169182
    901771 9f1b:Bg (3.01) BS02 ZN N/A N/A G1TXG5 39169182
    901772 9f1b:Bh (3.01) BS01 rna N/A N/A G1SIT5 39169182
    901773 9f1b:Bh (3.01) BS02 rna N/A N/A G1SIT5 39169182
    901774 9f1b:Bi (3.01) BS01 rna N/A N/A G1TTQ5 39169182
    901775 9f1b:Bj (3.01) BS01 rna N/A N/A U3KPD5 39169182
    901776 9f1b:Bj (3.01) BS02 rna N/A N/A U3KPD5 39169182
    901777 9f1b:Bj (3.01) BS03 ZN N/A N/A U3KPD5 39169182
    901778 9f1b:Bk (3.01) BS01 rna N/A N/A G1U001 39169182
    901779 9f1b:Bl (3.01) BS01 rna N/A N/A G1TTN1 39169182
    901780 9f1b:Bl (3.01) BS02 rna N/A N/A G1TTN1 39169182
    901781 9f1b:Bl (3.01) BS03 peptide N/A N/A G1TTN1 39169182
    901782 9f1b:Bm (3.01) BS01 rna N/A N/A P0DXC2 39169182
    901783 9f1b:Bm (3.01) BS02 ZN N/A N/A P0DXC2 39169182
    901784 9f1b:Bo (3.01) BS01 rna N/A N/A A0AAA9WX15 39169182
    901785 9f1b:Bo (3.01) BS02 ZN N/A N/A A0AAA9WX15 39169182
    901786 9f1b:Bp (3.01) BS01 rna N/A N/A G1SY53 39169182
    901787 9f1b:Bp (3.01) BS02 ZN N/A N/A G1SY53 39169182
    901788 9f1b:Br (3.01) BS01 rna N/A N/A G1U7L1 39169182
    901789 9f1b:Bs (3.01) BS01 rna N/A N/A G1SPK4 39169182
    901790 9f1b:Bt (3.01) BS01 rna N/A N/A G1SMR7 39169182
    901791 9f1b:Cu (3.01) BS01 rna N/A N/A P20290 39169182
    901792 9f1b:DB (3.01) BS01 rna N/A N/A Q9BXJ9 39169182
    901793 9f1b:DB (3.01) BS02 IHP N/A N/A Q9BXJ9 39169182
    901794 9f1c:AA (3.78) BS01 rna N/A N/A G1TZ76 39169182
    901795 9f1c:AB (3.78) BS01 rna N/A N/A G1TIB4 39169182
    901796 9f1c:AC (3.78) BS01 rna N/A N/A G1SK22 39169182
    901797 9f1c:AC (3.78) BS02 ZN N/A N/A G1SK22 39169182
    901798 9f1c:AD (3.78) BS01 rna N/A N/A G1T8A2 39169182
    901799 9f1c:AE (3.78) BS01 rna N/A N/A N/A 39169182
    901800 9f1c:AE (3.78) BS02 ZN N/A N/A N/A 39169182
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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