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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    901201 9eq7:L (3.23) BS02 BGC N/A N/A N/A 38992036
    901202 9eq7:M (3.23) BS01 BGC N/A N/A N/A 38992036
    901203 9eq7:M (3.23) BS02 BGC N/A N/A N/A 38992036
    901204 9eq7:N (3.23) BS01 BGC N/A N/A N/A 38992036
    901205 9eq7:N (3.23) BS02 BGC N/A N/A N/A 38992036
    901206 9eq7:O (3.23) BS01 BGC N/A N/A N/A 38992036
    901207 9eq7:O (3.23) BS02 BGC N/A N/A N/A 38992036
    901208 9eq7:P (3.23) BS01 BGC N/A N/A N/A 38992036
    901209 9eq7:P (3.23) BS02 BGC N/A N/A N/A 38992036
    901210 9eq7:Q (3.23) BS01 BGC N/A N/A N/A 38992036
    901211 9eq7:Q (3.23) BS02 BGC N/A N/A N/A 38992036
    901212 9eq7:R (3.23) BS01 BGC N/A N/A N/A 38992036
    901213 9eq7:R (3.23) BS02 BGC N/A N/A N/A 38992036
    901214 9eq7:S (3.23) BS01 BGC N/A N/A N/A 38992036
    901215 9eq7:S (3.23) BS02 BGC N/A N/A N/A 38992036
    901216 9eq7:T (3.23) BS01 BGC N/A N/A N/A 38992036
    901217 9eq7:T (3.23) BS02 BGC N/A N/A N/A 38992036
    901218 9eq7:U (3.23) BS01 BGC N/A N/A N/A 38992036
    901219 9eq7:U (3.23) BS02 BGC N/A N/A N/A 38992036
    901220 9eq7:V (3.23) BS01 BGC N/A N/A N/A 38992036
    901221 9eq7:V (3.23) BS02 BGC N/A N/A N/A 38992036
    901222 9eq7:W (3.23) BS01 BGC N/A N/A N/A 38992036
    901223 9eq7:W (3.23) BS02 BGC N/A N/A N/A 38992036
    901224 9eq7:X (3.23) BS01 BGC N/A N/A N/A 38992036
    901225 9eq7:X (3.23) BS02 BGC N/A N/A N/A 38992036
    901226 9eq7:Y (3.23) BS01 BGC N/A N/A N/A 38992036
    901227 9eq7:Y (3.23) BS02 BGC N/A N/A N/A 38992036
    901228 9eq7:Z (3.23) BS01 BGC N/A N/A N/A 38992036
    901229 9eq7:Z (3.23) BS02 BGC N/A N/A N/A 38992036
    901230 9eqf:A (1.6) BS01 FE2 N/A GO:0016020 ... Q6WZB0 39114090
    901231 9eqf:A (1.6) BS02 ARG N/A GO:0016020 ... Q6WZB0 39114090
    901232 9eqg:A (2.4) BS01 PGW N/A N/A P14867 39261733
    901233 9eqg:A (2.4) BS02 PT5 N/A N/A P14867 39261733
    901234 9eqg:A (2.4) BS03 ABU N/A N/A P14867 39261733
    901235 9eqg:B (2.4) BS01 ABU N/A N/A P28472 39261733
    901236 9eqg:C (2.4) BS01 MAN N/A N/A P18507 39261733
    901237 9eqg:C (2.4) BS02 A1H6W N/A N/A P18507 39261733
    901238 9eqg:D (2.4) BS01 MAN N/A N/A P14867 39261733
    901239 9eqg:D (2.4) BS02 PGW N/A N/A P14867 39261733
    901240 9eqg:D (2.4) BS03 A1H6W N/A N/A P14867 39261733
    901241 9eqg:D (2.4) BS04 PT5 N/A N/A P14867 39261733
    901242 9eqg:E (2.4) BS01 PGW N/A N/A P28472 39261733
    901243 9eqg:E (2.4) BS02 ABU N/A N/A P28472 39261733
    901244 9eqj:C (2.05) BS01 A1H6O N/A N/A P40337 38942127
    901245 9eqj:F (2.05) BS01 A1H6O N/A N/A P40337 38942127
    901246 9eqm:C (2.19) BS01 A1H9F N/A N/A P40337 38942127
    901247 9erx:R (2.9) BS01 A1H66 N/A GO:0002866 ... P21554 38826401
    901248 9ery:A (2.7) BS01 VVH N/A N/A Q9NZQ7 39032403
    901249 9ery:B (2.7) BS01 VVH N/A N/A Q9NZQ7 39032403
    901250 9esm:A (3.06) BS01 BGC N/A N/A N/A 38992036
    901251 9esm:A (3.06) BS02 BGC N/A N/A N/A 38992036
    901252 9esm:B (3.06) BS01 BGC N/A N/A N/A 38992036
    901253 9esm:C (3.06) BS01 BGC N/A N/A N/A 38992036
    901254 9esm:D (3.06) BS01 BGC N/A N/A N/A 38992036
    901255 9esm:E (3.06) BS01 BGC N/A N/A N/A 38992036
    901256 9esm:E (3.06) BS02 BGC N/A N/A N/A 38992036
    901257 9esm:F (3.06) BS01 BGC N/A N/A N/A 38992036
    901258 9esm:G (3.06) BS01 BGC N/A N/A N/A 38992036
    901259 9esm:G (3.06) BS02 BDP N/A N/A N/A 38992036
    901260 9esm:G (3.06) BS03 BGC N/A N/A N/A 38992036
    901261 9esm:H (3.06) BS01 BGC N/A N/A N/A 38992036
    901262 9esm:H (3.06) BS02 BGC N/A N/A N/A 38992036
    901263 9esm:I (3.06) BS01 BGC N/A N/A N/A 38992036
    901264 9esm:I (3.06) BS02 BGC N/A N/A N/A 38992036
    901265 9esm:J (3.06) BS01 BGC N/A N/A N/A 38992036
    901266 9esm:J (3.06) BS02 BGC N/A N/A N/A 38992036
    901267 9esm:K (3.06) BS01 BDP N/A N/A N/A 38992036
    901268 9esm:K (3.06) BS02 BGC N/A N/A N/A 38992036
    901269 9esm:K (3.06) BS03 BGC N/A N/A N/A 38992036
    901270 9esm:L (3.06) BS01 BGC N/A N/A N/A 38992036
    901271 9esm:L (3.06) BS02 BGC N/A N/A N/A 38992036
    901272 9esm:L (3.06) BS03 BDP N/A N/A N/A 38992036
    901273 9esm:M (3.06) BS01 BGC N/A N/A N/A 38992036
    901274 9esm:N (3.06) BS01 BDP N/A N/A N/A 38992036
    901275 9esm:N (3.06) BS02 BGC N/A N/A N/A 38992036
    901276 9esm:N (3.06) BS03 BGC N/A N/A N/A 38992036
    901277 9esm:O (3.06) BS01 BGC N/A N/A N/A 38992036
    901278 9esm:O (3.06) BS02 BGC N/A N/A N/A 38992036
    901279 9esm:P (3.06) BS01 BGC N/A N/A N/A 38992036
    901280 9esm:P (3.06) BS02 BGC N/A N/A N/A 38992036
    901281 9esm:Q (3.06) BS01 BDP N/A N/A N/A 38992036
    901282 9esm:Q (3.06) BS02 BGC N/A N/A N/A 38992036
    901283 9esm:Q (3.06) BS03 BGC N/A N/A N/A 38992036
    901284 9esm:R (3.06) BS01 BGC N/A N/A N/A 38992036
    901285 9esm:R (3.06) BS02 BGC N/A N/A N/A 38992036
    901286 9esm:S (3.06) BS01 BGC N/A N/A N/A 38992036
    901287 9esm:S (3.06) BS02 BGC N/A N/A N/A 38992036
    901288 9esm:T (3.06) BS01 BGC N/A N/A N/A 38992036
    901289 9esm:U (3.06) BS01 BGC N/A N/A N/A 38992036
    901290 9esm:U (3.06) BS02 BGC N/A N/A N/A 38992036
    901291 9esm:V (3.06) BS01 BGC N/A N/A N/A 38992036
    901292 9esm:V (3.06) BS02 BGC N/A N/A N/A 38992036
    901293 9esm:W (3.06) BS01 BGC N/A N/A N/A 38992036
    901294 9esm:W (3.06) BS02 BGC N/A N/A N/A 38992036
    901295 9esm:X (3.06) BS01 BDP N/A N/A N/A 38992036
    901296 9esm:X (3.06) BS02 BGC N/A N/A N/A 38992036
    901297 9esm:X (3.06) BS03 BGC N/A N/A N/A 38992036
    901298 9esm:Y (3.06) BS01 BGC N/A N/A N/A 38992036
    901299 9esm:Y (3.06) BS02 BGC N/A N/A N/A 38992036
    901300 9est:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 1998677
    901301 9est:A (1.9) BS02 IBR 3.4.21.36 GO:0004252 ... P00772 1998677
    901302 9etk:A (1.48) BS01 MN N/A N/A A0A0H5Y1H1 N/A
    901303 9etk:A (1.48) BS02 MG N/A N/A A0A0H5Y1H1 N/A
    901304 9etk:A (1.48) BS03 MG N/A N/A A0A0H5Y1H1 N/A
    901305 9etn:A (1.584) BS01 CA N/A GO:0005515 ... Q8R555 39029889
    901306 9etn:A (1.584) BS02 CA N/A GO:0005515 ... Q8R555 39029889
    901307 9etn:A (1.584) BS03 CA N/A GO:0005515 ... Q8R555 39029889
    901308 9etn:A (1.584) BS04 CA N/A GO:0005515 ... Q8R555 39029889
    901309 9etn:A (1.584) BS05 CA N/A GO:0005515 ... Q8R555 39029889
    901310 9etn:A (1.584) BS06 CA N/A GO:0005515 ... Q8R555 39029889
    901311 9etn:A (1.584) BS07 K N/A GO:0005515 ... Q8R555 39029889
    901312 9etn:A (1.584) BS08 K N/A GO:0005515 ... Q8R555 39029889
    901313 9etn:A (1.584) BS09 K N/A GO:0005515 ... Q8R555 39029889
    901314 9etn:A (1.584) BS10 NA N/A GO:0005515 ... Q8R555 39029889
    901315 9etu:A (3.33) BS01 BGC N/A N/A N/A 38992036
    901316 9etu:A (3.33) BS02 BGC N/A N/A N/A 38992036
    901317 9etu:B (3.33) BS01 BGC N/A N/A N/A 38992036
    901318 9etu:B (3.33) BS02 BGC N/A N/A N/A 38992036
    901319 9etu:C (3.33) BS01 BGC N/A N/A N/A 38992036
    901320 9etu:C (3.33) BS02 BGC N/A N/A N/A 38992036
    901321 9etu:D (3.33) BS01 BGC N/A N/A N/A 38992036
    901322 9etu:D (3.33) BS02 BGC N/A N/A N/A 38992036
    901323 9etu:E (3.33) BS01 BGC N/A N/A N/A 38992036
    901324 9etu:E (3.33) BS02 BGC N/A N/A N/A 38992036
    901325 9etu:F (3.33) BS01 BGC N/A N/A N/A 38992036
    901326 9etu:F (3.33) BS02 BGC N/A N/A N/A 38992036
    901327 9etu:G (3.33) BS01 BGC N/A N/A N/A 38992036
    901328 9etu:G (3.33) BS02 BGC N/A N/A N/A 38992036
    901329 9etu:H (3.33) BS01 BGC N/A N/A N/A 38992036
    901330 9etu:H (3.33) BS02 BGC N/A N/A N/A 38992036
    901331 9etu:I (3.33) BS01 BGC N/A N/A N/A 38992036
    901332 9etu:I (3.33) BS02 BGC N/A N/A N/A 38992036
    901333 9etu:J (3.33) BS01 BGC N/A N/A N/A 38992036
    901334 9etu:J (3.33) BS02 BGC N/A N/A N/A 38992036
    901335 9etu:K (3.33) BS01 BGC N/A N/A N/A 38992036
    901336 9etu:K (3.33) BS02 BGC N/A N/A N/A 38992036
    901337 9etu:L (3.33) BS01 BGC N/A N/A N/A 38992036
    901338 9etu:L (3.33) BS02 BGC N/A N/A N/A 38992036
    901339 9etu:M (3.33) BS01 BGC N/A N/A N/A 38992036
    901340 9etu:N (3.33) BS01 BGC N/A N/A N/A 38992036
    901341 9etu:N (3.33) BS02 BGC N/A N/A N/A 38992036
    901342 9etu:O (3.33) BS01 BGC N/A N/A N/A 38992036
    901343 9etu:O (3.33) BS02 BGC N/A N/A N/A 38992036
    901344 9etu:P (3.33) BS01 BGC N/A N/A N/A 38992036
    901345 9etu:P (3.33) BS02 BGC N/A N/A N/A 38992036
    901346 9etu:Q (3.33) BS01 BGC N/A N/A N/A 38992036
    901347 9etu:Q (3.33) BS02 BGC N/A N/A N/A 38992036
    901348 9etu:R (3.33) BS01 BGC N/A N/A N/A 38992036
    901349 9etu:S (3.33) BS01 BGC N/A N/A N/A 38992036
    901350 9etu:S (3.33) BS02 BGC N/A N/A N/A 38992036
    901351 9etu:T (3.33) BS01 BGC N/A N/A N/A 38992036
    901352 9etu:T (3.33) BS02 BGC N/A N/A N/A 38992036
    901353 9etu:U (3.33) BS01 BGC N/A N/A N/A 38992036
    901354 9etu:U (3.33) BS02 BGC N/A N/A N/A 38992036
    901355 9etu:V (3.33) BS01 BGC N/A N/A N/A 38992036
    901356 9etu:V (3.33) BS02 BGC N/A N/A N/A 38992036
    901357 9etu:W (3.33) BS01 BGC N/A N/A N/A 38992036
    901358 9etu:W (3.33) BS02 BGC N/A N/A N/A 38992036
    901359 9etu:X (3.33) BS01 BGC N/A N/A N/A 38992036
    901360 9etu:X (3.33) BS02 BGC N/A N/A N/A 38992036
    901361 9etu:Y (3.33) BS01 BGC N/A N/A N/A 38992036
    901362 9etu:Y (3.33) BS02 BGC N/A N/A N/A 38992036
    901363 9eu5:A (3.0) BS01 5JK N/A N/A Q64610 39008358
    901364 9eu5:A (3.0) BS02 ZN N/A N/A Q64610 39008358
    901365 9eu5:A (3.0) BS03 ZN N/A N/A Q64610 39008358
    901366 9eu5:A (3.0) BS04 ZN N/A N/A Q64610 39008358
    901367 9eu5:A (3.0) BS05 CA N/A N/A Q64610 39008358
    901368 9eu6:A (1.54) BS01 A1H7U 5.2.1.8 N/A Q13451 38818693
    901369 9eu7:A (2.21) BS01 A1H7A 5.2.1.8 N/A Q13451 38818693
    901370 9eu7:B (2.21) BS01 A1H7A 5.2.1.8 N/A Q13451 38818693
    901371 9eu7:B (2.21) BS02 A1H7A 5.2.1.8 N/A Q13451 38818693
    901372 9eu8:A (2.3) BS01 A1H7B 5.2.1.8 N/A Q13451 38818693
    901373 9eu8:B (2.3) BS01 A1H7B 5.2.1.8 N/A Q13451 38818693
    901374 9eu9:A (1.8) BS01 A1H7C 5.2.1.8 N/A Q13451 38818693
    901375 9eu9:B (1.8) BS01 A1H7C 5.2.1.8 N/A Q13451 38818693
    901376 9eua:A (2.5) BS01 A1H7D 5.2.1.8 N/A Q13451 38818693
    901377 9eua:B (2.5) BS01 A1H7D 5.2.1.8 N/A Q13451 38818693
    901378 9eub:A (2.0) BS01 A1H7E 5.2.1.8 N/A Q13451 38818693
    901379 9eub:B (2.0) BS01 A1H7E 5.2.1.8 N/A Q13451 38818693
    901380 9euc:A (2.4) BS01 A1H7F 5.2.1.8 N/A Q13451 38818693
    901381 9euc:B (2.4) BS01 A1H7F 5.2.1.8 N/A Q13451 38818693
    901382 9eud:A (2.022) BS01 A1H7G 5.2.1.8 N/A Q13451 38818693
    901383 9eud:B (2.022) BS01 A1H7G 5.2.1.8 N/A Q13451 38818693
    901384 9eue:A (2.0) BS01 A1H68 5.2.1.8 N/A Q13451 38818693
    901385 9eue:B (2.0) BS01 A1H68 5.2.1.8 N/A Q13451 38818693
    901386 9eun:A (2.33) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    901387 9eun:A (2.33) BS02 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    901388 9eun:B (2.33) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    901389 9eun:B (2.33) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    901390 9euo:A (3.2) BS01 A1H8F N/A N/A Q7K4Y6 39010681
    901391 9euo:A (3.2) BS02 Y01 N/A N/A Q7K4Y6 39010681
    901392 9euo:A (3.2) BS03 CLR N/A N/A Q7K4Y6 39010681
    901393 9euo:A (3.2) BS04 NA N/A N/A Q7K4Y6 39010681
    901394 9euo:A (3.2) BS05 CL N/A N/A Q7K4Y6 39010681
    901395 9eup:A (3.0) BS01 Y01 N/A N/A Q7K4Y6 39010681
    901396 9eup:A (3.0) BS02 CLR N/A N/A Q7K4Y6 39010681
    901397 9eup:A (3.0) BS03 NA N/A N/A Q7K4Y6 39010681
    901398 9eup:A (3.0) BS04 NA N/A N/A Q7K4Y6 39010681
    901399 9eup:A (3.0) BS05 CL N/A N/A Q7K4Y6 39010681
    901400 9eut:A (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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