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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    900201 9c9m:A (2.01) BS03 dna N/A N/A P12497 39066328
    900202 9c9m:A (2.01) BS04 MG N/A N/A P12497 39066328
    900203 9c9m:A (2.01) BS05 MG N/A N/A P12497 39066328
    900204 9c9m:A (2.01) BS06 ZN N/A N/A P12497 39066328
    900205 9c9m:A (2.01) BS07 DLU N/A N/A P12497 39066328
    900206 9c9m:C (2.01) BS01 dna N/A N/A P12497 39066328
    900207 9c9m:D (2.01) BS01 dna N/A N/A P12497 39066328
    900208 9c9m:D (2.01) BS02 dna N/A N/A P12497 39066328
    900209 9c9m:I (2.01) BS01 dna N/A N/A P12497 39066328
    900210 9c9m:I (2.01) BS02 dna N/A N/A P12497 39066328
    900211 9c9m:I (2.01) BS03 dna N/A N/A P12497 39066328
    900212 9c9m:I (2.01) BS04 MG N/A N/A P12497 39066328
    900213 9c9m:I (2.01) BS05 MG N/A N/A P12497 39066328
    900214 9c9m:I (2.01) BS06 ZN N/A N/A P12497 39066328
    900215 9c9m:I (2.01) BS07 DLU N/A N/A P12497 39066328
    900216 9c9m:L (2.01) BS01 dna N/A N/A P12497 39066328
    900217 9c9m:M (2.01) BS01 dna N/A N/A P12497 39066328
    900218 9c9m:M (2.01) BS02 dna N/A N/A P12497 39066328
    900219 9c9v:A (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    900220 9c9v:B (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    900221 9c9v:C (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    900222 9c9v:D (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    900223 9c9v:E (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    900224 9c9v:F (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    900225 9c9y:A (3.35) BS01 dna N/A N/A O95985 N/A
    900226 9c9y:A (3.35) BS02 MN N/A N/A O95985 N/A
    900227 9c9y:A (3.35) BS03 MN N/A N/A O95985 N/A
    900228 9ca0:A (3.48) BS01 dna N/A N/A O95985 N/A
    900229 9ca0:A (3.48) BS02 dna N/A N/A O95985 N/A
    900230 9ca0:A (3.48) BS03 MN N/A N/A O95985 N/A
    900231 9ca1:A (3.26) BS01 dna N/A N/A O95985 N/A
    900232 9ca1:A (3.26) BS02 dna N/A N/A O95985 N/A
    900233 9ca1:A (3.26) BS03 MN N/A N/A O95985 N/A
    900234 9ca1:A (3.26) BS04 MN N/A N/A O95985 N/A
    900235 9ca2:A (2.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1932029
    900236 9cai:AA (2.59) BS01 rna N/A N/A P46769 39209556
    900237 9cai:AB (2.59) BS01 rna N/A N/A P48154 39209556
    900238 9cai:AC (2.59) BS01 rna N/A N/A P51403 39209556
    900239 9cai:AD (2.59) BS01 rna N/A N/A P48152 39209556
    900240 9cai:AE (2.59) BS01 rna N/A N/A Q9N3X2 39209556
    900241 9cai:AF (2.59) BS01 rna N/A N/A P49041 39209556
    900242 9cai:AG (2.59) BS01 rna N/A N/A Q9NEN6 39209556
    900243 9cai:AH (2.59) BS01 rna N/A N/A Q23312 39209556
    900244 9cai:AI (2.59) BS01 rna N/A N/A P48156 39209556
    900245 9cai:AI (2.59) BS02 rna N/A N/A P48156 39209556
    900246 9cai:AJ (2.59) BS01 rna N/A N/A Q20228 39209556
    900247 9cai:AK (2.59) BS01 rna N/A N/A O01869 39209556
    900248 9cai:AL (2.59) BS01 rna N/A N/A Q20206 39209556
    900249 9cai:AM (2.59) BS01 rna N/A N/A P49196 39209556
    900250 9cai:AN (2.59) BS01 rna N/A N/A P51404 39209556
    900251 9cai:AN (2.59) BS02 rna N/A N/A P51404 39209556
    900252 9cai:AO (2.59) BS01 rna N/A N/A P48150 39209556
    900253 9cai:AP (2.59) BS01 rna N/A N/A Q9XVP0 39209556
    900254 9cai:AP (2.59) BS02 rna N/A N/A Q9XVP0 39209556
    900255 9cai:AQ (2.59) BS01 rna N/A N/A Q22054 39209556
    900256 9cai:AR (2.59) BS01 rna N/A N/A O01692 39209556
    900257 9cai:AS (2.59) BS01 rna N/A N/A O18240 39209556
    900258 9cai:AT (2.59) BS01 rna N/A N/A O18650 39209556
    900259 9cai:AU (2.59) BS01 rna N/A N/A Q8WQA8 39209556
    900260 9cai:AW (2.59) BS01 rna N/A N/A O17218 39209556
    900261 9cai:AX (2.59) BS01 rna N/A N/A Q19877 39209556
    900262 9cai:AY (2.59) BS01 rna N/A N/A Q1XFY9 39209556
    900263 9cai:AZ (2.59) BS01 rna N/A N/A P52821 39209556
    900264 9cai:Aa (2.59) BS01 rna N/A N/A O45499 39209556
    900265 9cai:Ab (2.59) BS01 rna N/A N/A Q9TXP0 39209556
    900266 9cai:Ac (2.59) BS01 rna N/A N/A Q95Y04 39209556
    900267 9cai:Ad (2.59) BS01 rna N/A N/A P90983 39209556
    900268 9cai:Ae (2.59) BS01 rna N/A N/A Q18231 39209556
    900269 9cai:Af (2.59) BS01 rna N/A N/A P37165 39209556
    900270 9cai:CA (2.59) BS01 rna N/A N/A Q9XVF7 39209556
    900271 9cai:CA (2.59) BS02 rna N/A N/A Q9XVF7 39209556
    900272 9cai:CB (2.59) BS01 rna N/A N/A P50880 39209556
    900273 9cai:CC (2.59) BS01 rna N/A N/A O02056 39209556
    900274 9cai:CC (2.59) BS02 rna N/A N/A O02056 39209556
    900275 9cai:CD (2.59) BS01 rna N/A N/A P49405 39209556
    900276 9cai:CD (2.59) BS02 rna N/A N/A P49405 39209556
    900277 9cai:CE (2.59) BS01 rna N/A N/A P47991 39209556
    900278 9cai:CF (2.59) BS01 rna N/A N/A O01802 39209556
    900279 9cai:CF (2.59) BS02 rna N/A N/A O01802 39209556
    900280 9cai:CG (2.59) BS01 rna N/A N/A Q966C6 39209556
    900281 9cai:CG (2.59) BS02 rna N/A N/A Q966C6 39209556
    900282 9cai:CH (2.59) BS01 rna N/A N/A Q95Y90 39209556
    900283 9cai:CI (2.59) BS01 rna N/A N/A Q09533 39209556
    900284 9cai:CI (2.59) BS02 rna N/A N/A Q09533 39209556
    900285 9cai:CI (2.59) BS03 rna N/A N/A Q09533 39209556
    900286 9cai:CJ (2.59) BS01 rna N/A N/A Q19162 39209556
    900287 9cai:CJ (2.59) BS02 rna N/A N/A Q19162 39209556
    900288 9cai:CJ (2.59) BS03 rna N/A N/A Q19162 39209556
    900289 9cai:CL (2.59) BS01 rna N/A N/A P91128 39209556
    900290 9cai:CM (2.59) BS01 rna N/A N/A Q9XVE9 39209556
    900291 9cai:CN (2.59) BS01 rna N/A N/A P91374 39209556
    900292 9cai:CN (2.59) BS02 rna N/A N/A P91374 39209556
    900293 9cai:CO (2.59) BS01 rna N/A N/A Q27389 39209556
    900294 9cai:CP (2.59) BS01 rna N/A N/A Q9BL19 39209556
    900295 9cai:CP (2.59) BS02 rna N/A N/A Q9BL19 39209556
    900296 9cai:CQ (2.59) BS01 rna N/A N/A O45946 39209556
    900297 9cai:CR (2.59) BS01 rna N/A N/A O02639 39209556
    900298 9cai:CR (2.59) BS02 rna N/A N/A O02639 39209556
    900299 9cai:CS (2.59) BS01 rna N/A N/A O44480 39209556
    900300 9cai:CS (2.59) BS02 rna N/A N/A O44480 39209556
    900301 9cai:CT (2.59) BS01 rna N/A N/A P34334 39209556
    900302 9cai:CT (2.59) BS02 rna N/A N/A P34334 39209556
    900303 9cai:CU (2.59) BS01 rna N/A N/A P52819 39209556
    900304 9cai:CV (2.59) BS01 rna N/A N/A P48158 39209556
    900305 9cai:CW (2.59) BS01 rna N/A N/A O01868 39209556
    900306 9cai:CX (2.59) BS01 rna N/A N/A Q20647 39209556
    900307 9cai:CX (2.59) BS02 rna N/A N/A Q20647 39209556
    900308 9cai:CY (2.59) BS01 rna N/A N/A Q19869 39209556
    900309 9cai:CY (2.59) BS02 rna N/A N/A Q19869 39209556
    900310 9cai:CZ (2.59) BS01 rna N/A N/A P91914 39209556
    900311 9cai:Ca (2.59) BS01 rna N/A N/A Q9BKU5 39209556
    900312 9cai:Cb (2.59) BS01 rna N/A N/A O45226 39209556
    900313 9cai:Cc (2.59) BS01 rna N/A N/A Q9XWS4 39209556
    900314 9cai:Cd (2.59) BS01 rna N/A N/A Q9U332 39209556
    900315 9cai:Ce (2.59) BS01 rna N/A N/A Q22716 39209556
    900316 9cai:Cf (2.59) BS01 rna N/A N/A P49180 39209556
    900317 9cai:Cg (2.59) BS01 rna N/A N/A A3QMC5 39209556
    900318 9cai:Ch (2.59) BS01 rna N/A N/A P34662 39209556
    900319 9cai:Ch (2.59) BS02 rna N/A N/A P34662 39209556
    900320 9cai:Ci (2.59) BS01 rna N/A N/A P49181 39209556
    900321 9cai:Cj (2.59) BS01 rna N/A N/A O62388 39209556
    900322 9cai:Cj (2.59) BS02 rna N/A N/A O62388 39209556
    900323 9cai:Ck (2.59) BS01 rna N/A N/A O17570 39209556
    900324 9cai:Cl (2.59) BS01 rna N/A N/A P52814 39209556
    900325 9cai:Cl (2.59) BS02 rna N/A N/A P52814 39209556
    900326 9cai:Cm (2.59) BS01 rna N/A N/A P49632 39209556
    900327 9cai:Co (2.59) BS01 rna N/A N/A P48166 39209556
    900328 9cai:Cp (2.59) BS01 rna N/A N/A Q9U2A8 39209556
    900329 9cbf:A (2.26) BS01 A1AVR N/A N/A F1QCV2 N/A
    900330 9cbf:A (2.26) BS02 ZN N/A N/A F1QCV2 N/A
    900331 9cbg:A (2.6) BS01 A1AVN N/A N/A F1QCV2 N/A
    900332 9cbg:A (2.6) BS02 ZN N/A N/A F1QCV2 N/A
    900333 9cbh:A (2.8) BS01 A1AVM N/A N/A F1QCV2 N/A
    900334 9cbh:A (2.8) BS02 ZN N/A N/A F1QCV2 N/A
    900335 9cbi:A (2.5) BS01 A1AVQ N/A N/A F1QCV2 N/A
    900336 9cbi:A (2.5) BS02 ZN N/A N/A F1QCV2 N/A
    900337 9cbj:A (2.48) BS01 A1AVP N/A N/A F1QCV2 N/A
    900338 9cbj:A (2.48) BS02 ZN N/A N/A F1QCV2 N/A
    900339 9cbk:A (1.46) BS01 A1AVM N/A N/A A7YT55 N/A
    900340 9cbk:A (1.46) BS02 ZN N/A N/A A7YT55 N/A
    900341 9cbk:B (1.46) BS01 A1AVM N/A N/A A7YT55 N/A
    900342 9cbk:B (1.46) BS02 ZN N/A N/A A7YT55 N/A
    900343 9cbl:R (2.8) BS01 ALE N/A N/A P00720
    P08913    		 39218975
    900344 9cbm:R (3.2) BS01 CZX N/A N/A P00720
    P08913    		 39218975
    900345 9cbt:A (1.95) BS01 ZN N/A N/A Q9NTG7 N/A
    900346 9cbt:A (1.95) BS02 5IA N/A N/A Q9NTG7 N/A
    900347 9cbt:A (1.95) BS03 5I7 N/A N/A Q9NTG7 N/A
    900348 9cbt:B (1.95) BS01 5IA N/A N/A Q9NTG7 N/A
    900349 9cbt:B (1.95) BS02 ZN N/A N/A Q9NTG7 N/A
    900350 9cbt:B (1.95) BS03 5I7 N/A N/A Q9NTG7 N/A
    900351 9cc0:A (3.31) BS01 peptide N/A N/A P36776 38979310
    900352 9cc0:A (3.31) BS02 ATP N/A N/A P36776 38979310
    900353 9cc0:A (3.31) BS03 MG N/A N/A P36776 38979310
    900354 9cc0:B (3.31) BS01 ATP N/A N/A P36776 38979310
    900355 9cc0:B (3.31) BS02 MG N/A N/A P36776 38979310
    900356 9cc0:C (3.31) BS01 peptide N/A N/A P36776 38979310
    900357 9cc0:C (3.31) BS02 ATP N/A N/A P36776 38979310
    900358 9cc0:C (3.31) BS03 MG N/A N/A P36776 38979310
    900359 9cc0:D (3.31) BS01 ATP N/A N/A P36776 38979310
    900360 9cc0:D (3.31) BS02 ATP N/A N/A P36776 38979310
    900361 9cc0:E (3.31) BS01 peptide N/A N/A P36776 38979310
    900362 9cc0:E (3.31) BS02 ADP N/A N/A P36776 38979310
    900363 9cc0:F (3.31) BS01 ADP N/A N/A P36776 38979310
    900364 9cc3:B (3.23) BS01 ADP N/A N/A P36776 38979310
    900365 9cc3:C (3.23) BS01 ADP N/A N/A P36776 38979310
    900366 9cc3:D (3.23) BS01 ADP N/A N/A P36776 38979310
    900367 9cc3:D (3.23) BS02 MG N/A N/A P36776 38979310
    900368 9cc3:E (3.23) BS01 ADP N/A N/A P36776 38979310
    900369 9cc8:A (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900370 9cc8:B (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900371 9cc8:C (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900372 9cc8:D (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900373 9cc8:E (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900374 9cc8:F (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900375 9cc9:A (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900376 9cc9:B (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900377 9cc9:C (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900378 9cc9:D (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900379 9cc9:E (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900380 9cc9:F (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900381 9cc9:G (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900382 9cc9:H (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900383 9cc9:I (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900384 9cc9:J (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900385 9cc9:K (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900386 9cc9:L (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    900387 9cd5:A (2.939) BS01 A1AV2 N/A N/A P11362 39258897
    900388 9cd5:B (2.939) BS01 A1AV2 N/A N/A P11362 39258897
    900389 9cd7:A (2.53) BS01 A1AV2 N/A N/A P22607 39258897
    900390 9cd7:B (2.53) BS01 A1AV2 N/A N/A P22607 39258897
    900391 9cd7:C (2.53) BS01 A1AV2 N/A N/A P22607 39258897
    900392 9ce4:A (1.31) BS01 A1AV4 N/A N/A O14757 39231262
    900393 9cer:P (4.7) BS01 rna N/A N/A L1JXG4
    P0AEX9    		 39208796
    900394 9cer:P (4.7) BS02 ZN N/A N/A L1JXG4
    P0AEX9    		 39208796
    900395 9ces:P (3.28) BS01 dna N/A N/A L1JXG4
    P0AEX9    		 39208796
    900396 9ces:P (3.28) BS02 dna N/A N/A L1JXG4
    P0AEX9    		 39208796
    900397 9ces:P (3.28) BS03 rna N/A N/A L1JXG4
    P0AEX9    		 39208796
    900398 9ces:P (3.28) BS04 ZN N/A N/A L1JXG4
    P0AEX9    		 39208796
    900399 9cet:P (3.0) BS01 dna N/A N/A L1JXG4
    P0AEX9    		 39208796
    900400 9cet:P (3.0) BS02 dna N/A N/A L1JXG4
    P0AEX9    		 39208796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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