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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899601 9bht:E (3.26) BS01 GTP N/A GO:0003924 ... F6V5P8 38960133
    899602 9bht:E (3.26) BS02 GDP N/A GO:0003924 ... F6V5P8 38960133
    899603 9bht:F (3.26) BS01 GDP N/A N/A N/A 38960133
    899604 9bhw:A (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    899605 9bhw:A (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    899606 9bhw:B (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    899607 9bhw:B (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    899608 9bhw:C (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    899609 9bhw:C (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    899610 9bhw:D (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    899611 9bhw:D (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    899612 9bib:A (3.81) BS01 GLY N/A N/A P35439 N/A
    899613 9bib:B (3.81) BS01 GLU N/A N/A G3V746 N/A
    899614 9bib:C (3.81) BS01 GLY N/A N/A P35439 N/A
    899615 9bib:D (3.81) BS01 GLU N/A N/A G3V746 N/A
    899616 9bir:A (3.1) BS01 A1APP N/A GO:0005886 ... Q63424 N/A
    899617 9bis:A (3.2) BS01 AXL N/A GO:0005886 ... Q63424 N/A
    899618 9bit:A (3.1) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    899619 9biu:A (2.9) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    899620 9biw:A (2.496) BS01 CA N/A N/A N/A N/A
    899621 9biw:A (2.496) BS02 CA N/A N/A N/A N/A
    899622 9biw:A (2.496) BS03 CA N/A N/A N/A N/A
    899623 9biw:A (2.496) BS04 CA N/A N/A N/A N/A
    899624 9biw:B (2.496) BS01 CA N/A N/A N/A N/A
    899625 9bja:A (2.1) BS01 IHP N/A N/A P18177 N/A
    899626 9bja:B (2.1) BS01 IHP N/A N/A P18177 N/A
    899627 9bjk:R (3.26) BS01 A1APV N/A GO:0001965 ... P42866 38961287
    899628 9bjk:R (3.26) BS02 A1APU N/A GO:0001965 ... P42866 38961287
    899629 9bjm:A (2.07) BS01 A1APZ N/A N/A M1E1E4
    W8RJF9    		 38932487
    899630 9bju:C (2.47) BS01 peptide ? N/A P40337 N/A
    899631 9bju:F (2.47) BS01 peptide ? N/A P40337 N/A
    899632 9bju:I (2.47) BS01 peptide ? N/A P40337 N/A
    899633 9bju:K (2.47) BS01 TFA ? N/A Q15369 N/A
    899634 9bju:L (2.47) BS01 peptide ? N/A P40337 N/A
    899635 9bjy:A (1.58) BS01 TMO N/A N/A Q9HUA0 N/A
    899636 9bk2:A (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    899637 9bk2:D (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    899638 9bk3:D (2.4) BS01 A1AR0 N/A GO:0004459 ... P00338 38925013
    899639 9bk4:A (2.08) BS01 PYR N/A N/A A0A069Q0R8 N/A
    899640 9bk4:B (2.08) BS01 PYR N/A N/A A0A069Q0R8 N/A
    899641 9bk8:A (1.67) BS01 2KT N/A N/A A0A069Q0R8 N/A
    899642 9bkd:B (2.6) BS01 rna N/A N/A P62280 39117603
    899643 9bkd:C (2.6) BS01 rna N/A N/A P62701 39117603
    899644 9bkd:D (2.6) BS01 rna N/A N/A P46781 39117603
    899645 9bkd:E (2.6) BS01 rna N/A N/A P62266 39117603
    899646 9bkd:F (2.6) BS01 rna N/A N/A P62861 39117603
    899647 9bkd:G (2.6) BS01 rna N/A N/A P62081 39117603
    899648 9bkd:H (2.6) BS01 rna N/A N/A P42677 39117603
    899649 9bkd:I (2.6) BS01 rna N/A N/A P62277 39117603
    899650 9bkd:J (2.6) BS01 rna N/A N/A P62244 39117603
    899651 9bkd:L (2.6) BS01 rna N/A N/A P15880 39117603
    899652 9bkd:M (2.6) BS01 rna N/A N/A P08708 39117603
    899653 9bkd:N (2.6) BS01 rna N/A N/A P08865 39117603
    899654 9bkd:O (2.6) BS01 rna N/A N/A P61247 39117603
    899655 9bkd:P (2.6) BS01 rna N/A N/A P62263 39117603
    899656 9bkd:Q (2.6) BS01 rna N/A N/A P62854 39117603
    899657 9bkd:Q (2.6) BS02 ZN N/A N/A P62854 39117603
    899658 9bkd:R (2.6) BS01 rna N/A N/A P62241 39117603
    899659 9bkd:S (2.6) BS01 rna N/A N/A P62753 39117603
    899660 9bkd:T (2.6) BS01 rna N/A N/A P62847 39117603
    899661 9bkd:U (2.6) BS01 rna N/A N/A Q53EL6 39117603
    899662 9bkd:V (2.6) BS01 rna N/A N/A P46782 39117603
    899663 9bkd:Y (2.6) BS01 rna N/A N/A P62249 39117603
    899664 9bkd:Z (2.6) BS01 rna N/A N/A P23396 39117603
    899665 9bkd:a (2.6) BS01 rna N/A N/A P46783 39117603
    899666 9bkd:b (2.6) BS01 rna N/A N/A P62841 39117603
    899667 9bkd:c (2.6) BS01 rna N/A N/A P63244 39117603
    899668 9bkd:d (2.6) BS01 rna N/A N/A P39019 39117603
    899669 9bkd:e (2.6) BS01 rna N/A N/A P62851 39117603
    899670 9bkd:f (2.6) BS01 rna N/A N/A P62269 39117603
    899671 9bkd:f (2.6) BS02 MG N/A N/A P62269 39117603
    899672 9bkd:h (2.6) BS01 rna N/A N/A P60866 39117603
    899673 9bkd:i (2.6) BS01 rna N/A N/A P62273 39117603
    899674 9bkd:i (2.6) BS02 ZN N/A N/A P62273 39117603
    899675 9bkd:k (2.6) BS01 rna N/A N/A P62979 39117603
    899676 9bkd:k (2.6) BS02 ZN N/A N/A P62979 39117603
    899677 9bkd:m (2.6) BS01 rna N/A N/A P25398 39117603
    899678 9bkd:n (2.6) BS01 rna N/A N/A P62857 39117603
    899679 9bkj:R (2.59) BS01 peptide ? GO:0001764 ... P32238 39083706
    899680 9bkk:R (2.51) BS01 peptide ? GO:0001764 ... P32238 39083706
    899681 9bkl:A (1.7) BS01 CO ? GO:0009055 ... P24297 N/A
    899682 9bkm:A (2.08) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    899683 9bkm:A (2.08) BS02 A1AQM N/A GO:0004151 ... Q02127 38889244
    899684 9bkn:A (1.3) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    899685 9bkn:A (1.3) BS02 A1AQK N/A GO:0004151 ... Q02127 38889244
    899686 9bko:A (1.44) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    899687 9bko:A (1.44) BS02 A1AQL N/A GO:0004151 ... Q02127 38889244
    899688 9bkp:A (1.8) BS01 FE ? GO:0009055 ... P24297 N/A
    899689 9bkq:A (2.1) BS01 A1AQN N/A N/A A0A068EGP0 39197447
    899690 9bkq:D (2.1) BS01 A1AQN N/A N/A A0A068EGP0 39197447
    899691 9bkr:A (1.4) BS01 ATP N/A N/A Q14669 N/A
    899692 9bks:A (1.17) BS01 ADP N/A N/A Q14669 N/A
    899693 9bkt:A (1.8) BS01 FE2 ? GO:0009055 ... P24297 N/A
    899694 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    899695 9bkz:A (2.35) BS02 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    899696 9bkz:B (2.35) BS01 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    899697 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    899698 9blg:A (2.06) BS01 A1AQ1 3.1.3.48 N/A Q06124 37269335
    899699 9blg:B (2.06) BS01 A1AQ1 3.1.3.48 N/A Q06124 37269335
    899700 9bln:B (3.9) BS01 rna N/A N/A P62280 39117603
    899701 9bln:C (3.9) BS01 rna N/A N/A P62701 39117603
    899702 9bln:D (3.9) BS01 rna N/A N/A P46781 39117603
    899703 9bln:E (3.9) BS01 rna N/A N/A P62266 39117603
    899704 9bln:F (3.9) BS01 rna N/A N/A P62861 39117603
    899705 9bln:G (3.9) BS01 rna N/A N/A P62081 39117603
    899706 9bln:H (3.9) BS01 rna N/A N/A P42677 39117603
    899707 9bln:I (3.9) BS01 rna N/A N/A P62277 39117603
    899708 9bln:J (3.9) BS01 rna N/A N/A P62244 39117603
    899709 9bln:L (3.9) BS01 rna N/A N/A P15880 39117603
    899710 9bln:M (3.9) BS01 rna N/A N/A P08708 39117603
    899711 9bln:N (3.9) BS01 rna N/A N/A P08865 39117603
    899712 9bln:O (3.9) BS01 rna N/A N/A P61247 39117603
    899713 9bln:P (3.9) BS01 rna N/A N/A P62263 39117603
    899714 9bln:Q (3.9) BS01 rna N/A N/A P62854 39117603
    899715 9bln:Q (3.9) BS02 ZN N/A N/A P62854 39117603
    899716 9bln:R (3.9) BS01 rna N/A N/A P62241 39117603
    899717 9bln:S (3.9) BS01 rna N/A N/A P62753 39117603
    899718 9bln:T (3.9) BS01 rna N/A N/A P62847 39117603
    899719 9bln:V (3.9) BS01 rna N/A N/A P46782 39117603
    899720 9bln:W (3.9) BS01 rna N/A N/A P41567 39117603
    899721 9bln:Y (3.9) BS01 rna N/A N/A P62249 39117603
    899722 9bln:Z (3.9) BS01 rna N/A N/A P23396 39117603
    899723 9bln:a (3.9) BS01 rna N/A N/A P46783 39117603
    899724 9bln:b (3.9) BS01 rna N/A N/A P62841 39117603
    899725 9bln:c (3.9) BS01 rna N/A N/A P63244 39117603
    899726 9bln:d (3.9) BS01 rna N/A N/A P39019 39117603
    899727 9bln:e (3.9) BS01 rna N/A N/A P62851 39117603
    899728 9bln:f (3.9) BS01 rna N/A N/A P62269 39117603
    899729 9bln:h (3.9) BS01 rna N/A N/A P60866 39117603
    899730 9bln:i (3.9) BS01 rna N/A N/A P62273 39117603
    899731 9bln:i (3.9) BS02 ZN N/A N/A P62273 39117603
    899732 9bln:k (3.9) BS01 rna N/A N/A P62979 39117603
    899733 9bln:k (3.9) BS02 ZN N/A N/A P62979 39117603
    899734 9bln:m (3.9) BS01 rna N/A N/A P25398 39117603
    899735 9bln:n (3.9) BS01 rna N/A N/A P62857 39117603
    899736 9bln:p (3.9) BS01 rna N/A N/A Q53EL6 39117603
    899737 9bln:x (3.9) BS01 rna N/A N/A O15371 39117603
    899738 9bn8:A (1.35) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    899739 9bn8:A (1.35) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    899740 9bn9:A (1.23) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    899741 9bn9:A (1.23) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    899742 9bn9:A (1.23) BS03 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    899743 9bnj:A (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    899744 9bnj:A (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    899745 9bnj:A (1.51) BS03 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    899746 9bnj:B (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    899747 9bnj:B (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    899748 9bnj:C (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    899749 9bnj:C (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    899750 9bnj:D (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    899751 9bnj:D (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    899752 9bnq:A (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    899753 9bnq:B (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    899754 9bnq:C (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    899755 9bnr:A (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    899756 9bnr:B (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    899757 9bnr:C (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    899758 9boh:A (2.0) BS01 A1AQW N/A N/A Q5SI56 39148791
    899759 9boh:A (2.0) BS02 FFO N/A N/A Q5SI56 39148791
    899760 9boh:B (2.0) BS01 A1AQW N/A N/A Q5SI56 39148791
    899761 9boh:B (2.0) BS02 FFO N/A N/A Q5SI56 39148791
    899762 9bol:C (1.99) BS01 A1ARP ? N/A P40337 N/A
    899763 9bol:F (1.99) BS01 A1ARP ? N/A P40337 N/A
    899764 9boo:A (1.5) BS01 YDL N/A N/A K9N638 39211604
    899765 9boq:A (3.33) BS01 ADP N/A N/A P55072 39122922
    899766 9boq:A (3.33) BS02 ADP N/A N/A P55072 39122922
    899767 9boq:A (3.33) BS03 XKM N/A N/A P55072 39122922
    899768 9boq:B (3.33) BS01 ADP N/A N/A P55072 39122922
    899769 9boq:B (3.33) BS02 ADP N/A N/A P55072 39122922
    899770 9boq:B (3.33) BS03 XKM N/A N/A P55072 39122922
    899771 9boq:C (3.33) BS01 ADP N/A N/A P55072 39122922
    899772 9boq:C (3.33) BS02 ADP N/A N/A P55072 39122922
    899773 9boq:C (3.33) BS03 XKM N/A N/A P55072 39122922
    899774 9boq:D (3.33) BS01 ADP N/A N/A P55072 39122922
    899775 9boq:D (3.33) BS02 ADP N/A N/A P55072 39122922
    899776 9boq:D (3.33) BS03 XKM N/A N/A P55072 39122922
    899777 9boq:E (3.33) BS01 ADP N/A N/A P55072 39122922
    899778 9boq:E (3.33) BS02 ADP N/A N/A P55072 39122922
    899779 9boq:E (3.33) BS03 XKM N/A N/A P55072 39122922
    899780 9boq:F (3.33) BS01 ADP N/A N/A P55072 39122922
    899781 9boq:F (3.33) BS02 ADP N/A N/A P55072 39122922
    899782 9boq:F (3.33) BS03 XKM N/A N/A P55072 39122922
    899783 9boq:G (3.33) BS01 ADP N/A N/A P55072 39122922
    899784 9boq:G (3.33) BS02 ADP N/A N/A P55072 39122922
    899785 9boq:G (3.33) BS03 XKM N/A N/A P55072 39122922
    899786 9boq:H (3.33) BS01 ADP N/A N/A P55072 39122922
    899787 9boq:H (3.33) BS02 ADP N/A N/A P55072 39122922
    899788 9boq:H (3.33) BS03 XKM N/A N/A P55072 39122922
    899789 9boq:I (3.33) BS01 ADP N/A N/A P55072 39122922
    899790 9boq:I (3.33) BS02 ADP N/A N/A P55072 39122922
    899791 9boq:I (3.33) BS03 XKM N/A N/A P55072 39122922
    899792 9boq:J (3.33) BS01 ADP N/A N/A P55072 39122922
    899793 9boq:J (3.33) BS02 ADP N/A N/A P55072 39122922
    899794 9boq:J (3.33) BS03 XKM N/A N/A P55072 39122922
    899795 9boq:K (3.33) BS01 ADP N/A N/A P55072 39122922
    899796 9boq:K (3.33) BS02 ADP N/A N/A P55072 39122922
    899797 9boq:K (3.33) BS03 XKM N/A N/A P55072 39122922
    899798 9boq:L (3.33) BS01 ADP N/A N/A P55072 39122922
    899799 9boq:L (3.33) BS02 ADP N/A N/A P55072 39122922
    899800 9boq:L (3.33) BS03 XKM N/A N/A P55072 39122922
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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