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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897001 8z9h:H (2.7) BS02 V9G ? GO:0042025 ... P27194 38816392
    897002 8z9h:I (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    897003 8z9q:A (2.33) BS01 rna ? GO:0042025 ... P27194 38816392
    897004 8z9q:B (2.33) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    897005 8z9r:A (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    897006 8z9r:A (2.58) BS02 rna ? GO:0042025 ... P27194 38816392
    897007 8z9r:A (2.58) BS03 rna ? GO:0042025 ... P27194 38816392
    897008 8z9r:B (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    897009 8z9r:B (2.58) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    897010 8z9r:B (2.58) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    897011 8z9r:B (2.58) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    897012 8z9r:C (2.58) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    897013 8z9r:C (2.58) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    897014 8z9r:H (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    897015 8z9r:I (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    897016 8z9x:A (2.96) BS01 A1L1A N/A N/A P28288 N/A
    897017 8z9x:B (2.96) BS01 A1L1A N/A N/A P28288 N/A
    897018 8zam:A (2.5) BS01 L9Q N/A N/A Q8RUT8 39181878
    897019 8zam:B (2.5) BS01 L9Q N/A N/A Q8RUT8 39181878
    897020 8zan:A (2.4) BS01 RET N/A N/A Q8RUT8 39181878
    897021 8zan:B (2.4) BS01 RET N/A N/A Q8RUT8 39181878
    897022 8zao:A (2.6) BS01 RET N/A N/A N/A 39181878
    897023 8zao:B (2.6) BS01 RET N/A N/A N/A 39181878
    897024 8zao:C (2.6) BS01 RET N/A N/A N/A 39181878
    897025 8zap:A (2.6) BS01 RET N/A N/A N/A 39181878
    897026 8zap:B (2.6) BS01 RET N/A N/A N/A 39181878
    897027 8zap:C (2.6) BS01 RET N/A N/A N/A 39181878
    897028 8zaq:A (2.6) BS01 RET N/A N/A N/A 39181878
    897029 8zaq:B (2.6) BS01 RET N/A N/A N/A 39181878
    897030 8zaq:C (2.6) BS01 RET N/A N/A N/A 39181878
    897031 8zav:A (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    897032 8zav:B (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    897033 8zb8:A (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    897034 8zb8:A (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    897035 8zb8:A (2.94) BS03 A1D8I N/A GO:0000226 ... Q2XVP4 N/A
    897036 8zb8:B (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    897037 8zb8:B (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    897038 8zb8:C (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    897039 8zb8:C (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    897040 8zb8:D (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    897041 8zb8:D (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    897042 8zb8:F (2.94) BS01 ACP N/A GO:0046872 ... A0A8V0Z8P0 N/A
    897043 8zbe:A (3.24) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    897044 8zc9:A (3.14) BS01 NAD N/A N/A D4G637 39039073
    897045 8zc9:B (3.14) BS01 NAD N/A N/A D4G637 39039073
    897046 8zc9:D (3.14) BS01 NAD N/A N/A D4G637 39039073
    897047 8zc9:E (3.14) BS01 NAD N/A N/A D4G637 39039073
    897048 8zcj:G (3.09) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    897049 8zck:A (2.0) BS01 GAL ? N/A P0DOX5 N/A
    897050 8zck:B (2.0) BS01 BMA ? N/A P0DOX5 N/A
    897051 8zcl:A (2.6) BS01 GAL ? N/A P0DOX5 N/A
    897052 8zcl:A (2.6) BS02 FUL ? N/A P0DOX5 N/A
    897053 8zcm:A (2.64) BS01 GAL ? N/A P0DOX5 N/A
    897054 8zdv:A (2.8) BS01 SIA N/A N/A A0A8E4ZAK5 N/A
    897055 8zdv:B (2.8) BS01 SIA N/A N/A A0A8E4ZAK5 N/A
    897056 8zdv:C (2.8) BS01 SIA N/A N/A A0A8E4ZAK5 N/A
    897057 8zdw:A (3.45) BS01 SIA N/A N/A Q6DQ33 N/A
    897058 8zdw:C (3.45) BS01 SIA N/A N/A Q6DQ33 N/A
    897059 8zdw:H (3.45) BS01 SIA N/A N/A Q6DQ33 N/A
    897060 8zee:A (2.9) BS01 BCT N/A GO:0005506 ... P07753 38890314
    897061 8zee:A (2.9) BS02 CLA N/A GO:0005506 ... P07753 38890314
    897062 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    897063 8zee:A (2.9) BS04 FE2 N/A GO:0005506 ... P07753 38890314
    897064 8zee:A (2.9) BS05 CLA N/A GO:0005506 ... P07753 38890314
    897065 8zee:A (2.9) BS06 CLA N/A GO:0005506 ... P07753 38890314
    897066 8zee:A (2.9) BS07 CLA N/A GO:0005506 ... P07753 38890314
    897067 8zee:B (2.9) BS01 CLA N/A GO:0009507 ... P37255 38890314
    897068 8zee:B (2.9) BS02 CLA N/A GO:0009507 ... P37255 38890314
    897069 8zee:B (2.9) BS03 CLA N/A GO:0009507 ... P37255 38890314
    897070 8zee:B (2.9) BS04 CLA N/A GO:0009507 ... P37255 38890314
    897071 8zee:B (2.9) BS05 CLA N/A GO:0009507 ... P37255 38890314
    897072 8zee:B (2.9) BS06 CLA N/A GO:0009507 ... P37255 38890314
    897073 8zee:B (2.9) BS07 CLA N/A GO:0009507 ... P37255 38890314
    897074 8zee:B (2.9) BS08 CLA N/A GO:0009507 ... P37255 38890314
    897075 8zee:B (2.9) BS09 CLA N/A GO:0009507 ... P37255 38890314
    897076 8zee:B (2.9) BS10 CLA N/A GO:0009507 ... P37255 38890314
    897077 8zee:B (2.9) BS11 CLA N/A GO:0009507 ... P37255 38890314
    897078 8zee:B (2.9) BS12 CLA N/A GO:0009507 ... P37255 38890314
    897079 8zee:B (2.9) BS13 CLA N/A GO:0009507 ... P37255 38890314
    897080 8zee:B (2.9) BS14 CLA N/A GO:0009507 ... P37255 38890314
    897081 8zee:B (2.9) BS15 CLA N/A GO:0009507 ... P37255 38890314
    897082 8zee:C (2.9) BS01 CLA N/A GO:0005737 ... P10898 38890314
    897083 8zee:C (2.9) BS02 CLA N/A GO:0005737 ... P10898 38890314
    897084 8zee:C (2.9) BS03 CLA N/A GO:0005737 ... P10898 38890314
    897085 8zee:C (2.9) BS04 CLA N/A GO:0005737 ... P10898 38890314
    897086 8zee:C (2.9) BS05 CLA N/A GO:0005737 ... P10898 38890314
    897087 8zee:C (2.9) BS06 CLA N/A GO:0005737 ... P10898 38890314
    897088 8zee:C (2.9) BS07 CLA N/A GO:0005737 ... P10898 38890314
    897089 8zee:C (2.9) BS08 CLA N/A GO:0005737 ... P10898 38890314
    897090 8zee:C (2.9) BS09 CLA N/A GO:0005737 ... P10898 38890314
    897091 8zee:C (2.9) BS10 CLA N/A GO:0005737 ... P10898 38890314
    897092 8zee:C (2.9) BS11 CLA N/A GO:0005737 ... P10898 38890314
    897093 8zee:C (2.9) BS12 CLA N/A GO:0005737 ... P10898 38890314
    897094 8zee:C (2.9) BS13 CLA N/A GO:0005737 ... P10898 38890314
    897095 8zee:D (2.9) BS01 CLA N/A GO:0005506 ... P06007 38890314
    897096 8zee:D (2.9) BS02 BCT N/A GO:0005506 ... P06007 38890314
    897097 8zee:D (2.9) BS03 CLA N/A GO:0005506 ... P06007 38890314
    897098 8zee:D (2.9) BS04 CLA N/A GO:0005506 ... P06007 38890314
    897099 8zee:D (2.9) BS05 CLA N/A GO:0005506 ... P06007 38890314
    897100 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    897101 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    897102 8zee:D (2.9) BS08 FE2 N/A GO:0005506 ... P06007 38890314
    897103 8zee:D (2.9) BS09 CLA N/A GO:0005506 ... P06007 38890314
    897104 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    897105 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    897106 8zee:F (2.9) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    897107 8zee:H (2.9) BS01 CLA N/A GO:0009507 ... P22666 38890314
    897108 8zee:H (2.9) BS02 CLA N/A GO:0009507 ... P22666 38890314
    897109 8zee:H (2.9) BS03 CLA N/A GO:0009507 ... P22666 38890314
    897110 8zee:I (2.9) BS01 CLA N/A GO:0005737 ... P59763 38890314
    897111 8zee:X (2.9) BS01 VTQ N/A GO:0009523 ... A8I846 38890314
    897112 8zf1:A (2.6) BS01 U1O N/A N/A A2RI36 38976645
    897113 8zfk:A (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897114 8zfk:A (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897115 8zfk:B (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897116 8zfk:B (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897117 8zfk:C (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897118 8zfk:C (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897119 8zfk:D (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897120 8zfk:D (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897121 8zfk:E (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897122 8zfk:E (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    897123 8zfn:A (2.54) BS01 GW9 N/A N/A P37231 N/A
    897124 8zfn:A (2.54) BS02 PLB N/A N/A P37231 N/A
    897125 8zfn:B (2.54) BS01 GW9 N/A N/A P37231 N/A
    897126 8zfn:B (2.54) BS02 PLB N/A N/A P37231 N/A
    897127 8zfo:A (3.15) BS01 NZA N/A N/A P37231 N/A
    897128 8zfo:B (3.15) BS01 GW9 N/A N/A P37231 N/A
    897129 8zfo:B (3.15) BS02 NZA N/A N/A P37231 N/A
    897130 8zfp:A (2.48) BS01 GW9 N/A N/A P37231 N/A
    897131 8zfp:A (2.48) BS02 241 N/A N/A P37231 N/A
    897132 8zfp:B (2.48) BS01 GW9 N/A N/A P37231 N/A
    897133 8zfp:B (2.48) BS02 241 N/A N/A P37231 N/A
    897134 8zfq:A (2.49) BS01 EEY N/A N/A P37231 N/A
    897135 8zfq:A (2.49) BS02 PLB N/A N/A P37231 N/A
    897136 8zfq:B (2.49) BS01 EEY N/A N/A P37231 N/A
    897137 8zfq:B (2.49) BS02 PLB N/A N/A P37231 N/A
    897138 8zfr:B (2.73) BS01 EEY N/A N/A P37231 N/A
    897139 8zfr:B (2.73) BS02 NZA N/A N/A P37231 N/A
    897140 8zfs:A (2.56) BS01 EEY N/A N/A P37231 N/A
    897141 8zfs:A (2.56) BS02 241 N/A N/A P37231 N/A
    897142 8zfs:B (2.56) BS01 EEY N/A N/A P37231 N/A
    897143 8zfs:B (2.56) BS02 241 N/A N/A P37231 N/A
    897144 8zft:A (3.2) BS01 EEY N/A N/A P37231 N/A
    897145 8zft:A (3.2) BS02 3JX N/A N/A P37231 N/A
    897146 8zft:B (3.2) BS01 EEY N/A N/A P37231 N/A
    897147 8zft:B (3.2) BS02 3JX N/A N/A P37231 N/A
    897148 8zfw:A (2.18) BS01 MG N/A N/A A0A077EWA5 N/A
    897149 8zfw:A (2.18) BS02 SAH N/A N/A A0A077EWA5 N/A
    897150 8zfw:B (2.18) BS01 A1LU2 N/A N/A A0A077EWA5 N/A
    897151 8zfw:B (2.18) BS02 MG N/A N/A A0A077EWA5 N/A
    897152 8zfw:B (2.18) BS03 SAH N/A N/A A0A077EWA5 N/A
    897153 8zgs:B (3.04) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    897154 8zgt:B (2.96) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    897155 8zh4:A (1.82) BS01 A1L1V N/A N/A P12497 38942126
    897156 8zh8:R (3.19) BS01 peptide N/A N/A Q96P65 38897996
    897157 8zha:A (1.95) BS01 A1L1W N/A N/A P12497 38942126
    897158 8zhy:A (2.7) BS01 ZN N/A N/A B7WRJ7 N/A
    897159 8zhy:B (2.7) BS01 MG N/A N/A B7WRJ7 N/A
    897160 8zhy:D (2.7) BS01 ZN N/A N/A B7WRJ7 N/A
    897161 8zhy:D (2.7) BS02 MG N/A N/A B7WRJ7 N/A
    897162 8zi8:A (2.65) BS01 GTQ N/A N/A B7WRJ7 N/A
    897163 8zi8:A (2.65) BS02 ZN N/A N/A B7WRJ7 N/A
    897164 8zi8:C (2.65) BS01 ZN N/A N/A B7WRJ7 N/A
    897165 8zi8:D (2.65) BS01 GTQ N/A N/A B7WRJ7 N/A
    897166 8zi8:D (2.65) BS02 ZN N/A N/A B7WRJ7 N/A
    897167 8zj0:B (2.9) BS01 ZN N/A N/A B7WRJ7 N/A
    897168 8zj0:C (2.9) BS01 ZN N/A N/A B7WRJ7 N/A
    897169 8zj0:D (2.9) BS01 3HB N/A N/A B7WRJ7 N/A
    897170 8zj0:D (2.9) BS02 ZN N/A N/A B7WRJ7 N/A
    897171 8zj2:D (4.66) BS01 MG N/A GO:0003924 ... P84095 38857861
    897172 8zj2:D (4.66) BS02 GTP N/A GO:0003924 ... P84095 38857861
    897173 8zj3:A (2.9) BS01 ZN N/A N/A B7WRJ7 N/A
    897174 8zj3:A (2.9) BS02 MG N/A N/A B7WRJ7 N/A
    897175 8zj3:A (2.9) BS03 MG N/A N/A B7WRJ7 N/A
    897176 8zj3:B (2.9) BS01 MG N/A N/A B7WRJ7 N/A
    897177 8zj3:C (2.9) BS01 ZN N/A N/A B7WRJ7 N/A
    897178 8zj3:D (2.9) BS01 ZN N/A N/A B7WRJ7 N/A
    897179 8zj5:B (2.8) BS01 ZN N/A N/A B7WRJ7 N/A
    897180 8zj5:C (2.8) BS01 ZN N/A N/A B7WRJ7 N/A
    897181 8zj5:D (2.8) BS01 ZN N/A N/A B7WRJ7 N/A
    897182 8zj7:A (2.65) BS01 MG N/A N/A B7WRJ7 N/A
    897183 8zj7:A (2.65) BS02 NAD N/A N/A B7WRJ7 N/A
    897184 8zj7:A (2.65) BS03 ZN N/A N/A B7WRJ7 N/A
    897185 8zj7:B (2.65) BS01 NAD N/A N/A B7WRJ7 N/A
    897186 8zj7:C (2.65) BS01 ZN N/A N/A B7WRJ7 N/A
    897187 8zj7:C (2.65) BS02 MG N/A N/A B7WRJ7 N/A
    897188 8zj7:D (2.65) BS01 ZN N/A N/A B7WRJ7 N/A
    897189 8zjd:R (3.06) BS01 peptide N/A N/A Q969F8 N/A
    897190 8zje:R (3.07) BS01 peptide N/A GO:0004930 ... Q969F8 N/A
    897191 8zjf:B (2.7) BS01 MG ? N/A P26010 38781659
    897192 8zjf:B (2.7) BS02 CA ? N/A P26010 38781659
    897193 8zjf:B (2.7) BS03 CA ? N/A P26010 38781659
    897194 8zjv:A (1.8) BS01 5ID 2.7.11.24 GO:0000165 ... P28482 N/A
    897195 8zkc:A (2.85) BS01 MG ? GO:0005524 ... P0AF08 38797154
    897196 8zkd:A (2.05) BS01 ANP N/A N/A Q04912 N/A
    897197 8zkd:A (2.05) BS02 MG N/A N/A Q04912 N/A
    897198 8zkk:B (3.6) BS01 peptide N/A N/A N/A N/A
    897199 8zkm:B (6.7) BS01 peptide N/A N/A N/A N/A
    897200 8zkm:C (6.7) BS01 peptide N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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