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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    894801 8xx9:A (1.55) BS01 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894802 8xx9:A (1.55) BS02 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894803 8xxa:A (1.55) BS01 BGC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894804 8xxa:A (1.55) BS02 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894805 8xxa:A (1.55) BS03 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894806 8xxa:A (1.55) BS04 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894807 8xxa:A (1.55) BS05 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894808 8xxa:A (1.55) BS06 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894809 8xxa:A (1.55) BS07 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894810 8xxa:A (1.55) BS08 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894811 8xxa:A (1.55) BS09 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    894812 8xxl:CD (2.9) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    894813 8xxl:SA (2.9) BS01 rna ? GO:0000028 ... P08865 38641729
    894814 8xxl:SB (2.9) BS01 rna ? GO:0002181 ... P61247 38641729
    894815 8xxl:SC (2.9) BS01 rna ? GO:0002181 ... P15880 38641729
    894816 8xxl:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    894817 8xxl:SE (2.9) BS01 rna ? GO:0002181 ... P62701 38641729
    894818 8xxl:SF (2.9) BS01 rna ? GO:0000028 ... P46782 38641729
    894819 8xxl:SG (2.9) BS01 rna ? GO:0000082 ... P62753 38641729
    894820 8xxl:SH (2.9) BS01 rna ? GO:0001843 ... P62081 38641729
    894821 8xxl:SI (2.9) BS01 rna ? GO:0000462 ... P62241 38641729
    894822 8xxl:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 38641729
    894823 8xxl:SK (2.9) BS01 rna ? GO:0002181 ... P46783 38641729
    894824 8xxl:SL (2.9) BS01 rna ? GO:0002181 ... P62280 38641729
    894825 8xxl:SM (2.9) BS01 rna ? GO:0002181 ... P25398 38641729
    894826 8xxl:SN (2.9) BS01 rna ? GO:0002181 ... P62277 38641729
    894827 8xxl:SO (2.9) BS01 rna ? GO:0000028 ... P62263 38641729
    894828 8xxl:SP (2.9) BS01 rna ? GO:0000028 ... P62841 38641729
    894829 8xxl:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 38641729
    894830 8xxl:SR (2.9) BS01 rna ? GO:0002181 ... P08708 38641729
    894831 8xxl:SS (2.9) BS01 rna ? GO:0002181 ... P62269 38641729
    894832 8xxl:ST (2.9) BS01 rna ? GO:0000028 ... P39019 38641729
    894833 8xxl:SU (2.9) BS01 rna ? GO:0002181 ... P60866 38641729
    894834 8xxl:SW (2.9) BS01 rna ? GO:0002181 ... P62244 38641729
    894835 8xxl:SX (2.9) BS01 rna ? GO:0002181 ... P62266 38641729
    894836 8xxl:SY (2.9) BS01 rna ? GO:0002181 ... P62847 38641729
    894837 8xxl:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 38641729
    894838 8xxl:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 38641729
    894839 8xxl:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 38641729
    894840 8xxl:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 38641729
    894841 8xxl:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 38641729
    894842 8xxl:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 38641729
    894843 8xxl:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 38641729
    894844 8xxl:Se (2.9) BS01 rna ? GO:0003735 ... P62861 38641729
    894845 8xxl:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 38641729
    894846 8xxl:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 38641729
    894847 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729
    894848 8xxm:CD (3.2) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    894849 8xxm:SA (3.2) BS01 rna ? GO:0000028 ... P08865 38641729
    894850 8xxm:SB (3.2) BS01 rna ? GO:0002181 ... P61247 38641729
    894851 8xxm:SC (3.2) BS01 rna ? GO:0002181 ... P15880 38641729
    894852 8xxm:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    894853 8xxm:SE (3.2) BS01 rna ? GO:0002181 ... P62701 38641729
    894854 8xxm:SF (3.2) BS01 rna ? GO:0000028 ... P46782 38641729
    894855 8xxm:SG (3.2) BS01 rna ? GO:0000082 ... P62753 38641729
    894856 8xxm:SH (3.2) BS01 rna ? GO:0001843 ... P62081 38641729
    894857 8xxm:SI (3.2) BS01 rna ? GO:0000462 ... P62241 38641729
    894858 8xxm:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 38641729
    894859 8xxm:SK (3.2) BS01 rna ? GO:0002181 ... P46783 38641729
    894860 8xxm:SL (3.2) BS01 rna ? GO:0002181 ... P62280 38641729
    894861 8xxm:SM (3.2) BS01 rna ? GO:0002181 ... P25398 38641729
    894862 8xxm:SN (3.2) BS01 rna ? GO:0002181 ... P62277 38641729
    894863 8xxm:SO (3.2) BS01 rna ? GO:0000028 ... P62263 38641729
    894864 8xxm:SP (3.2) BS01 rna ? GO:0000028 ... P62841 38641729
    894865 8xxm:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 38641729
    894866 8xxm:SR (3.2) BS01 rna ? GO:0002181 ... P08708 38641729
    894867 8xxm:SS (3.2) BS01 rna ? GO:0002181 ... P62269 38641729
    894868 8xxm:ST (3.2) BS01 rna ? GO:0000028 ... P39019 38641729
    894869 8xxm:SU (3.2) BS01 rna ? GO:0002181 ... P60866 38641729
    894870 8xxm:SW (3.2) BS01 rna ? GO:0002181 ... P62244 38641729
    894871 8xxm:SX (3.2) BS01 rna ? GO:0002181 ... P62266 38641729
    894872 8xxm:SY (3.2) BS01 rna ? GO:0002181 ... P62847 38641729
    894873 8xxm:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 38641729
    894874 8xxm:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 38641729
    894875 8xxm:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 38641729
    894876 8xxm:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 38641729
    894877 8xxm:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 38641729
    894878 8xxm:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 38641729
    894879 8xxm:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 38641729
    894880 8xxm:Se (3.2) BS01 rna ? GO:0003735 ... P62861 38641729
    894881 8xxm:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 38641729
    894882 8xxm:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 38641729
    894883 8xxn:3B (3.6) BS01 rna ? GO:0001732 ... P55884 38641729
    894884 8xxn:3C (3.6) BS01 rna ? GO:0001732 ... Q99613 38641729
    894885 8xxn:3N (3.6) BS01 rna ? GO:0001732 ... O15371 38641729
    894886 8xxn:C1 (3.6) BS01 rna ? GO:0003723 ... P41567 38641729
    894887 8xxn:CD (3.6) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    894888 8xxn:SA (3.6) BS01 rna ? GO:0000028 ... P08865 38641729
    894889 8xxn:SB (3.6) BS01 rna ? GO:0002181 ... P61247 38641729
    894890 8xxn:SC (3.6) BS01 rna ? GO:0002181 ... P15880 38641729
    894891 8xxn:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    894892 8xxn:SE (3.6) BS01 rna ? GO:0002181 ... P62701 38641729
    894893 8xxn:SF (3.6) BS01 rna ? GO:0000028 ... P46782 38641729
    894894 8xxn:SG (3.6) BS01 rna ? GO:0000082 ... P62753 38641729
    894895 8xxn:SH (3.6) BS01 rna ? GO:0001843 ... P62081 38641729
    894896 8xxn:SI (3.6) BS01 rna ? GO:0000462 ... P62241 38641729
    894897 8xxn:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 38641729
    894898 8xxn:SK (3.6) BS01 rna ? GO:0002181 ... P46783 38641729
    894899 8xxn:SL (3.6) BS01 rna ? GO:0002181 ... P62280 38641729
    894900 8xxn:SM (3.6) BS01 rna ? GO:0002181 ... P25398 38641729
    894901 8xxn:SN (3.6) BS01 rna ? GO:0002181 ... P62277 38641729
    894902 8xxn:SO (3.6) BS01 rna ? GO:0000028 ... P62263 38641729
    894903 8xxn:SP (3.6) BS01 rna ? GO:0000028 ... P62841 38641729
    894904 8xxn:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 38641729
    894905 8xxn:SR (3.6) BS01 rna ? GO:0002181 ... P08708 38641729
    894906 8xxn:SS (3.6) BS01 rna ? GO:0002181 ... P62269 38641729
    894907 8xxn:ST (3.6) BS01 rna ? GO:0000028 ... P39019 38641729
    894908 8xxn:SU (3.6) BS01 rna ? GO:0002181 ... P60866 38641729
    894909 8xxn:SW (3.6) BS01 rna ? GO:0002181 ... P62244 38641729
    894910 8xxn:SX (3.6) BS01 rna ? GO:0002181 ... P62266 38641729
    894911 8xxn:SY (3.6) BS01 rna ? GO:0002181 ... P62847 38641729
    894912 8xxn:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 38641729
    894913 8xxn:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 38641729
    894914 8xxn:Sa (3.6) BS02 ZN ? GO:0002181 ... P62854 38641729
    894915 8xxn:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 38641729
    894916 8xxn:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 38641729
    894917 8xxn:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 38641729
    894918 8xxn:Sd (3.6) BS02 ZN ? GO:0002181 ... P62273 38641729
    894919 8xxn:Se (3.6) BS01 rna ? GO:0003735 ... P62861 38641729
    894920 8xxn:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 38641729
    894921 8xxn:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 38641729
    894922 8xxw:A (3.03) BS01 ZN N/A N/A Q9BYF1 38748880
    894923 8xy0:A (1.9) BS01 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    894924 8xy7:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    894925 8xya:A (2.7) BS01 FAR ? GO:0004689 ... P46020 38548794
    894926 8xya:B (2.7) BS01 FAR ? GO:0005515 ... Q93100 38548794
    894927 8xyb:A (3.1) BS01 FAR ? GO:0004689 ... P46020 38548794
    894928 8xyn:A (2.3) BS01 A1LXX N/A N/A N/A 38597773
    894929 8xyn:A (2.3) BS02 A1LXX N/A N/A N/A 38597773
    894930 8xyn:B (2.3) BS01 A1LXX N/A N/A N/A 38597773
    894931 8xyz:A (2.96) BS01 ZN N/A N/A A0A3Q7RAT9 38866203
    894932 8xz3:C (3.6) BS01 rna N/A GO:0002181 ... A0QSD4 39029461
    894933 8xz3:D (3.6) BS01 rna N/A GO:0003735 ... A0QSD1 39029461
    894934 8xz3:E (3.6) BS01 rna N/A GO:0003735 ... A0QSD2 39029461
    894935 8xz3:F (3.6) BS01 rna N/A GO:0000049 ... A0QSG1 39029461
    894936 8xz3:F (3.6) BS02 rna N/A GO:0000049 ... A0QSG1 39029461
    894937 8xz3:G (3.6) BS01 rna N/A GO:0002181 ... A0QSG4 39029461
    894938 8xz3:H (3.6) BS01 rna N/A GO:0005840 ... A0R7F6 39029461
    894939 8xz3:I (3.6) BS01 rna N/A N/A A0QS62 39029461
    894940 8xz3:J (3.6) BS01 rna N/A GO:0003735 ... A0QS45 39029461
    894941 8xz3:K (3.6) BS01 rna N/A GO:0003729 ... A0QSP8 39029461
    894942 8xz3:L (3.6) BS01 rna N/A GO:0003735 ... A0QSF9 39029461
    894943 8xz3:M (3.6) BS01 rna N/A GO:0003735 ... I7G436 39029461
    894944 8xz3:N (3.6) BS01 rna N/A GO:0000049 ... A0QSD8 39029461
    894945 8xz3:O (3.6) BS01 rna N/A N/A A0QSL9 39029461
    894946 8xz3:P (3.6) BS01 rna N/A GO:0005737 ... I7FGD9 39029461
    894947 8xz3:P (3.6) BS02 rna N/A GO:0005737 ... I7FGD9 39029461
    894948 8xz3:Q (3.6) BS01 rna N/A GO:0003735 ... A0QV42 39029461
    894949 8xz3:R (3.6) BS01 rna N/A GO:0000027 ... A0QYU6 39029461
    894950 8xz3:S (3.6) BS01 rna N/A GO:0003735 ... A0R151 39029461
    894951 8xz3:T (3.6) BS01 rna N/A N/A A0QSD6 39029461
    894952 8xz3:U (3.6) BS01 rna N/A GO:0000027 ... A0QSD3 39029461
    894953 8xz3:V (3.6) BS01 rna N/A GO:0005840 ... A0QSG0 39029461
    894954 8xz3:W (3.6) BS01 rna N/A N/A I7GFB2 39029461
    894955 8xz3:X (3.6) BS01 rna N/A GO:0003735 ... A0R150 39029461
    894956 8xz3:Y (3.6) BS01 rna N/A GO:0005840 ... I7FJ52 39029461
    894957 8xz3:Z (3.6) BS01 rna N/A N/A A0QSD9 39029461
    894958 8xz3:a (3.6) BS01 rna N/A GO:0005840 ... A0QSG7 39029461
    894959 8xz3:a (3.6) BS02 rna N/A GO:0005840 ... A0QSG7 39029461
    894960 8xz3:b (3.6) BS01 rna N/A GO:0005840 ... A0R3I9 39029461
    894961 8xz3:c (3.6) BS01 rna N/A N/A A0QS39 39029461
    894962 8xz3:d (3.6) BS01 rna N/A GO:0005840 ... A0R7K0 39029461
    894963 8xz3:e (3.6) BS01 rna N/A GO:0003735 ... A0QYU7 39029461
    894964 8xz3:f (3.6) BS01 rna N/A GO:0005737 ... A0QSL4 39029461
    894965 8xz3:g (3.6) BS01 rna N/A N/A A0R215 39029461
    894966 8xz7:A (1.75) BS01 A1LWW N/A N/A P11362 38870833
    894967 8xz7:B (1.75) BS01 A1LWW N/A N/A P11362 38870833
    894968 8xzb:A (3.12) BS01 ZN N/A N/A A0A3Q7RAT9 38866203
    894969 8xzd:A (3.47) BS01 ZN 3.4.-.-
    3.4.17.23    		 N/A A0A3Q7RAT9 38866203
    894970 8xzf:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    894971 8xzg:R (3.2) BS01 peptide ? GO:0001525 ... P35414 38428423
    894972 8xzh:R (2.6) BS01 peptide ? GO:0001525 ... P35414 38428423
    894973 8xzi:R (2.7) BS01 A1D5N ? GO:0001525 ... P35414 38428423
    894974 8xzj:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    894975 8y0p:A (2.62) BS01 peptide ? GO:0007155 ... P35222 N/A
    894976 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    894977 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    894978 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    894979 8y0s:A () BS01 ZN N/A N/A N/A N/A
    894980 8y0s:A () BS02 ZN N/A N/A N/A N/A
    894981 8y0s:A () BS03 ZN N/A N/A N/A N/A
    894982 8y0s:B () BS01 ZN N/A N/A N/A N/A
    894983 8y0s:B () BS02 ZN N/A N/A N/A N/A
    894984 8y0s:B () BS03 ZN N/A N/A N/A N/A
    894985 8y0s:B () BS04 A1LXO N/A N/A N/A N/A
    894986 8y0s:C () BS01 ZN N/A N/A N/A N/A
    894987 8y0s:C () BS02 ZN N/A N/A N/A N/A
    894988 8y0s:C () BS03 ZN N/A N/A N/A N/A
    894989 8y0s:D () BS01 ZN N/A N/A N/A N/A
    894990 8y0s:D () BS02 ZN N/A N/A N/A N/A
    894991 8y0s:D () BS03 ZN N/A N/A N/A N/A
    894992 8y0u:5 (3.59) BS01 rna ? GO:0002182 ... P23301 38698775
    894993 8y0u:LA (3.59) BS01 rna ? GO:0002181 ... P0CX45 38698775
    894994 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    894995 8y0u:LB (3.59) BS01 rna ? GO:0000027 ... P14126 38698775
    894996 8y0u:LC (3.59) BS01 rna ? GO:0002181 ... P10664 38698775
    894997 8y0u:LC (3.59) BS02 rna ? GO:0002181 ... P10664 38698775
    894998 8y0u:LD (3.59) BS01 rna ? GO:0000027 ... P26321 38698775
    894999 8y0u:LD (3.59) BS02 rna ? GO:0000027 ... P26321 38698775
    895000 8y0u:LE (3.59) BS01 rna ? GO:0000027 ... P05739 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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