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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    893801 8xr6:N (2.53) BS06 CLA N/A N/A N/A N/A
    893802 8xr6:N (2.53) BS07 CLA N/A N/A N/A N/A
    893803 8xr6:Q (2.53) BS01 peptide N/A N/A N/A N/A
    893804 8xr6:V (2.53) BS01 HEM N/A N/A A0A222AI35 N/A
    893805 8xr6:X (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI61 N/A
    893806 8xr6:Y (2.53) BS01 8CT N/A GO:0009523 ... A0A222AI69 N/A
    893807 8xr6:Z (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI96 N/A
    893808 8xr6:a (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI41 N/A
    893809 8xr6:a (2.53) BS02 OEX N/A GO:0005506 ... A0A222AI41 N/A
    893810 8xr6:a (2.53) BS03 FE2 N/A GO:0005506 ... A0A222AI41 N/A
    893811 8xr6:a (2.53) BS04 BCT N/A GO:0005506 ... A0A222AI41 N/A
    893812 8xr6:a (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI41 N/A
    893813 8xr6:a (2.53) BS06 CLA N/A GO:0005506 ... A0A222AI41 N/A
    893814 8xr6:a (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    893815 8xr6:a (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI41 N/A
    893816 8xr6:a (2.53) BS09 8CT N/A GO:0005506 ... A0A222AI41 N/A
    893817 8xr6:a (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI41 N/A
    893818 8xr6:a (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI41 N/A
    893819 8xr6:a (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    893820 8xr6:b (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893821 8xr6:b (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893822 8xr6:b (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893823 8xr6:b (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893824 8xr6:b (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893825 8xr6:b (2.53) BS06 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893826 8xr6:b (2.53) BS07 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893827 8xr6:b (2.53) BS08 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893828 8xr6:b (2.53) BS09 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893829 8xr6:b (2.53) BS10 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893830 8xr6:b (2.53) BS11 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893831 8xr6:b (2.53) BS12 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893832 8xr6:b (2.53) BS13 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893833 8xr6:b (2.53) BS14 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893834 8xr6:b (2.53) BS15 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893835 8xr6:b (2.53) BS16 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    893836 8xr6:b (2.53) BS17 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    893837 8xr6:b (2.53) BS18 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    893838 8xr6:b (2.53) BS19 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    893839 8xr6:c (2.53) BS01 OEX N/A GO:0005737 ... A0A222AI36 N/A
    893840 8xr6:c (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893841 8xr6:c (2.53) BS03 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893842 8xr6:c (2.53) BS04 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893843 8xr6:c (2.53) BS05 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893844 8xr6:c (2.53) BS06 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893845 8xr6:c (2.53) BS07 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893846 8xr6:c (2.53) BS08 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893847 8xr6:c (2.53) BS09 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893848 8xr6:c (2.53) BS10 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893849 8xr6:c (2.53) BS11 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893850 8xr6:c (2.53) BS12 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893851 8xr6:c (2.53) BS13 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893852 8xr6:c (2.53) BS14 CLA N/A GO:0005737 ... A0A222AI36 N/A
    893853 8xr6:c (2.53) BS15 8CT N/A GO:0005737 ... A0A222AI36 N/A
    893854 8xr6:c (2.53) BS16 8CT N/A GO:0005737 ... A0A222AI36 N/A
    893855 8xr6:c (2.53) BS17 8CT N/A GO:0005737 ... A0A222AI36 N/A
    893856 8xr6:d (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI37 N/A
    893857 8xr6:d (2.53) BS02 FE2 N/A GO:0005506 ... A0A222AI37 N/A
    893858 8xr6:d (2.53) BS03 BCT N/A GO:0005506 ... A0A222AI37 N/A
    893859 8xr6:d (2.53) BS04 CLA N/A GO:0005506 ... A0A222AI37 N/A
    893860 8xr6:d (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI37 N/A
    893861 8xr6:d (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    893862 8xr6:d (2.53) BS07 CLA N/A GO:0005506 ... A0A222AI37 N/A
    893863 8xr6:d (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 N/A
    893864 8xr6:d (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    893865 8xr6:d (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 N/A
    893866 8xr6:d (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 N/A
    893867 8xr6:d (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 N/A
    893868 8xr6:e (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI74 N/A
    893869 8xr6:e (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    893870 8xr6:g (2.53) BS01 CLA N/A N/A N/A N/A
    893871 8xr6:g (2.53) BS02 II0 N/A N/A N/A N/A
    893872 8xr6:g (2.53) BS03 CLA N/A N/A N/A N/A
    893873 8xr6:g (2.53) BS04 CLA N/A N/A N/A N/A
    893874 8xr6:g (2.53) BS05 CLA N/A N/A N/A N/A
    893875 8xr6:g (2.53) BS06 CLA N/A N/A N/A N/A
    893876 8xr6:g (2.53) BS07 CLA N/A N/A N/A N/A
    893877 8xr6:g (2.53) BS08 CLA N/A N/A N/A N/A
    893878 8xr6:g (2.53) BS09 CLA N/A N/A N/A N/A
    893879 8xr6:g (2.53) BS10 CLA N/A N/A N/A N/A
    893880 8xr6:g (2.53) BS11 KC2 N/A N/A N/A N/A
    893881 8xr6:g (2.53) BS12 CLA N/A N/A N/A N/A
    893882 8xr6:g (2.53) BS13 CLA N/A N/A N/A N/A
    893883 8xr6:g (2.53) BS14 II0 N/A N/A N/A N/A
    893884 8xr6:g (2.53) BS15 II0 N/A N/A N/A N/A
    893885 8xr6:g (2.53) BS16 II0 N/A N/A N/A N/A
    893886 8xr6:g (2.53) BS17 IHT N/A N/A N/A N/A
    893887 8xr6:g (2.53) BS18 II0 N/A N/A N/A N/A
    893888 8xr6:h (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    893889 8xr6:h (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    893890 8xr6:h (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    893891 8xr6:h (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    893892 8xr6:h (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    893893 8xr6:h (2.53) BS06 8CT N/A GO:0009523 ... A0A222AIE4 N/A
    893894 8xr6:i (2.53) BS01 CLA N/A GO:0005737 ... A0A222AI80 N/A
    893895 8xr6:i (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI80 N/A
    893896 8xr6:j (2.53) BS01 peptide N/A GO:0009523 ... A0A222AI54 N/A
    893897 8xr6:k (2.53) BS01 CLA N/A GO:0005737 ... A0A222AIA0 N/A
    893898 8xr6:k (2.53) BS02 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    893899 8xr6:k (2.53) BS03 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    893900 8xr6:n (2.53) BS01 CLA N/A N/A N/A N/A
    893901 8xr6:n (2.53) BS02 CLA N/A N/A N/A N/A
    893902 8xr6:n (2.53) BS03 CLA N/A N/A N/A N/A
    893903 8xr6:n (2.53) BS04 CLA N/A N/A N/A N/A
    893904 8xr6:n (2.53) BS05 CLA N/A N/A N/A N/A
    893905 8xr6:n (2.53) BS06 CLA N/A N/A N/A N/A
    893906 8xr6:n (2.53) BS07 CLA N/A N/A N/A N/A
    893907 8xr6:p (2.53) BS01 CLA N/A N/A N/A N/A
    893908 8xr6:p (2.53) BS02 II0 N/A N/A N/A N/A
    893909 8xr6:p (2.53) BS03 CLA N/A N/A N/A N/A
    893910 8xr6:p (2.53) BS04 CLA N/A N/A N/A N/A
    893911 8xr6:p (2.53) BS05 CLA N/A N/A N/A N/A
    893912 8xr6:p (2.53) BS06 CLA N/A N/A N/A N/A
    893913 8xr6:p (2.53) BS07 CLA N/A N/A N/A N/A
    893914 8xr6:p (2.53) BS08 CLA N/A N/A N/A N/A
    893915 8xr6:p (2.53) BS09 CLA N/A N/A N/A N/A
    893916 8xr6:p (2.53) BS10 CLA N/A N/A N/A N/A
    893917 8xr6:p (2.53) BS11 CLA N/A N/A N/A N/A
    893918 8xr6:p (2.53) BS12 KC2 N/A N/A N/A N/A
    893919 8xr6:p (2.53) BS13 CLA N/A N/A N/A N/A
    893920 8xr6:p (2.53) BS14 CLA N/A N/A N/A N/A
    893921 8xr6:p (2.53) BS15 II0 N/A N/A N/A N/A
    893922 8xr6:p (2.53) BS16 II0 N/A N/A N/A N/A
    893923 8xr6:p (2.53) BS17 II0 N/A N/A N/A N/A
    893924 8xr6:p (2.53) BS18 II0 N/A N/A N/A N/A
    893925 8xr6:p (2.53) BS19 IHT N/A N/A N/A N/A
    893926 8xr6:p (2.53) BS20 CLA N/A N/A N/A N/A
    893927 8xr6:q (2.53) BS01 peptide N/A N/A N/A N/A
    893928 8xr6:v (2.53) BS01 HEM N/A N/A A0A222AI35 N/A
    893929 8xr6:x (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI61 N/A
    893930 8xr6:y (2.53) BS01 8CT N/A GO:0009523 ... A0A222AI69 N/A
    893931 8xr6:z (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI96 N/A
    893932 8xrf:A (2.94) BS01 dna N/A N/A Q00942 N/A
    893933 8xrf:A (2.94) BS02 dna N/A N/A Q00942 N/A
    893934 8xrf:A (2.94) BS03 dna N/A N/A Q00942 N/A
    893935 8xrf:A (2.94) BS04 MG N/A N/A Q00942 N/A
    893936 8xrf:A (2.94) BS05 MG N/A N/A Q00942 N/A
    893937 8xrf:A (2.94) BS06 MG N/A N/A Q00942 N/A
    893938 8xrf:B (2.94) BS01 dna N/A N/A Q00942 N/A
    893939 8xrf:B (2.94) BS02 dna N/A N/A Q00942 N/A
    893940 8xrf:B (2.94) BS03 dna N/A N/A Q00942 N/A
    893941 8xrf:B (2.94) BS04 MG N/A N/A Q00942 N/A
    893942 8xrf:B (2.94) BS05 MG N/A N/A Q00942 N/A
    893943 8xrf:B (2.94) BS06 MG N/A N/A Q00942 N/A
    893944 8xrg:A (1.61) BS01 ADP N/A N/A Q00942 N/A
    893945 8xrh:A (1.25) BS01 ANP N/A N/A Q00942 N/A
    893946 8xri:A (2.92) BS01 dna N/A N/A Q00942 N/A
    893947 8xri:A (2.92) BS02 dna N/A N/A Q00942 N/A
    893948 8xri:A (2.92) BS03 dna N/A N/A Q00942 N/A
    893949 8xri:A (2.92) BS04 MG N/A N/A Q00942 N/A
    893950 8xri:A (2.92) BS05 MG N/A N/A Q00942 N/A
    893951 8xri:B (2.92) BS01 dna N/A N/A Q00942 N/A
    893952 8xri:B (2.92) BS02 dna N/A N/A Q00942 N/A
    893953 8xri:B (2.92) BS03 dna N/A N/A Q00942 N/A
    893954 8xri:B (2.92) BS04 dna N/A N/A Q00942 N/A
    893955 8xri:B (2.92) BS05 MG N/A N/A Q00942 N/A
    893956 8xri:B (2.92) BS06 MG N/A N/A Q00942 N/A
    893957 8xrt:A (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    893958 8xrt:B (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    893959 8xrt:C (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    893960 8xrt:D (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    893961 8xrt:E (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    893962 8xrt:F (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    893963 8xru:A (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    893964 8xru:B (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    893965 8xrv:A (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893966 8xrv:A (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    893967 8xrv:B (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893968 8xrv:B (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    893969 8xrv:C (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893970 8xrv:C (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    893971 8xrv:D (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893972 8xrv:D (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    893973 8xrv:E (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893974 8xrv:E (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    893975 8xrv:F (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893976 8xrv:F (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    893977 8xrx:A (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893978 8xrx:A (2.5) BS02 BGC N/A GO:0004553 ... N/A 38527679
    893979 8xrx:A (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    893980 8xrx:B (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893981 8xrx:B (2.5) BS02 GLC N/A GO:0004553 ... N/A 38527679
    893982 8xrx:B (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    893983 8xrx:C (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893984 8xrx:C (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    893985 8xrx:D (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893986 8xrx:D (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    893987 8xrx:E (2.5) BS01 CA N/A GO:0004553 ... N/A 38527679
    893988 8xrx:F (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    893989 8xrx:F (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    893990 8xsf:A (2.16) BS01 ZN N/A N/A Q9BYF1 38850530
    893991 8xsj:A (2.61) BS01 ZN N/A N/A Q9BYF1 38850530
    893992 8xsx:CA (2.4) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    893993 8xsx:CB (2.4) BS01 rna N/A GO:0002244 ... P13639 38942792
    893994 8xsx:CB (2.4) BS02 rna N/A GO:0002244 ... P13639 38942792
    893995 8xsx:CB (2.4) BS03 ADP N/A GO:0002244 ... P13639 38942792
    893996 8xsx:CD (2.4) BS01 rna N/A GO:0003723 ... Q8NC51 38942792
    893997 8xsx:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 38942792
    893998 8xsx:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 38942792
    893999 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    894000 8xsx:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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