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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    892001 8xbt:E (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    892002 8xbt:F (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    892003 8xbt:F (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    892004 8xbt:G (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    892005 8xbt:G (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    892006 8xbt:H (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    892007 8xbt:H (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    892008 8xbt:O (4.12) BS01 dna ? GO:0000150 ... Q06609 38509361
    892009 8xbu:A (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    892010 8xbu:A (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    892011 8xbu:B (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    892012 8xbu:B (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    892013 8xbu:C (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    892014 8xbu:C (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    892015 8xbu:D (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    892016 8xbu:D (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    892017 8xbu:E (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    892018 8xbu:E (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    892019 8xbu:F (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    892020 8xbu:F (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    892021 8xbu:G (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    892022 8xbu:G (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    892023 8xbu:H (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    892024 8xbu:H (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    892025 8xbu:L (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    892026 8xbu:M (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    892027 8xbu:R (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    892028 8xbw:E (2.89) BS01 dna ? GO:0000786 ... P68431 38509361
    892029 8xbw:F (2.89) BS01 dna ? GO:0000781 ... P62805 38509361
    892030 8xc1:A (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    892031 8xc1:A (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    892032 8xc1:A (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    892033 8xc1:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    892034 8xc1:A (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    892035 8xc1:A (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    892036 8xc1:B (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    892037 8xc1:B (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    892038 8xc1:B (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    892039 8xc1:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    892040 8xc1:B (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    892041 8xc1:B (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    892042 8xc4:B (3.24) BS01 FUC ? GO:0019031 ... Q4VCP5 38773072
    892043 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    892044 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    892045 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    892046 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    892047 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    892048 8xcm:C (3.08) BS01 HEC ? N/A M1V1V5 N/A
    892049 8xcm:C (3.08) BS02 HEC ? N/A M1V1V5 N/A
    892050 8xcm:C (3.08) BS03 HEC ? N/A M1V1V5 N/A
    892051 8xcm:C (3.08) BS04 U10 ? N/A M1V1V5 N/A
    892052 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    892053 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    892054 8xcn:C (3.02) BS01 HEC ? N/A M1V1V5 N/A
    892055 8xcn:C (3.02) BS02 HEC ? N/A M1V1V5 N/A
    892056 8xcn:C (3.02) BS03 HEC ? N/A M1V1V5 N/A
    892057 8xcn:C (3.02) BS04 U10 ? N/A M1V1V5 N/A
    892058 8xco:A (2.64) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    892059 8xcp:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892060 8xcp:A (2.64) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892061 8xcq:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892062 8xcq:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892063 8xcr:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892064 8xcr:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892065 8xcs:A (2.63) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    892066 8xcs:A (2.63) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    892067 8xct:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    892068 8xcu:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    892069 8xcu:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892070 8xcv:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892071 8xcw:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    892072 8xcw:A (2.87) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    892073 8xcx:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892074 8xcx:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892075 8xcy:A (2.91) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892076 8xcy:A (2.91) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892077 8xcz:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892078 8xcz:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892079 8xd0:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    892080 8xd0:A (2.83) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    892081 8xd1:A (2.96) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892082 8xd2:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892083 8xd3:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892084 8xd3:A (2.87) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892085 8xd4:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892086 8xd5:A (2.75) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    892087 8xd5:A (2.75) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    892088 8xd6:A (2.79) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    892089 8xd6:A (2.79) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    892090 8xd6:A (2.79) BS03 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    892091 8xdo:A (1.37) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892092 8xdo:A (1.37) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892093 8xdo:B (1.37) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892094 8xdo:B (1.37) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892095 8xdp:A (1.75) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892096 8xdp:A (1.75) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892097 8xdp:B (1.75) BS01 H6N N/A N/A A0A6B9TNK2 N/A
    892098 8xdp:B (1.75) BS02 MG N/A N/A A0A6B9TNK2 N/A
    892099 8xdp:B (1.75) BS03 SAH N/A N/A A0A6B9TNK2 N/A
    892100 8xdq:A (1.77) BS01 MG N/A N/A N/A N/A
    892101 8xdq:A (1.77) BS02 SAH N/A N/A N/A N/A
    892102 8xdq:B (1.77) BS01 MG N/A N/A N/A N/A
    892103 8xdq:B (1.77) BS02 SAH N/A N/A N/A N/A
    892104 8xdr:A (1.83) BS01 MG N/A N/A N/A N/A
    892105 8xdr:A (1.83) BS02 SAH N/A N/A N/A N/A
    892106 8xdr:B (1.83) BS01 MG N/A N/A N/A N/A
    892107 8xdr:B (1.83) BS02 SAH N/A N/A N/A N/A
    892108 8xdr:B (1.83) BS03 H6N N/A N/A N/A N/A
    892109 8xds:A (1.97) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892110 8xds:A (1.97) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892111 8xds:B (1.97) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892112 8xds:B (1.97) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892113 8xdt:A (2.65) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892114 8xdt:A (2.65) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892115 8xdt:B (2.65) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892116 8xdt:B (2.65) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892117 8xdu:A (1.92) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892118 8xdu:A (1.92) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892119 8xdu:B (1.92) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892120 8xdu:B (1.92) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892121 8xdv:A (2.32) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892122 8xdv:A (2.32) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892123 8xdv:B (2.32) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892124 8xdv:B (2.32) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892125 8xdy:A (2.2) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892126 8xdy:A (2.2) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892127 8xdy:B (2.2) BS01 H6N N/A N/A A0A6B9TNK2 N/A
    892128 8xdy:B (2.2) BS02 MG N/A N/A A0A6B9TNK2 N/A
    892129 8xdy:B (2.2) BS03 SAH N/A N/A A0A6B9TNK2 N/A
    892130 8xe0:A (2.2) BS01 H6N N/A N/A A0A6B9TNK2 N/A
    892131 8xe0:A (2.2) BS02 MG N/A N/A A0A6B9TNK2 N/A
    892132 8xe0:A (2.2) BS03 SAH N/A N/A A0A6B9TNK2 N/A
    892133 8xe0:B (2.2) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892134 8xe0:B (2.2) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892135 8xe2:A (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892136 8xe2:A (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892137 8xe2:A (2.43) BS03 H6N N/A N/A A0A6B9TNK2 N/A
    892138 8xe2:B (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892139 8xe2:B (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892140 8xe2:B (2.43) BS03 H6N N/A N/A A0A6B9TNK2 N/A
    892141 8xe2:C (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892142 8xe2:C (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892143 8xe2:D (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    892144 8xe2:D (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    892145 8xe3:A (1.72) BS01 MG N/A N/A A0A077EWA5 N/A
    892146 8xe3:A (1.72) BS02 SAH N/A N/A A0A077EWA5 N/A
    892147 8xe3:B (1.72) BS01 MG N/A N/A A0A077EWA5 N/A
    892148 8xe3:B (1.72) BS02 SAH N/A N/A A0A077EWA5 N/A
    892149 8xe4:A (1.96) BS01 MG N/A N/A A0A077EWA5 N/A
    892150 8xe4:A (1.96) BS02 SAH N/A N/A A0A077EWA5 N/A
    892151 8xe4:B (1.96) BS01 MG N/A N/A A0A077EWA5 N/A
    892152 8xe4:B (1.96) BS02 SAH N/A N/A A0A077EWA5 N/A
    892153 8xe4:C (1.96) BS01 A1LU2 N/A N/A A0A077EWA5 N/A
    892154 8xe4:C (1.96) BS02 MG N/A N/A A0A077EWA5 N/A
    892155 8xe4:C (1.96) BS03 SAH N/A N/A A0A077EWA5 N/A
    892156 8xe4:D (1.96) BS01 A1LU2 N/A N/A A0A077EWA5 N/A
    892157 8xe4:D (1.96) BS02 MG N/A N/A A0A077EWA5 N/A
    892158 8xe4:D (1.96) BS03 SAH N/A N/A A0A077EWA5 N/A
    892159 8xe5:A (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    892160 8xe5:A (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    892161 8xe5:A (2.07) BS03 H6N N/A N/A A0A077EWA5 N/A
    892162 8xe5:B (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    892163 8xe5:B (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    892164 8xe5:C (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    892165 8xe5:C (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    892166 8xe5:C (2.07) BS03 H6N N/A N/A A0A077EWA5 N/A
    892167 8xe5:D (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    892168 8xe5:D (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    892169 8xe7:A (1.95) BS01 ZN 2.3.1.-
    2.3.1.286    		 N/A Q8IXJ6 38647411
    892170 8xej:X (3.66) BS01 DLP ? GO:0002513 ... Q9H6D3 38364890
    892171 8xes:A (1.78) BS01 peptide N/A N/A A0A0G2JPD3 38885041
    892172 8xf0:C (2.5) BS01 MG N/A N/A N/A 38238241
    892173 8xf0:E (2.5) BS01 MG N/A N/A N/A 38238241
    892174 8xf0:F (2.5) BS01 MG N/A N/A N/A 38238241
    892175 8xfc:D (3.89) BS01 ATP N/A N/A I6Y482 N/A
    892176 8xfc:D (3.89) BS02 ATP N/A N/A I6Y482 N/A
    892177 8xfd:A (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    892178 8xfd:A (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    892179 8xfd:A (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    892180 8xfd:B (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    892181 8xfd:B (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    892182 8xfd:B (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    892183 8xfd:C (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    892184 8xfd:C (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    892185 8xfd:C (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    892186 8xfd:D (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    892187 8xfd:D (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    892188 8xfd:D (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    892189 8xfm:A (2.6) BS01 A1LU6 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    892190 8xfm:A (2.6) BS02 ZN 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    892191 8xfq:A (2.25) BS01 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892192 8xfq:A (2.25) BS02 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892193 8xfq:A (2.25) BS03 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892194 8xfq:A (2.25) BS04 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892195 8xfq:A (2.25) BS05 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892196 8xfq:A (2.25) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892197 8xfq:A (2.25) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892198 8xfq:A (2.25) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892199 8xfq:A (2.25) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    892200 8xfq:A (2.25) BS10 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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