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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891001 8wux:K (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    891002 8wux:L (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    891003 8wux:M (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    891004 8wux:N (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    891005 8wuy:A (2.6) BS01 XBF ? GO:0003677 ... P22736 38232685
    891006 8wv4:A (3.3) BS01 CA N/A N/A P02741 38935342
    891007 8wv4:A (3.3) BS02 CA N/A N/A P02741 38935342
    891008 8wv4:B (3.3) BS01 CA N/A N/A P02741 38935342
    891009 8wv4:B (3.3) BS02 CA N/A N/A P02741 38935342
    891010 8wv4:C (3.3) BS01 CA N/A N/A P02741 38935342
    891011 8wv4:C (3.3) BS02 CA N/A N/A P02741 38935342
    891012 8wv4:D (3.3) BS01 CA N/A N/A P02741 38935342
    891013 8wv4:D (3.3) BS02 CA N/A N/A P02741 38935342
    891014 8wv4:E (3.3) BS01 CA N/A N/A P02741 38935342
    891015 8wv4:E (3.3) BS02 CA N/A N/A P02741 38935342
    891016 8wv5:A (3.5) BS01 CA N/A N/A P02741 38935342
    891017 8wv5:A (3.5) BS02 CA N/A N/A P02741 38935342
    891018 8wv5:B (3.5) BS01 CA N/A N/A P02741 38935342
    891019 8wv5:B (3.5) BS02 CA N/A N/A P02741 38935342
    891020 8wv5:C (3.5) BS01 CA N/A N/A P02741 38935342
    891021 8wv5:C (3.5) BS02 CA N/A N/A P02741 38935342
    891022 8wv5:D (3.5) BS01 CA N/A N/A P02741 38935342
    891023 8wv5:D (3.5) BS02 CA N/A N/A P02741 38935342
    891024 8wv5:E (3.5) BS01 CA N/A N/A P02741 38935342
    891025 8wv5:E (3.5) BS02 CA N/A N/A P02741 38935342
    891026 8wv5:F (3.5) BS01 CA N/A N/A P02741 38935342
    891027 8wv5:F (3.5) BS02 CA N/A N/A P02741 38935342
    891028 8wv5:G (3.5) BS01 CA N/A N/A P02741 38935342
    891029 8wv5:G (3.5) BS02 CA N/A N/A P02741 38935342
    891030 8wv5:H (3.5) BS01 CA N/A N/A P02741 38935342
    891031 8wv5:H (3.5) BS02 CA N/A N/A P02741 38935342
    891032 8wv5:I (3.5) BS01 CA N/A N/A P02741 38935342
    891033 8wv5:I (3.5) BS02 CA N/A N/A P02741 38935342
    891034 8wv5:J (3.5) BS01 CA N/A N/A P02741 38935342
    891035 8wv5:J (3.5) BS02 CA N/A N/A P02741 38935342
    891036 8wv8:A (2.93) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891037 8wv8:A (2.93) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891038 8wv8:B (2.93) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891039 8wv8:B (2.93) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891040 8wv8:B (2.93) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891041 8wv8:B (2.93) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891042 8wvb:A (2.5) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    891043 8wvb:B (2.5) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    891044 8wvd:A (1.66) BS01 UD1 N/A N/A K7NBW3 38867497
    891045 8wve:A (2.729) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891046 8wve:A (2.729) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891047 8wve:A (2.729) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891048 8wve:B (2.729) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891049 8wve:B (2.729) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891050 8wve:B (2.729) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891051 8wve:B (2.729) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891052 8wve:B (2.729) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    891053 8wvf:A (3.757) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    891054 8wvf:B (3.757) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    891055 8wvg:A (3.18) BS01 XEQ N/A N/A Q05940 N/A
    891056 8ww2:R (2.79) BS01 OLA ? GO:0004930 ... P46089 38287117
    891057 8ww2:R (2.79) BS02 Y01 ? GO:0004930 ... P46089 38287117
    891058 8wwb:A (2.503) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    891059 8wwd:A (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    891060 8wwd:A (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    891061 8wwd:A (2.3) BS03 ZN N/A N/A A8LPS1 38709871
    891062 8wwd:A (2.3) BS04 ZN N/A N/A A8LPS1 38709871
    891063 8wwd:B (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    891064 8wwd:B (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    891065 8wwd:B (2.3) BS03 ZN N/A N/A A8LPS1 38709871
    891066 8wwd:C (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    891067 8wwd:C (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    891068 8wwd:D (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    891069 8wwd:D (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    891070 8wwo:A (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    891071 8wwo:B (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    891072 8wwo:C (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    891073 8wwo:D (2.2) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38411066
    891074 8wwu:A (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891075 8wwu:A (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891076 8wwu:A (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891077 8wwu:A (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891078 8wwu:B (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891079 8wwu:B (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891080 8wwu:B (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891081 8wwu:B (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891082 8wwu:C (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891083 8wwu:C (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891084 8wwu:C (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891085 8wwu:C (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891086 8wwu:D (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891087 8wwu:D (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891088 8wwu:D (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891089 8wwu:D (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891090 8wwu:E (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891091 8wwu:E (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891092 8wwu:E (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891093 8wwu:E (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891094 8wwu:F (2.0) BS01 ANP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891095 8wwu:F (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891096 8wwu:F (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891097 8wwu:F (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891098 8wwv:A (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891099 8wwv:A (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891100 8wwv:A (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891101 8wwv:A (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891102 8wwv:A (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891103 8wwv:B (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891104 8wwv:B (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891105 8wwv:B (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891106 8wwv:B (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891107 8wwv:B (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891108 8wwv:C (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891109 8wwv:C (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891110 8wwv:C (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891111 8wwv:C (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891112 8wwv:C (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891113 8wwv:D (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891114 8wwv:D (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891115 8wwv:D (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891116 8wwv:D (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891117 8wwv:D (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891118 8wwv:E (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891119 8wwv:E (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891120 8wwv:E (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891121 8wwv:E (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891122 8wwv:E (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891123 8wwv:F (2.3) BS01 ADP 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891124 8wwv:F (2.3) BS02 P3S 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891125 8wwv:F (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891126 8wwv:F (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891127 8wwv:F (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    891128 8www:A (2.78) BS01 YG3 N/A N/A A0A124HF73 N/A
    891129 8www:B (2.78) BS01 YG3 N/A N/A A0A124HF73 N/A
    891130 8wwy:C (1.79) BS01 HX2 ? GO:0043123 ... Q793I8 38442163
    891131 8wwy:D (1.79) BS01 HX2 ? GO:0002224 ... Q8JZM6 38442163
    891132 8wwy:D (1.79) BS02 HX2 ? GO:0002224 ... Q8JZM6 38442163
    891133 8wx0:A (3.7) BS01 rna N/A GO:0000175 ... P9WI57 38395123
    891134 8wx0:A (3.7) BS02 rna N/A GO:0000175 ... P9WI57 38395123
    891135 8wx0:B (3.7) BS01 rna N/A GO:0000175 ... P9WI57 38395123
    891136 8wx0:B (3.7) BS02 rna N/A GO:0000175 ... P9WI57 38395123
    891137 8wx0:C (3.7) BS01 rna N/A GO:0000175 ... P9WI57 38395123
    891138 8wx0:C (3.7) BS02 rna N/A GO:0000175 ... P9WI57 38395123
    891139 8wx4:A (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    891140 8wx4:A (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    891141 8wx4:B (3.12) BS01 LYS ? GO:0005290 ... Q8N697 N/A
    891142 8wx4:B (3.12) BS02 LEU ? GO:0005290 ... Q8N697 N/A
    891143 8wx5:A (3.91) BS01 peptide ? GO:0005290 ... Q8N697 N/A
    891144 8wx7:A (2.02) BS01 XD8 N/A N/A Q06124 39110625
    891145 8wx7:B (2.02) BS01 XD8 N/A N/A Q06124 39110625
    891146 8wxe:m (4.0) BS01 peptide ? N/A Q6PJ56 38657677
    891147 8wxe:m (4.0) BS02 CLR ? N/A Q6PJ56 38657677
    891148 8wxe:n (4.0) BS01 peptide ? GO:0002250 ... P0CF51 38657677
    891149 8wxq:A (1.9) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891150 8wxq:B (1.9) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891151 8wxr:A (2.08) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891152 8wxr:B (2.08) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891153 8wxt:A (1.83) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891154 8wxu:B (2.37) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891155 8wxv:A (2.4) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891156 8wxv:C (2.4) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891157 8wxw:A (1.86) BS01 peptide N/A N/A Q76NL8 N/A
    891158 8wxw:A (1.86) BS02 ZN N/A N/A Q76NL8 N/A
    891159 8wxx:A (2.1) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891160 8wxx:B (2.1) BS01 peptide N/A GO:0000122 ... P61964 38876301
    891161 8wxy:A (2.87) BS01 XGN ? N/A O60885 38175809
    891162 8wxy:B (2.87) BS01 XGN ? N/A O60885 38175809
    891163 8wxy:C (2.87) BS01 XGN ? N/A O60885 38175809
    891164 8wxz:A (2.3) BS01 peptide N/A N/A Q76NL8 N/A
    891165 8wxz:A (2.3) BS02 ZN N/A N/A Q76NL8 N/A
    891166 8wy0:b (3.8) BS01 peptide ? GO:0004888 ... P20963 38657677
    891167 8wy0:b (3.8) BS02 CLR ? GO:0004888 ... P20963 38657677
    891168 8wy0:e (3.8) BS01 peptide ? GO:0004888 ... P07766 38657677
    891169 8wy0:g (3.8) BS01 CLR ? GO:0004888 ... P09693 38657677
    891170 8wy0:m (3.8) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    891171 8wy0:n (3.8) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603    		 38657677
    891172 8wy3:A (2.78) BS01 XHE ? N/A O60885 38175809
    891173 8wy3:B (2.78) BS01 XHE ? N/A O60885 38175809
    891174 8wy3:C (2.78) BS01 XHE ? N/A O60885 38175809
    891175 8wy4:A (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891176 8wy4:A (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891177 8wy4:B (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891178 8wy4:B (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891179 8wy4:C (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891180 8wy4:C (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891181 8wy4:D (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891182 8wy4:D (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891183 8wy5:A (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891184 8wy5:A (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891185 8wy5:B (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891186 8wy5:B (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891187 8wy5:C (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891188 8wy5:C (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891189 8wy5:C (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891190 8wy5:D (3.12) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891191 8wy5:D (3.12) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891192 8wy5:D (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891193 8wy7:A (2.83) BS01 XHN ? N/A O60885 38175809
    891194 8wy7:B (2.83) BS01 XHN ? N/A O60885 38175809
    891195 8wy7:C (2.83) BS01 XHN ? N/A O60885 38175809
    891196 8wyb:A (3.37) BS01 NAD ? N/A D4G637 38555355
    891197 8wyb:B (3.37) BS01 NAD ? N/A D4G637 38555355
    891198 8wyb:C (3.37) BS01 NAD ? N/A D4G637 38555355
    891199 8wyb:D (3.37) BS01 NAD ? N/A D4G637 38555355
    891200 8wyc:A (3.0) BS01 NAD ? N/A D4G637 38555355
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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