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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    890401 8wql:D1 (3.5) BS10 CLA N/A N/A N/A N/A
    890402 8wql:D1 (3.5) BS11 CLA N/A N/A N/A N/A
    890403 8wql:D1 (3.5) BS12 CLA N/A N/A N/A N/A
    890404 8wql:DD (3.5) BS01 peptide N/A N/A N/A N/A
    890405 8wql:DD (3.5) BS02 CLA N/A N/A N/A N/A
    890406 8wql:DD (3.5) BS03 BCT N/A N/A N/A N/A
    890407 8wql:DD (3.5) BS04 CLA N/A N/A N/A N/A
    890408 8wql:DD (3.5) BS05 CLA N/A N/A N/A N/A
    890409 8wql:DD (3.5) BS06 CLA N/A N/A N/A N/A
    890410 8wql:DD (3.5) BS07 PHO N/A N/A N/A N/A
    890411 8wql:DD (3.5) BS08 FE2 N/A N/A N/A N/A
    890412 8wql:DD (3.5) BS09 PHO N/A N/A N/A N/A
    890413 8wql:DD (3.5) BS10 CLA N/A N/A N/A N/A
    890414 8wql:DD (3.5) BS11 CLA N/A N/A N/A N/A
    890415 8wql:DD (3.5) BS12 CLA N/A N/A N/A N/A
    890416 8wql:DE (3.5) BS01 peptide N/A N/A N/A N/A
    890417 8wql:DE (3.5) BS02 CLA N/A N/A N/A N/A
    890418 8wql:DE (3.5) BS03 BCT N/A N/A N/A N/A
    890419 8wql:DE (3.5) BS04 CLA N/A N/A N/A N/A
    890420 8wql:DE (3.5) BS05 CLA N/A N/A N/A N/A
    890421 8wql:DE (3.5) BS06 CLA N/A N/A N/A N/A
    890422 8wql:DE (3.5) BS07 PHO N/A N/A N/A N/A
    890423 8wql:DE (3.5) BS08 FE2 N/A N/A N/A N/A
    890424 8wql:DE (3.5) BS09 PHO N/A N/A N/A N/A
    890425 8wql:DE (3.5) BS10 CLA N/A N/A N/A N/A
    890426 8wql:DE (3.5) BS11 CLA N/A N/A N/A N/A
    890427 8wql:DE (3.5) BS12 CLA N/A N/A N/A N/A
    890428 8wql:E1 (3.5) BS01 HEM N/A N/A N/A N/A
    890429 8wql:ED (3.5) BS01 HEM N/A N/A N/A N/A
    890430 8wql:EE (3.5) BS01 HEM N/A N/A N/A N/A
    890431 8wql:F1 (3.5) BS01 HEM N/A N/A N/A N/A
    890432 8wql:FD (3.5) BS01 HEM N/A N/A N/A N/A
    890433 8wql:FE (3.5) BS01 HEM N/A N/A N/A N/A
    890434 8wql:H1 (3.5) BS01 CLA N/A N/A N/A N/A
    890435 8wql:H1 (3.5) BS02 CLA N/A N/A N/A N/A
    890436 8wql:H1 (3.5) BS03 CLA N/A N/A N/A N/A
    890437 8wql:HD (3.5) BS01 CLA N/A N/A N/A N/A
    890438 8wql:HD (3.5) BS02 CLA N/A N/A N/A N/A
    890439 8wql:HD (3.5) BS03 CLA N/A N/A N/A N/A
    890440 8wql:HE (3.5) BS01 CLA N/A N/A N/A N/A
    890441 8wql:HE (3.5) BS02 CLA N/A N/A N/A N/A
    890442 8wql:HE (3.5) BS03 CLA N/A N/A N/A N/A
    890443 8wql:I1 (3.5) BS01 CLA N/A N/A N/A N/A
    890444 8wql:ID (3.5) BS01 CLA N/A N/A N/A N/A
    890445 8wql:IE (3.5) BS01 CLA N/A N/A N/A N/A
    890446 8wql:K1 (3.5) BS01 CLA N/A N/A N/A N/A
    890447 8wql:K1 (3.5) BS02 CLA N/A N/A N/A N/A
    890448 8wql:K1 (3.5) BS03 CA N/A N/A N/A N/A
    890449 8wql:KD (3.5) BS01 CLA N/A N/A N/A N/A
    890450 8wql:KD (3.5) BS02 CLA N/A N/A N/A N/A
    890451 8wql:KD (3.5) BS03 CA N/A N/A N/A N/A
    890452 8wql:KE (3.5) BS01 CLA N/A N/A N/A N/A
    890453 8wql:KE (3.5) BS02 CLA N/A N/A N/A N/A
    890454 8wql:KE (3.5) BS03 CA N/A N/A N/A N/A
    890455 8wql:L1 (3.5) BS01 peptide N/A N/A N/A N/A
    890456 8wql:LD (3.5) BS01 peptide N/A N/A N/A N/A
    890457 8wql:LE (3.5) BS01 peptide N/A N/A N/A N/A
    890458 8wql:M1 (3.5) BS01 peptide N/A N/A N/A N/A
    890459 8wql:MD (3.5) BS01 peptide N/A N/A N/A N/A
    890460 8wql:ME (3.5) BS01 peptide N/A N/A N/A N/A
    890461 8wql:U1 (3.5) BS01 CA N/A N/A N/A N/A
    890462 8wql:UD (3.5) BS01 CA N/A N/A N/A N/A
    890463 8wql:UE (3.5) BS01 CA N/A N/A N/A N/A
    890464 8wql:V1 (3.5) BS01 HEM N/A N/A N/A N/A
    890465 8wql:V1 (3.5) BS02 CA N/A N/A N/A N/A
    890466 8wql:VD (3.5) BS01 HEM N/A N/A N/A N/A
    890467 8wql:VD (3.5) BS02 CA N/A N/A N/A N/A
    890468 8wql:VE (3.5) BS01 HEM N/A N/A N/A N/A
    890469 8wql:VE (3.5) BS02 CA N/A N/A N/A N/A
    890470 8wql:X1 (3.5) BS01 CLA N/A N/A N/A N/A
    890471 8wql:XD (3.5) BS01 CLA N/A N/A N/A N/A
    890472 8wql:XE (3.5) BS01 CLA N/A N/A N/A N/A
    890473 8wql:Z1 (3.5) BS01 CLA N/A N/A N/A N/A
    890474 8wql:ZD (3.5) BS01 CLA N/A N/A N/A N/A
    890475 8wql:ZE (3.5) BS01 CLA N/A N/A N/A N/A
    890476 8wql:a1 (3.5) BS01 OEX N/A N/A N/A N/A
    890477 8wql:a1 (3.5) BS02 CLA N/A N/A N/A N/A
    890478 8wql:a1 (3.5) BS03 CLA N/A N/A N/A N/A
    890479 8wql:a1 (3.5) BS04 CLA N/A N/A N/A N/A
    890480 8wql:a1 (3.5) BS05 BCT N/A N/A N/A N/A
    890481 8wql:a1 (3.5) BS06 PHO N/A N/A N/A N/A
    890482 8wql:a1 (3.5) BS07 CLA N/A N/A N/A N/A
    890483 8wql:a1 (3.5) BS08 PHO N/A N/A N/A N/A
    890484 8wql:a1 (3.5) BS09 CLA N/A N/A N/A N/A
    890485 8wql:aD (3.5) BS01 OEX N/A N/A N/A N/A
    890486 8wql:aD (3.5) BS02 CLA N/A N/A N/A N/A
    890487 8wql:aD (3.5) BS03 CLA N/A N/A N/A N/A
    890488 8wql:aD (3.5) BS04 CLA N/A N/A N/A N/A
    890489 8wql:aD (3.5) BS05 BCT N/A N/A N/A N/A
    890490 8wql:aD (3.5) BS06 PHO N/A N/A N/A N/A
    890491 8wql:aD (3.5) BS07 PHO N/A N/A N/A N/A
    890492 8wql:aD (3.5) BS08 CLA N/A N/A N/A N/A
    890493 8wql:aD (3.5) BS09 CLA N/A N/A N/A N/A
    890494 8wql:aE (3.5) BS01 OEX N/A N/A N/A N/A
    890495 8wql:aE (3.5) BS02 CLA N/A N/A N/A N/A
    890496 8wql:aE (3.5) BS03 CLA N/A N/A N/A N/A
    890497 8wql:aE (3.5) BS04 CLA N/A N/A N/A N/A
    890498 8wql:aE (3.5) BS05 BCT N/A N/A N/A N/A
    890499 8wql:aE (3.5) BS06 PHO N/A N/A N/A N/A
    890500 8wql:aE (3.5) BS07 PHO N/A N/A N/A N/A
    890501 8wql:aE (3.5) BS08 CLA N/A N/A N/A N/A
    890502 8wql:aE (3.5) BS09 CLA N/A N/A N/A N/A
    890503 8wql:b1 (3.5) BS01 CLA N/A N/A N/A N/A
    890504 8wql:b1 (3.5) BS02 CLA N/A N/A N/A N/A
    890505 8wql:b1 (3.5) BS03 CLA N/A N/A N/A N/A
    890506 8wql:b1 (3.5) BS04 CLA N/A N/A N/A N/A
    890507 8wql:b1 (3.5) BS05 CLA N/A N/A N/A N/A
    890508 8wql:b1 (3.5) BS06 CLA N/A N/A N/A N/A
    890509 8wql:b1 (3.5) BS07 CLA N/A N/A N/A N/A
    890510 8wql:b1 (3.5) BS08 CLA N/A N/A N/A N/A
    890511 8wql:b1 (3.5) BS09 CLA N/A N/A N/A N/A
    890512 8wql:b1 (3.5) BS10 CLA N/A N/A N/A N/A
    890513 8wql:b1 (3.5) BS11 CLA N/A N/A N/A N/A
    890514 8wql:b1 (3.5) BS12 CLA N/A N/A N/A N/A
    890515 8wql:b1 (3.5) BS13 CLA N/A N/A N/A N/A
    890516 8wql:b1 (3.5) BS14 CLA N/A N/A N/A N/A
    890517 8wql:b1 (3.5) BS15 CLA N/A N/A N/A N/A
    890518 8wql:b1 (3.5) BS16 CLA N/A N/A N/A N/A
    890519 8wql:bD (3.5) BS01 CLA N/A N/A N/A N/A
    890520 8wql:bD (3.5) BS02 CLA N/A N/A N/A N/A
    890521 8wql:bD (3.5) BS03 CLA N/A N/A N/A N/A
    890522 8wql:bD (3.5) BS04 CLA N/A N/A N/A N/A
    890523 8wql:bD (3.5) BS05 CLA N/A N/A N/A N/A
    890524 8wql:bD (3.5) BS06 CLA N/A N/A N/A N/A
    890525 8wql:bD (3.5) BS07 CLA N/A N/A N/A N/A
    890526 8wql:bD (3.5) BS08 CLA N/A N/A N/A N/A
    890527 8wql:bD (3.5) BS09 CLA N/A N/A N/A N/A
    890528 8wql:bD (3.5) BS10 CLA N/A N/A N/A N/A
    890529 8wql:bD (3.5) BS11 CLA N/A N/A N/A N/A
    890530 8wql:bD (3.5) BS12 CLA N/A N/A N/A N/A
    890531 8wql:bD (3.5) BS13 CLA N/A N/A N/A N/A
    890532 8wql:bD (3.5) BS14 CLA N/A N/A N/A N/A
    890533 8wql:bD (3.5) BS15 CLA N/A N/A N/A N/A
    890534 8wql:bD (3.5) BS16 CLA N/A N/A N/A N/A
    890535 8wql:bE (3.5) BS01 CLA N/A N/A N/A N/A
    890536 8wql:bE (3.5) BS02 CLA N/A N/A N/A N/A
    890537 8wql:bE (3.5) BS03 CLA N/A N/A N/A N/A
    890538 8wql:bE (3.5) BS04 CLA N/A N/A N/A N/A
    890539 8wql:bE (3.5) BS05 CLA N/A N/A N/A N/A
    890540 8wql:bE (3.5) BS06 CLA N/A N/A N/A N/A
    890541 8wql:bE (3.5) BS07 CLA N/A N/A N/A N/A
    890542 8wql:bE (3.5) BS08 CLA N/A N/A N/A N/A
    890543 8wql:bE (3.5) BS09 CLA N/A N/A N/A N/A
    890544 8wql:bE (3.5) BS10 CLA N/A N/A N/A N/A
    890545 8wql:bE (3.5) BS11 CLA N/A N/A N/A N/A
    890546 8wql:bE (3.5) BS12 CLA N/A N/A N/A N/A
    890547 8wql:bE (3.5) BS13 CLA N/A N/A N/A N/A
    890548 8wql:bE (3.5) BS14 CLA N/A N/A N/A N/A
    890549 8wql:bE (3.5) BS15 CLA N/A N/A N/A N/A
    890550 8wql:bE (3.5) BS16 CLA N/A N/A N/A N/A
    890551 8wql:c1 (3.5) BS01 CLA N/A N/A N/A N/A
    890552 8wql:c1 (3.5) BS02 CLA N/A N/A N/A N/A
    890553 8wql:c1 (3.5) BS03 CLA N/A N/A N/A N/A
    890554 8wql:c1 (3.5) BS04 CLA N/A N/A N/A N/A
    890555 8wql:c1 (3.5) BS05 CLA N/A N/A N/A N/A
    890556 8wql:c1 (3.5) BS06 CLA N/A N/A N/A N/A
    890557 8wql:c1 (3.5) BS07 CLA N/A N/A N/A N/A
    890558 8wql:c1 (3.5) BS08 CLA N/A N/A N/A N/A
    890559 8wql:c1 (3.5) BS09 CLA N/A N/A N/A N/A
    890560 8wql:c1 (3.5) BS10 CLA N/A N/A N/A N/A
    890561 8wql:c1 (3.5) BS11 CLA N/A N/A N/A N/A
    890562 8wql:c1 (3.5) BS12 CLA N/A N/A N/A N/A
    890563 8wql:c1 (3.5) BS13 CLA N/A N/A N/A N/A
    890564 8wql:cD (3.5) BS01 CLA N/A N/A N/A N/A
    890565 8wql:cD (3.5) BS02 CLA N/A N/A N/A N/A
    890566 8wql:cD (3.5) BS03 CLA N/A N/A N/A N/A
    890567 8wql:cD (3.5) BS04 CLA N/A N/A N/A N/A
    890568 8wql:cD (3.5) BS05 CLA N/A N/A N/A N/A
    890569 8wql:cD (3.5) BS06 CLA N/A N/A N/A N/A
    890570 8wql:cD (3.5) BS07 CLA N/A N/A N/A N/A
    890571 8wql:cD (3.5) BS08 CLA N/A N/A N/A N/A
    890572 8wql:cD (3.5) BS09 CLA N/A N/A N/A N/A
    890573 8wql:cD (3.5) BS10 CLA N/A N/A N/A N/A
    890574 8wql:cD (3.5) BS11 CLA N/A N/A N/A N/A
    890575 8wql:cD (3.5) BS12 CLA N/A N/A N/A N/A
    890576 8wql:cD (3.5) BS13 CLA N/A N/A N/A N/A
    890577 8wql:cE (3.5) BS01 CLA N/A N/A N/A N/A
    890578 8wql:cE (3.5) BS02 CLA N/A N/A N/A N/A
    890579 8wql:cE (3.5) BS03 CLA N/A N/A N/A N/A
    890580 8wql:cE (3.5) BS04 CLA N/A N/A N/A N/A
    890581 8wql:cE (3.5) BS05 CLA N/A N/A N/A N/A
    890582 8wql:cE (3.5) BS06 CLA N/A N/A N/A N/A
    890583 8wql:cE (3.5) BS07 CLA N/A N/A N/A N/A
    890584 8wql:cE (3.5) BS08 CLA N/A N/A N/A N/A
    890585 8wql:cE (3.5) BS09 CLA N/A N/A N/A N/A
    890586 8wql:cE (3.5) BS10 CLA N/A N/A N/A N/A
    890587 8wql:cE (3.5) BS11 CLA N/A N/A N/A N/A
    890588 8wql:cE (3.5) BS12 CLA N/A N/A N/A N/A
    890589 8wql:cE (3.5) BS13 CLA N/A N/A N/A N/A
    890590 8wql:d1 (3.5) BS01 CLA N/A N/A N/A N/A
    890591 8wql:d1 (3.5) BS02 BCT N/A N/A N/A N/A
    890592 8wql:d1 (3.5) BS03 PHO N/A N/A N/A N/A
    890593 8wql:d1 (3.5) BS04 CLA N/A N/A N/A N/A
    890594 8wql:d1 (3.5) BS05 CLA N/A N/A N/A N/A
    890595 8wql:d1 (3.5) BS06 FE2 N/A N/A N/A N/A
    890596 8wql:d1 (3.5) BS07 PHO N/A N/A N/A N/A
    890597 8wql:d1 (3.5) BS08 CLA N/A N/A N/A N/A
    890598 8wql:d1 (3.5) BS09 CLA N/A N/A N/A N/A
    890599 8wql:d1 (3.5) BS10 CLA N/A N/A N/A N/A
    890600 8wql:d1 (3.5) BS11 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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