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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    890201 8wq4:S24E (4.53) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    890202 8wq4:S27A (4.53) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    890203 8wq4:S27E (4.53) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    890204 8wq4:S3AE (4.53) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    890205 8wq4:SL7A (4.53) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    890206 8wq5:A (1.65) BS01 dna N/A N/A Q8IUH3 39122006
    890207 8wq5:B (1.65) BS01 dna N/A N/A Q8IUH3 39122006
    890208 8wq5:C (1.65) BS01 dna N/A N/A Q8IUH3 39122006
    890209 8wq5:D (1.65) BS01 dna N/A N/A Q8IUH3 39122006
    890210 8wq9:A (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890211 8wq9:A (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890212 8wq9:A (1.97) BS03 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890213 8wq9:A (1.97) BS04 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890214 8wq9:B (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890215 8wq9:B (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890216 8wq9:B (1.97) BS03 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890217 8wq9:B (1.97) BS04 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    890218 8wqa:B (3.39) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890219 8wqa:D (3.39) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890220 8wqa:I (3.39) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890221 8wqa:I (3.39) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890222 8wqa:I (3.39) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890223 8wqa:J (3.39) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890224 8wqa:J (3.39) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890225 8wqb:E (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890226 8wqb:E (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890227 8wqb:E (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890228 8wqb:I (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890229 8wqb:I (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890230 8wqb:I (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890231 8wqb:J (3.37) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890232 8wqc:F (3.54) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890233 8wqc:F (3.54) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890234 8wqc:F (3.54) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890235 8wqc:J (3.54) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890236 8wqc:J (3.54) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890237 8wqc:J (3.54) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890238 8wqd:D (3.55) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890239 8wqe:B (3.38) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890240 8wqe:I (3.38) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890241 8wqe:I (3.38) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890242 8wqe:I (3.38) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890243 8wqe:J (3.38) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890244 8wqe:J (3.38) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890245 8wqe:J (3.38) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890246 8wqf:E (3.27) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890247 8wqf:E (3.27) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890248 8wqf:E (3.27) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890249 8wqf:I (3.27) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890250 8wqf:I (3.27) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890251 8wqf:I (3.27) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890252 8wqf:J (3.27) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890253 8wqg:F (4.09) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890254 8wqg:F (4.09) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890255 8wqg:F (4.09) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890256 8wqg:J (4.09) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890257 8wqg:J (4.09) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890258 8wqg:J (4.09) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890259 8wqh:B (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890260 8wqh:B (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890261 8wqh:B (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890262 8wqh:D (3.44) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890263 8wqh:H (3.44) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890264 8wqh:J (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890265 8wqh:J (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890266 8wqh:J (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    890267 8wqi:D (3.5) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    890268 8wqj:A (2.14) BS01 PLP N/A N/A A0A0P1EM06 N/A
    890269 8wqj:A (2.14) BS02 PLP N/A N/A A0A0P1EM06 N/A
    890270 8wqj:B (2.14) BS01 PLP N/A N/A A0A0P1EM06 N/A
    890271 8wqj:B (2.14) BS02 PLP N/A N/A A0A0P1EM06 N/A
    890272 8wql:A1 (3.5) BS01 peptide N/A N/A N/A N/A
    890273 8wql:A1 (3.5) BS02 OEX N/A N/A N/A N/A
    890274 8wql:A1 (3.5) BS03 CLA N/A N/A N/A N/A
    890275 8wql:A1 (3.5) BS04 CLA N/A N/A N/A N/A
    890276 8wql:A1 (3.5) BS05 BCT N/A N/A N/A N/A
    890277 8wql:A1 (3.5) BS06 PHO N/A N/A N/A N/A
    890278 8wql:A1 (3.5) BS07 CLA N/A N/A N/A N/A
    890279 8wql:A1 (3.5) BS08 CLA N/A N/A N/A N/A
    890280 8wql:A1 (3.5) BS09 PHO N/A N/A N/A N/A
    890281 8wql:A1 (3.5) BS10 CLA N/A N/A N/A N/A
    890282 8wql:A1 (3.5) BS11 CLA N/A N/A N/A N/A
    890283 8wql:AD (3.5) BS01 peptide N/A N/A N/A N/A
    890284 8wql:AD (3.5) BS02 OEX N/A N/A N/A N/A
    890285 8wql:AD (3.5) BS03 CLA N/A N/A N/A N/A
    890286 8wql:AD (3.5) BS04 CLA N/A N/A N/A N/A
    890287 8wql:AD (3.5) BS05 BCT N/A N/A N/A N/A
    890288 8wql:AD (3.5) BS06 CLA N/A N/A N/A N/A
    890289 8wql:AD (3.5) BS07 CLA N/A N/A N/A N/A
    890290 8wql:AD (3.5) BS08 PHO N/A N/A N/A N/A
    890291 8wql:AD (3.5) BS09 PHO N/A N/A N/A N/A
    890292 8wql:AD (3.5) BS10 CLA N/A N/A N/A N/A
    890293 8wql:AD (3.5) BS11 CLA N/A N/A N/A N/A
    890294 8wql:AE (3.5) BS01 peptide N/A N/A N/A N/A
    890295 8wql:AE (3.5) BS02 OEX N/A N/A N/A N/A
    890296 8wql:AE (3.5) BS03 CLA N/A N/A N/A N/A
    890297 8wql:AE (3.5) BS04 CLA N/A N/A N/A N/A
    890298 8wql:AE (3.5) BS05 BCT N/A N/A N/A N/A
    890299 8wql:AE (3.5) BS06 CLA N/A N/A N/A N/A
    890300 8wql:AE (3.5) BS07 CLA N/A N/A N/A N/A
    890301 8wql:AE (3.5) BS08 PHO N/A N/A N/A N/A
    890302 8wql:AE (3.5) BS09 PHO N/A N/A N/A N/A
    890303 8wql:AE (3.5) BS10 CLA N/A N/A N/A N/A
    890304 8wql:AE (3.5) BS11 CLA N/A N/A N/A N/A
    890305 8wql:B1 (3.5) BS01 CLA N/A N/A N/A N/A
    890306 8wql:B1 (3.5) BS02 CLA N/A N/A N/A N/A
    890307 8wql:B1 (3.5) BS03 CLA N/A N/A N/A N/A
    890308 8wql:B1 (3.5) BS04 CLA N/A N/A N/A N/A
    890309 8wql:B1 (3.5) BS05 CLA N/A N/A N/A N/A
    890310 8wql:B1 (3.5) BS06 CLA N/A N/A N/A N/A
    890311 8wql:B1 (3.5) BS07 CLA N/A N/A N/A N/A
    890312 8wql:B1 (3.5) BS08 CLA N/A N/A N/A N/A
    890313 8wql:B1 (3.5) BS09 CLA N/A N/A N/A N/A
    890314 8wql:B1 (3.5) BS10 CLA N/A N/A N/A N/A
    890315 8wql:B1 (3.5) BS11 CLA N/A N/A N/A N/A
    890316 8wql:B1 (3.5) BS12 CLA N/A N/A N/A N/A
    890317 8wql:B1 (3.5) BS13 CLA N/A N/A N/A N/A
    890318 8wql:B1 (3.5) BS14 CLA N/A N/A N/A N/A
    890319 8wql:B1 (3.5) BS15 CLA N/A N/A N/A N/A
    890320 8wql:B1 (3.5) BS16 CLA N/A N/A N/A N/A
    890321 8wql:BD (3.5) BS01 CLA N/A N/A N/A N/A
    890322 8wql:BD (3.5) BS02 CLA N/A N/A N/A N/A
    890323 8wql:BD (3.5) BS03 CLA N/A N/A N/A N/A
    890324 8wql:BD (3.5) BS04 CLA N/A N/A N/A N/A
    890325 8wql:BD (3.5) BS05 CLA N/A N/A N/A N/A
    890326 8wql:BD (3.5) BS06 CLA N/A N/A N/A N/A
    890327 8wql:BD (3.5) BS07 CLA N/A N/A N/A N/A
    890328 8wql:BD (3.5) BS08 CLA N/A N/A N/A N/A
    890329 8wql:BD (3.5) BS09 CLA N/A N/A N/A N/A
    890330 8wql:BD (3.5) BS10 CLA N/A N/A N/A N/A
    890331 8wql:BD (3.5) BS11 CLA N/A N/A N/A N/A
    890332 8wql:BD (3.5) BS12 CLA N/A N/A N/A N/A
    890333 8wql:BD (3.5) BS13 CLA N/A N/A N/A N/A
    890334 8wql:BD (3.5) BS14 CLA N/A N/A N/A N/A
    890335 8wql:BD (3.5) BS15 CLA N/A N/A N/A N/A
    890336 8wql:BD (3.5) BS16 CLA N/A N/A N/A N/A
    890337 8wql:BE (3.5) BS01 CLA N/A N/A N/A N/A
    890338 8wql:BE (3.5) BS02 CLA N/A N/A N/A N/A
    890339 8wql:BE (3.5) BS03 CLA N/A N/A N/A N/A
    890340 8wql:BE (3.5) BS04 CLA N/A N/A N/A N/A
    890341 8wql:BE (3.5) BS05 CLA N/A N/A N/A N/A
    890342 8wql:BE (3.5) BS06 CLA N/A N/A N/A N/A
    890343 8wql:BE (3.5) BS07 CLA N/A N/A N/A N/A
    890344 8wql:BE (3.5) BS08 CLA N/A N/A N/A N/A
    890345 8wql:BE (3.5) BS09 CLA N/A N/A N/A N/A
    890346 8wql:BE (3.5) BS10 CLA N/A N/A N/A N/A
    890347 8wql:BE (3.5) BS11 CLA N/A N/A N/A N/A
    890348 8wql:BE (3.5) BS12 CLA N/A N/A N/A N/A
    890349 8wql:BE (3.5) BS13 CLA N/A N/A N/A N/A
    890350 8wql:BE (3.5) BS14 CLA N/A N/A N/A N/A
    890351 8wql:BE (3.5) BS15 CLA N/A N/A N/A N/A
    890352 8wql:BE (3.5) BS16 CLA N/A N/A N/A N/A
    890353 8wql:C1 (3.5) BS01 CLA N/A N/A N/A N/A
    890354 8wql:C1 (3.5) BS02 CLA N/A N/A N/A N/A
    890355 8wql:C1 (3.5) BS03 CLA N/A N/A N/A N/A
    890356 8wql:C1 (3.5) BS04 CLA N/A N/A N/A N/A
    890357 8wql:C1 (3.5) BS05 CLA N/A N/A N/A N/A
    890358 8wql:C1 (3.5) BS06 CLA N/A N/A N/A N/A
    890359 8wql:C1 (3.5) BS07 CLA N/A N/A N/A N/A
    890360 8wql:C1 (3.5) BS08 CLA N/A N/A N/A N/A
    890361 8wql:C1 (3.5) BS09 CLA N/A N/A N/A N/A
    890362 8wql:C1 (3.5) BS10 CLA N/A N/A N/A N/A
    890363 8wql:C1 (3.5) BS11 CLA N/A N/A N/A N/A
    890364 8wql:C1 (3.5) BS12 CLA N/A N/A N/A N/A
    890365 8wql:C1 (3.5) BS13 CLA N/A N/A N/A N/A
    890366 8wql:CD (3.5) BS01 CLA N/A N/A N/A N/A
    890367 8wql:CD (3.5) BS02 CLA N/A N/A N/A N/A
    890368 8wql:CD (3.5) BS03 CLA N/A N/A N/A N/A
    890369 8wql:CD (3.5) BS04 CLA N/A N/A N/A N/A
    890370 8wql:CD (3.5) BS05 CLA N/A N/A N/A N/A
    890371 8wql:CD (3.5) BS06 CLA N/A N/A N/A N/A
    890372 8wql:CD (3.5) BS07 CLA N/A N/A N/A N/A
    890373 8wql:CD (3.5) BS08 CLA N/A N/A N/A N/A
    890374 8wql:CD (3.5) BS09 CLA N/A N/A N/A N/A
    890375 8wql:CD (3.5) BS10 CLA N/A N/A N/A N/A
    890376 8wql:CD (3.5) BS11 CLA N/A N/A N/A N/A
    890377 8wql:CD (3.5) BS12 CLA N/A N/A N/A N/A
    890378 8wql:CD (3.5) BS13 CLA N/A N/A N/A N/A
    890379 8wql:CE (3.5) BS01 CLA N/A N/A N/A N/A
    890380 8wql:CE (3.5) BS02 CLA N/A N/A N/A N/A
    890381 8wql:CE (3.5) BS03 CLA N/A N/A N/A N/A
    890382 8wql:CE (3.5) BS04 CLA N/A N/A N/A N/A
    890383 8wql:CE (3.5) BS05 CLA N/A N/A N/A N/A
    890384 8wql:CE (3.5) BS06 CLA N/A N/A N/A N/A
    890385 8wql:CE (3.5) BS07 CLA N/A N/A N/A N/A
    890386 8wql:CE (3.5) BS08 CLA N/A N/A N/A N/A
    890387 8wql:CE (3.5) BS09 CLA N/A N/A N/A N/A
    890388 8wql:CE (3.5) BS10 CLA N/A N/A N/A N/A
    890389 8wql:CE (3.5) BS11 CLA N/A N/A N/A N/A
    890390 8wql:CE (3.5) BS12 CLA N/A N/A N/A N/A
    890391 8wql:CE (3.5) BS13 CLA N/A N/A N/A N/A
    890392 8wql:D1 (3.5) BS01 peptide N/A N/A N/A N/A
    890393 8wql:D1 (3.5) BS02 CLA N/A N/A N/A N/A
    890394 8wql:D1 (3.5) BS03 BCT N/A N/A N/A N/A
    890395 8wql:D1 (3.5) BS04 PHO N/A N/A N/A N/A
    890396 8wql:D1 (3.5) BS05 CLA N/A N/A N/A N/A
    890397 8wql:D1 (3.5) BS06 CLA N/A N/A N/A N/A
    890398 8wql:D1 (3.5) BS07 CLA N/A N/A N/A N/A
    890399 8wql:D1 (3.5) BS08 FE2 N/A N/A N/A N/A
    890400 8wql:D1 (3.5) BS09 PHO N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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