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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    890001 8woe:Bc (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890002 8woe:Bj (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890003 8woe:Bq (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890004 8woe:Bx (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890005 8woe:C6 (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890006 8woe:CB (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890007 8woe:CI (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890008 8woe:CP (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890009 8woe:CW (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890010 8woe:Cd (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890011 8woe:Ck (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890012 8woe:Cr (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890013 8woe:Cy (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890014 8woe:D3 (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890015 8woe:D9 (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890016 8woe:DA (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890017 8woe:DG (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890018 8woe:DY (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890019 8woe:De (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890020 8woe:Dk (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890021 8woe:Dq (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890022 8woe:Dw (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890023 8woe:E1 (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890024 8woe:E2 (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890025 8woe:E3 (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890026 8woe:E4 (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890027 8woe:EC (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890028 8woe:EJ (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890029 8woe:EQ (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890030 8woe:EX (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890031 8woe:Ex (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890032 8woe:Ey (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890033 8woe:Ez (4.3) BS01 peptide N/A N/A P0A1J9 N/A
    890034 8wom:A (3.5) BS01 BLD ? GO:0005515 ... Q9LJX0 38513023
    890035 8woo:A (3.9) BS01 ANP ? GO:0005515 ... Q9LJX0 38513023
    890036 8woo:A (3.9) BS02 ANP ? GO:0005515 ... Q9LJX0 38513023
    890037 8woo:A (3.9) BS03 BLD ? GO:0005515 ... Q9LJX0 38513023
    890038 8wop:A (2.35) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890039 8wop:A (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890040 8wop:B (2.35) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890041 8wop:B (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890042 8woq:A (2.85) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    890043 8woq:A (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    890044 8woq:A (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    890045 8woq:A (2.85) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    890046 8woq:A (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    890047 8woq:A (2.85) BS06 SPL ? GO:0016020 ... Q9NXL6 38378654
    890048 8woq:B (2.85) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    890049 8woq:B (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    890050 8woq:B (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    890051 8woq:B (2.85) BS04 SPL ? GO:0016020 ... Q9NXL6 38378654
    890052 8woq:B (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    890053 8woq:B (2.85) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    890054 8woq:B (2.85) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    890055 8woq:B (2.85) BS08 CLR ? GO:0016020 ... Q9NXL6 38378654
    890056 8wor:A (2.66) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    890057 8wor:A (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    890058 8wor:A (2.66) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    890059 8wor:A (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    890060 8wor:A (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    890061 8wor:A (2.66) BS06 SPL ? GO:0016020 ... Q9NXL6 38378654
    890062 8wor:A (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    890063 8wor:B (2.66) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    890064 8wor:B (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    890065 8wor:B (2.66) BS03 SPL ? GO:0016020 ... Q9NXL6 38378654
    890066 8wor:B (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    890067 8wor:B (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    890068 8wor:B (2.66) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    890069 8wor:B (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    890070 8wos:A (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    890071 8wos:A (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    890072 8wos:A (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    890073 8wos:A (3.37) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    890074 8wos:B (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    890075 8wos:B (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    890076 8wos:B (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    890077 8wos:B (3.37) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    890078 8wot:A (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    890079 8wot:A (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    890080 8wot:A (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    890081 8wot:A (3.18) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    890082 8wot:B (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    890083 8wot:B (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    890084 8wot:B (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    890085 8wot:B (3.18) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    890086 8wov:A (2.25) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890087 8wov:A (2.25) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890088 8wov:B (2.25) BS01 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890089 8wov:B (2.25) BS02 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890090 8wow:A (2.6) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890091 8wow:A (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890092 8wow:B (2.6) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890093 8wow:B (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    890094 8wox:A (2.75) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... G1TEF4 38112468
    890095 8woy:A (3.14) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... G1TEF4 38112468
    890096 8woz:A (3.25) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... G1TEF4 38112468
    890097 8wp0:A (3.4) BS01 ATP ? GO:0005515 ... Q9LJX0 38513023
    890098 8wp0:A (3.4) BS02 ATP ? GO:0005515 ... Q9LJX0 38513023
    890099 8wp1:A (3.15) BS01 U9S N/A N/A Q9BXA5 38923454
    890100 8wp5:A (2.57006) BS01 UDP N/A N/A N/A 38816433
    890101 8wp8:A (2.89) BS01 ZN N/A N/A Q9BYF1 N/A
    890102 8wpe:A (2.7) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890103 8wpe:A (2.7) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890104 8wpe:A (2.7) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890105 8wpe:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890106 8wpe:C (2.7) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    890107 8wpe:E (2.7) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    890108 8wpf:A (3.0) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890109 8wpf:A (3.0) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890110 8wpf:A (3.0) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890111 8wpf:A (3.0) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890112 8wpf:B (3.0) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    890113 8wpf:C (3.0) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    890114 8wpf:E (3.0) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    890115 8wpg:A (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    890116 8wpg:A (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    890117 8wpg:A (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    890118 8wpg:B (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    890119 8wpg:B (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    890120 8wpg:B (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    890121 8wpk:A (2.7) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890122 8wpk:A (2.7) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890123 8wpk:A (2.7) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890124 8wpk:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890125 8wpk:B (2.7) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    890126 8wpk:C (2.7) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    890127 8wpk:E (2.7) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    890128 8wpp:A (3.1) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890129 8wpp:A (3.1) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    890130 8wpp:B (3.1) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    890131 8wpp:C (3.1) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    890132 8wpp:E (3.1) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    890133 8wpp:E (3.1) BS02 dna ? GO:0019031 ... A0A7H0DN82 37995690
    890134 8wpu:A (3.1) BS01 TRP ? GO:0004930 ... P41180 37919470
    890135 8wpu:A (3.1) BS02 CA ? GO:0004930 ... P41180 37919470
    890136 8wpu:A (3.1) BS03 YP4 ? GO:0004930 ... P41180 37919470
    890137 8wpu:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 37919470
    890138 8wpu:B (3.1) BS02 TRP ? GO:0004930 ... P41180 37919470
    890139 8wpu:B (3.1) BS03 CA ? GO:0004930 ... P41180 37919470
    890140 8wpu:B (3.1) BS04 CLR ? GO:0004930 ... P41180 37919470
    890141 8wpv:A (2.059) BS01 FE N/A N/A A0A084EX36 38641862
    890142 8wpv:A (2.059) BS02 FE N/A N/A A0A084EX36 38641862
    890143 8wpv:A (2.059) BS03 FE N/A N/A A0A084EX36 38641862
    890144 8wpv:A (2.059) BS04 FE N/A N/A A0A084EX36 38641862
    890145 8wq2:AS2P (4.1) BS01 rna ? GO:0003735 ... P39478 38599770
    890146 8wq2:AS2P (4.1) BS02 UNK ? GO:0003735 ... P39478 38599770
    890147 8wq2:AS2P (4.1) BS03 UNK ? GO:0003735 ... P39478 38599770
    890148 8wq2:AS2P (4.1) BS04 UNK ? GO:0003735 ... P39478 38599770
    890149 8wq2:AS3P (4.1) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    890150 8wq2:AS4E (4.1) BS01 rna ? GO:0003723 ... O05634 38599770
    890151 8wq2:AS4P (4.1) BS01 rna ? GO:0003723 ... P39467 38599770
    890152 8wq2:AS5P (4.1) BS01 rna ? GO:0003723 ... O05641 38599770
    890153 8wq2:AS5P (4.1) BS02 UNK ? GO:0003723 ... O05641 38599770
    890154 8wq2:AS5P (4.1) BS03 UNK ? GO:0003723 ... O05641 38599770
    890155 8wq2:AS6E (4.1) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    890156 8wq2:AS7P (4.1) BS01 rna ? GO:0000028 ... P17198 38599770
    890157 8wq2:AS8E (4.1) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    890158 8wq2:AS8P (4.1) BS01 rna ? GO:0003735 ... O05636 38599770
    890159 8wq2:AS9P (4.1) BS01 rna ? GO:0000462 ... P39468 38599770
    890160 8wq2:S10P (4.1) BS01 rna ? GO:0000049 ... P17199 38599770
    890161 8wq2:S11P (4.1) BS01 rna ? GO:0003735 ... P39469 38599770
    890162 8wq2:S12P (4.1) BS01 rna ? GO:0003735 ... P11524 38599770
    890163 8wq2:S12P (4.1) BS02 rna ? GO:0003735 ... P11524 38599770
    890164 8wq2:S13P (4.1) BS01 rna ? GO:0003676 ... P39470 38599770
    890165 8wq2:S14P (4.1) BS01 rna ? GO:0003723 ... O05635 38599770
    890166 8wq2:S15P (4.1) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    890167 8wq2:S17E (4.1) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    890168 8wq2:S17P (4.1) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    890169 8wq2:S19E (4.1) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    890170 8wq2:S19P (4.1) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    890171 8wq2:S24E (4.1) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    890172 8wq2:S27A (4.1) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    890173 8wq2:S27E (4.1) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    890174 8wq2:S28E (4.1) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    890175 8wq2:S3AE (4.1) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    890176 8wq2:SL7A (4.1) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    890177 8wq4:AS2P (4.53) BS01 rna ? GO:0003735 ... P39478 38599770
    890178 8wq4:AS3P (4.53) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    890179 8wq4:AS4E (4.53) BS01 rna ? GO:0003723 ... O05634 38599770
    890180 8wq4:AS4P (4.53) BS01 rna ? GO:0003723 ... P39467 38599770
    890181 8wq4:AS5P (4.53) BS01 rna ? GO:0003723 ... O05641 38599770
    890182 8wq4:AS5P (4.53) BS02 UNK ? GO:0003723 ... O05641 38599770
    890183 8wq4:AS5P (4.53) BS03 UNK ? GO:0003723 ... O05641 38599770
    890184 8wq4:AS6E (4.53) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    890185 8wq4:AS7P (4.53) BS01 rna ? GO:0000028 ... P17198 38599770
    890186 8wq4:AS8E (4.53) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    890187 8wq4:AS8P (4.53) BS01 rna ? GO:0003735 ... O05636 38599770
    890188 8wq4:AS8P (4.53) BS02 UNK ? GO:0003735 ... O05636 38599770
    890189 8wq4:AS9P (4.53) BS01 rna ? GO:0000462 ... P39468 38599770
    890190 8wq4:S10P (4.53) BS01 rna ? GO:0000049 ... P17199 38599770
    890191 8wq4:S11P (4.53) BS01 rna ? GO:0003735 ... P39469 38599770
    890192 8wq4:S12P (4.53) BS01 rna ? GO:0003735 ... P11524 38599770
    890193 8wq4:S12P (4.53) BS02 rna ? GO:0003735 ... P11524 38599770
    890194 8wq4:S13P (4.53) BS01 rna ? GO:0003676 ... P39470 38599770
    890195 8wq4:S14P (4.53) BS01 rna ? GO:0003723 ... O05635 38599770
    890196 8wq4:S15P (4.53) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    890197 8wq4:S17E (4.53) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    890198 8wq4:S17P (4.53) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    890199 8wq4:S19E (4.53) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    890200 8wq4:S19P (4.53) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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