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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887601 8wi9:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    887602 8wi9:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    887603 8wi9:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    887604 8wi9:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    887605 8wi9:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    887606 8wi9:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    887607 8wi9:v (3.5) BS01 rna ? N/A A0QR10 38245551
    887608 8wi9:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    887609 8wia:A (1.96) BS01 ZN N/A N/A N/A 39014102
    887610 8wia:B (1.96) BS01 ZN N/A N/A N/A 39014102
    887611 8wib:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    887612 8wib:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    887613 8wib:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    887614 8wib:4 (3.5) BS01 rna ? GO:0003735 ... A0R215 38245551
    887615 8wib:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    887616 8wib:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    887617 8wib:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    887618 8wib:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    887619 8wib:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    887620 8wib:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    887621 8wib:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    887622 8wib:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    887623 8wib:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    887624 8wib:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    887625 8wib:J (3.5) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    887626 8wib:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    887627 8wib:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    887628 8wib:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    887629 8wib:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    887630 8wib:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    887631 8wib:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    887632 8wib:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    887633 8wib:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    887634 8wib:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    887635 8wib:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    887636 8wib:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    887637 8wib:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    887638 8wib:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    887639 8wib:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    887640 8wib:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    887641 8wib:Z (3.5) BS02 rna ? GO:0003735 ... A0R150 38245551
    887642 8wib:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    887643 8wib:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    887644 8wib:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    887645 8wib:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    887646 8wib:g (3.5) BS02 rna ? GO:0003735 ... N/A 38245551
    887647 8wib:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    887648 8wib:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    887649 8wib:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    887650 8wib:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    887651 8wib:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    887652 8wib:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    887653 8wib:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    887654 8wib:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    887655 8wib:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    887656 8wib:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    887657 8wib:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    887658 8wib:p (3.5) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    887659 8wib:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    887660 8wib:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    887661 8wib:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    887662 8wib:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    887663 8wib:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    887664 8wib:v (3.5) BS01 rna ? N/A A0QR10 38245551
    887665 8wib:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    887666 8wic:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    887667 8wic:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    887668 8wic:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    887669 8wic:3 (3.5) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    887670 8wic:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    887671 8wic:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    887672 8wic:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    887673 8wic:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    887674 8wic:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    887675 8wic:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    887676 8wic:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    887677 8wic:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    887678 8wic:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    887679 8wic:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    887680 8wic:J (3.5) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    887681 8wic:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    887682 8wic:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    887683 8wic:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    887684 8wic:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    887685 8wic:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    887686 8wic:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    887687 8wic:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    887688 8wic:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    887689 8wic:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    887690 8wic:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    887691 8wic:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    887692 8wic:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    887693 8wic:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    887694 8wic:Z (3.5) BS02 rna ? GO:0003735 ... A0R150 38245551
    887695 8wid:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    887696 8wid:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    887697 8wid:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    887698 8wid:g (3.5) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    887699 8wid:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    887700 8wid:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    887701 8wid:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    887702 8wid:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    887703 8wid:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    887704 8wid:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    887705 8wid:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    887706 8wid:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    887707 8wid:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    887708 8wid:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    887709 8wid:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    887710 8wid:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    887711 8wid:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    887712 8wid:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    887713 8wid:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    887714 8wid:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    887715 8wid:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    887716 8wid:v (3.5) BS01 rna ? N/A A0QR10 38245551
    887717 8wid:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    887718 8wid:w (3.5) BS02 rna ? GO:0006417 ... A0QZ86 38245551
    887719 8wie:D (2.3) BS01 FE N/A N/A P02794 N/A
    887720 8wif:c (2.9) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    887721 8wif:d (2.9) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    887722 8wif:e (2.9) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    887723 8wif:f (2.9) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    887724 8wif:g (2.9) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    887725 8wif:h (2.9) BS01 rna ? GO:0000028 ... A0QS97 38245551
    887726 8wif:i (2.9) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    887727 8wif:j (2.9) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    887728 8wif:k (2.9) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    887729 8wif:l (2.9) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    887730 8wif:m (2.9) BS01 rna ? GO:0000049 ... A0QS96 38245551
    887731 8wif:n (2.9) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    887732 8wif:o (2.9) BS01 rna ? GO:0003735 ... A0R550 38245551
    887733 8wif:p (2.9) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    887734 8wif:q (2.9) BS01 rna ? GO:0003735 ... A0QV37 38245551
    887735 8wif:r (2.9) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    887736 8wif:s (2.9) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    887737 8wif:t (2.9) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    887738 8wif:t (2.9) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    887739 8wif:u (2.9) BS01 rna ? GO:0003723 ... A0R102 38245551
    887740 8wif:v (2.9) BS01 rna ? N/A A0QR10 38245551
    887741 8wif:w (2.9) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    887742 8wig:A (3.22) BS01 ZN N/A N/A N/A 39014102
    887743 8wig:B (3.22) BS01 ZN N/A N/A N/A 39014102
    887744 8wih:A (2.44) BS01 ATP N/A N/A N/A 39014102
    887745 8wih:A (2.44) BS02 ZN N/A N/A N/A 39014102
    887746 8wih:B (2.44) BS01 ATP N/A N/A N/A 39014102
    887747 8wih:B (2.44) BS02 ZN N/A N/A N/A 39014102
    887748 8wii:A (2.98) BS01 WE3 N/A N/A N/A 39014102
    887749 8wii:A (2.98) BS02 ZN N/A N/A N/A 39014102
    887750 8wii:B (2.98) BS01 WE3 N/A N/A N/A 39014102
    887751 8wii:B (2.98) BS02 ZN N/A N/A N/A 39014102
    887752 8wij:A (3.08) BS01 X5V N/A N/A N/A 39014102
    887753 8wij:A (3.08) BS02 ZN N/A N/A N/A 39014102
    887754 8wij:B (3.08) BS01 X5V N/A N/A N/A 39014102
    887755 8wij:B (3.08) BS02 ZN N/A N/A N/A 39014102
    887756 8wik:A (2.0) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    887757 8wik:A (2.0) BS02 NAD 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    887758 8wil:A (2.1) BS01 MG 3.6.4.13 GO:0001172 ... A0A7D0QVD8 38296832
    887759 8wim:A (1.84) BS01 MG 3.6.4.13 GO:0003968 ... A0A7D0QVD8 38296832
    887760 8wiu:A (1.4) BS01 WPR ? N/A O60885 38142510
    887761 8wiv:D (3.41) BS01 MG N/A N/A N/A N/A
    887762 8wiv:D (3.41) BS02 AGS N/A N/A N/A N/A
    887763 8wiv:L (3.41) BS01 AGS N/A N/A N/A N/A
    887764 8wiv:M (3.41) BS01 AGS N/A N/A N/A N/A
    887765 8wiv:M (3.41) BS02 MG N/A N/A N/A N/A
    887766 8wiv:O (3.41) BS01 AGS N/A N/A N/A N/A
    887767 8wiv:O (3.41) BS02 MG N/A N/A N/A N/A
    887768 8wiw:3 (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887769 8wiw:8 (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887770 8wiw:A4 (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887771 8wiw:AM (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887772 8wiw:AS (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887773 8wiw:AY (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887774 8wiw:Ae (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887775 8wiw:Ak (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887776 8wiw:Aq (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887777 8wiw:Aw (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887778 8wiw:B5 (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887779 8wiw:BA (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887780 8wiw:BH (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887781 8wiw:BO (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887782 8wiw:BV (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887783 8wiw:Bc (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887784 8wiw:Bj (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887785 8wiw:Bq (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887786 8wiw:Bx (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887787 8wiw:CB (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887788 8wiw:CI (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887789 8wiw:CP (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887790 8wiw:CW (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887791 8wiw:Cd (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887792 8wiw:Ck (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887793 8wiw:Cr (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887794 8wiw:Cy (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887795 8wiw:Z (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887796 8wiw:a (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887797 8wiw:b (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887798 8wiw:c (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887799 8wiw:d (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    887800 8wiw:e (5.6) BS01 peptide N/A N/A P0A1J9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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