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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    886801 8wey:3 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    886802 8wey:3 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    886803 8wey:3 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    886804 8wey:3 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    886805 8wey:3 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    886806 8wey:3 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    886807 8wey:3 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    886808 8wey:3 (1.92) BS12 5X6 N/A GO:0009765 ... N/A 38442179
    886809 8wey:3 (1.92) BS13 5X6 N/A GO:0009765 ... N/A 38442179
    886810 8wey:3 (1.92) BS14 5X6 N/A GO:0009765 ... N/A 38442179
    886811 8wey:4 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    886812 8wey:4 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    886813 8wey:4 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    886814 8wey:4 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    886815 8wey:4 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    886816 8wey:4 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    886817 8wey:4 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    886818 8wey:4 (1.92) BS08 5X6 N/A GO:0009765 ... N/A 38442179
    886819 8wey:4 (1.92) BS09 5X6 N/A GO:0009765 ... N/A 38442179
    886820 8wey:4 (1.92) BS10 5X6 N/A GO:0009765 ... N/A 38442179
    886821 8wey:5 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    886822 8wey:5 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    886823 8wey:5 (1.92) BS03 5X6 N/A GO:0009765 ... N/A 38442179
    886824 8wey:5 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    886825 8wey:5 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    886826 8wey:5 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    886827 8wey:5 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    886828 8wey:5 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    886829 8wey:5 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    886830 8wey:5 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    886831 8wey:5 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    886832 8wey:5 (1.92) BS12 CLA N/A GO:0009765 ... N/A 38442179
    886833 8wey:5 (1.92) BS13 CLA N/A GO:0009765 ... N/A 38442179
    886834 8wey:5 (1.92) BS14 CLA N/A GO:0009765 ... N/A 38442179
    886835 8wey:5 (1.92) BS15 CLA N/A GO:0009765 ... N/A 38442179
    886836 8wey:5 (1.92) BS16 5X6 N/A GO:0009765 ... N/A 38442179
    886837 8wey:5 (1.92) BS17 5X6 N/A GO:0009765 ... N/A 38442179
    886838 8wey:5 (1.92) BS18 5X6 N/A GO:0009765 ... N/A 38442179
    886839 8wey:5 (1.92) BS19 5X6 N/A GO:0009765 ... N/A 38442179
    886840 8wey:A (1.92) BS01 CL0 N/A GO:0009579 ... N/A 38442179
    886841 8wey:A (1.92) BS02 CLA N/A GO:0009579 ... N/A 38442179
    886842 8wey:A (1.92) BS03 CLA N/A GO:0009579 ... N/A 38442179
    886843 8wey:A (1.92) BS04 CLA N/A GO:0009579 ... N/A 38442179
    886844 8wey:A (1.92) BS05 CLA N/A GO:0009579 ... N/A 38442179
    886845 8wey:A (1.92) BS06 CLA N/A GO:0009579 ... N/A 38442179
    886846 8wey:A (1.92) BS07 CLA N/A GO:0009579 ... N/A 38442179
    886847 8wey:A (1.92) BS08 CLA N/A GO:0009579 ... N/A 38442179
    886848 8wey:A (1.92) BS09 CLA N/A GO:0009579 ... N/A 38442179
    886849 8wey:A (1.92) BS10 CLA N/A GO:0009579 ... N/A 38442179
    886850 8wey:A (1.92) BS11 CLA N/A GO:0009579 ... N/A 38442179
    886851 8wey:A (1.92) BS12 CLA N/A GO:0009579 ... N/A 38442179
    886852 8wey:A (1.92) BS13 CLA N/A GO:0009579 ... N/A 38442179
    886853 8wey:A (1.92) BS14 CLA N/A GO:0009579 ... N/A 38442179
    886854 8wey:A (1.92) BS15 CLA N/A GO:0009579 ... N/A 38442179
    886855 8wey:A (1.92) BS16 CLA N/A GO:0009579 ... N/A 38442179
    886856 8wey:A (1.92) BS17 CLA N/A GO:0009579 ... N/A 38442179
    886857 8wey:A (1.92) BS18 CLA N/A GO:0009579 ... N/A 38442179
    886858 8wey:A (1.92) BS19 CLA N/A GO:0009579 ... N/A 38442179
    886859 8wey:A (1.92) BS20 CLA N/A GO:0009579 ... N/A 38442179
    886860 8wey:A (1.92) BS21 CLA N/A GO:0009579 ... N/A 38442179
    886861 8wey:A (1.92) BS22 CLA N/A GO:0009579 ... N/A 38442179
    886862 8wey:A (1.92) BS23 CLA N/A GO:0009579 ... N/A 38442179
    886863 8wey:A (1.92) BS24 CLA N/A GO:0009579 ... N/A 38442179
    886864 8wey:A (1.92) BS25 CLA N/A GO:0009579 ... N/A 38442179
    886865 8wey:A (1.92) BS26 CLA N/A GO:0009579 ... N/A 38442179
    886866 8wey:A (1.92) BS27 CLA N/A GO:0009579 ... N/A 38442179
    886867 8wey:A (1.92) BS28 CLA N/A GO:0009579 ... N/A 38442179
    886868 8wey:A (1.92) BS29 CLA N/A GO:0009579 ... N/A 38442179
    886869 8wey:A (1.92) BS30 CLA N/A GO:0009579 ... N/A 38442179
    886870 8wey:A (1.92) BS31 CLA N/A GO:0009579 ... N/A 38442179
    886871 8wey:A (1.92) BS32 CLA N/A GO:0009579 ... N/A 38442179
    886872 8wey:A (1.92) BS33 CLA N/A GO:0009579 ... N/A 38442179
    886873 8wey:A (1.92) BS34 CLA N/A GO:0009579 ... N/A 38442179
    886874 8wey:A (1.92) BS35 CLA N/A GO:0009579 ... N/A 38442179
    886875 8wey:A (1.92) BS36 CLA N/A GO:0009579 ... N/A 38442179
    886876 8wey:A (1.92) BS37 CLA N/A GO:0009579 ... N/A 38442179
    886877 8wey:A (1.92) BS38 CLA N/A GO:0009579 ... N/A 38442179
    886878 8wey:A (1.92) BS39 CLA N/A GO:0009579 ... N/A 38442179
    886879 8wey:A (1.92) BS40 PQN N/A GO:0009579 ... N/A 38442179
    886880 8wey:A (1.92) BS41 SF4 N/A GO:0009579 ... N/A 38442179
    886881 8wey:A (1.92) BS42 CLA N/A GO:0009579 ... N/A 38442179
    886882 8wey:A (1.92) BS43 CLA N/A GO:0009579 ... N/A 38442179
    886883 8wey:A (1.92) BS44 CLA N/A GO:0009579 ... N/A 38442179
    886884 8wey:A (1.92) BS45 CLA N/A GO:0009579 ... N/A 38442179
    886885 8wey:A (1.92) BS46 CLA N/A GO:0009579 ... N/A 38442179
    886886 8wey:A (1.92) BS47 CLA N/A GO:0009579 ... N/A 38442179
    886887 8wey:A (1.92) BS48 CLA N/A GO:0009579 ... N/A 38442179
    886888 8wey:A (1.92) BS49 CLA N/A GO:0009579 ... N/A 38442179
    886889 8wey:A (1.92) BS50 CLA N/A GO:0009579 ... N/A 38442179
    886890 8wey:A (1.92) BS51 CLA N/A GO:0009579 ... N/A 38442179
    886891 8wey:A (1.92) BS52 CLA N/A GO:0009579 ... N/A 38442179
    886892 8wey:A (1.92) BS53 CLA N/A GO:0009579 ... N/A 38442179
    886893 8wey:B (1.92) BS01 peptide N/A GO:0009522 ... N/A 38442179
    886894 8wey:B (1.92) BS02 CL0 N/A GO:0009522 ... N/A 38442179
    886895 8wey:B (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    886896 8wey:B (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    886897 8wey:B (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    886898 8wey:B (1.92) BS06 SF4 N/A GO:0009522 ... N/A 38442179
    886899 8wey:B (1.92) BS07 CLA N/A GO:0009522 ... N/A 38442179
    886900 8wey:B (1.92) BS08 CLA N/A GO:0009522 ... N/A 38442179
    886901 8wey:B (1.92) BS09 CLA N/A GO:0009522 ... N/A 38442179
    886902 8wey:B (1.92) BS10 CLA N/A GO:0009522 ... N/A 38442179
    886903 8wey:B (1.92) BS11 CLA N/A GO:0009522 ... N/A 38442179
    886904 8wey:B (1.92) BS12 CLA N/A GO:0009522 ... N/A 38442179
    886905 8wey:B (1.92) BS13 CLA N/A GO:0009522 ... N/A 38442179
    886906 8wey:B (1.92) BS14 CLA N/A GO:0009522 ... N/A 38442179
    886907 8wey:B (1.92) BS15 CLA N/A GO:0009522 ... N/A 38442179
    886908 8wey:B (1.92) BS16 CLA N/A GO:0009522 ... N/A 38442179
    886909 8wey:B (1.92) BS17 CLA N/A GO:0009522 ... N/A 38442179
    886910 8wey:B (1.92) BS18 CLA N/A GO:0009522 ... N/A 38442179
    886911 8wey:B (1.92) BS19 CLA N/A GO:0009522 ... N/A 38442179
    886912 8wey:B (1.92) BS20 CLA N/A GO:0009522 ... N/A 38442179
    886913 8wey:B (1.92) BS21 CLA N/A GO:0009522 ... N/A 38442179
    886914 8wey:B (1.92) BS22 CLA N/A GO:0009522 ... N/A 38442179
    886915 8wey:B (1.92) BS23 CLA N/A GO:0009522 ... N/A 38442179
    886916 8wey:B (1.92) BS24 CLA N/A GO:0009522 ... N/A 38442179
    886917 8wey:B (1.92) BS25 CLA N/A GO:0009522 ... N/A 38442179
    886918 8wey:B (1.92) BS26 CLA N/A GO:0009522 ... N/A 38442179
    886919 8wey:B (1.92) BS27 CLA N/A GO:0009522 ... N/A 38442179
    886920 8wey:B (1.92) BS28 CLA N/A GO:0009522 ... N/A 38442179
    886921 8wey:B (1.92) BS29 CLA N/A GO:0009522 ... N/A 38442179
    886922 8wey:B (1.92) BS30 CLA N/A GO:0009522 ... N/A 38442179
    886923 8wey:B (1.92) BS31 CLA N/A GO:0009522 ... N/A 38442179
    886924 8wey:B (1.92) BS32 CLA N/A GO:0009522 ... N/A 38442179
    886925 8wey:B (1.92) BS33 CLA N/A GO:0009522 ... N/A 38442179
    886926 8wey:B (1.92) BS34 CLA N/A GO:0009522 ... N/A 38442179
    886927 8wey:B (1.92) BS35 CLA N/A GO:0009522 ... N/A 38442179
    886928 8wey:B (1.92) BS36 CLA N/A GO:0009522 ... N/A 38442179
    886929 8wey:B (1.92) BS37 CLA N/A GO:0009522 ... N/A 38442179
    886930 8wey:B (1.92) BS38 CLA N/A GO:0009522 ... N/A 38442179
    886931 8wey:B (1.92) BS39 CLA N/A GO:0009522 ... N/A 38442179
    886932 8wey:B (1.92) BS40 CLA N/A GO:0009522 ... N/A 38442179
    886933 8wey:B (1.92) BS41 CLA N/A GO:0009522 ... N/A 38442179
    886934 8wey:B (1.92) BS42 CLA N/A GO:0009522 ... N/A 38442179
    886935 8wey:B (1.92) BS43 CLA N/A GO:0009522 ... N/A 38442179
    886936 8wey:B (1.92) BS44 CLA N/A GO:0009522 ... N/A 38442179
    886937 8wey:B (1.92) BS45 CLA N/A GO:0009522 ... N/A 38442179
    886938 8wey:B (1.92) BS46 CLA N/A GO:0009522 ... N/A 38442179
    886939 8wey:B (1.92) BS47 CLA N/A GO:0009522 ... N/A 38442179
    886940 8wey:B (1.92) BS48 PQN N/A GO:0009522 ... N/A 38442179
    886941 8wey:B (1.92) BS49 CLA N/A GO:0009522 ... N/A 38442179
    886942 8wey:B (1.92) BS50 CLA N/A GO:0009522 ... N/A 38442179
    886943 8wey:B (1.92) BS51 CLA N/A GO:0009522 ... N/A 38442179
    886944 8wey:C (1.92) BS01 SF4 N/A GO:0009055 ... N/A 38442179
    886945 8wey:C (1.92) BS02 SF4 N/A GO:0009055 ... N/A 38442179
    886946 8wey:F (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    886947 8wey:F (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    886948 8wey:F (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    886949 8wey:F (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    886950 8wey:F (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    886951 8wey:F (1.92) BS06 CLA N/A GO:0009522 ... N/A 38442179
    886952 8wey:F (1.92) BS07 CLA N/A GO:0009522 ... N/A 38442179
    886953 8wey:F (1.92) BS08 5X6 N/A GO:0009522 ... N/A 38442179
    886954 8wey:F (1.92) BS09 CLA N/A GO:0009522 ... N/A 38442179
    886955 8wey:I (1.92) BS01 peptide N/A GO:0009522 ... N/A 38442179
    886956 8wey:I (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    886957 8wey:I (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    886958 8wey:I (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    886959 8wey:J (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    886960 8wey:J (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    886961 8wey:J (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    886962 8wey:J (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    886963 8wey:J (1.92) BS05 5X6 N/A GO:0009522 ... N/A 38442179
    886964 8wey:K (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    886965 8wey:K (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    886966 8wey:K (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    886967 8wey:K (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    886968 8wey:K (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    886969 8wey:L (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    886970 8wey:L (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    886971 8wey:L (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    886972 8wey:L (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    886973 8wey:L (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    886974 8wey:L (1.92) BS06 CLA N/A GO:0009522 ... N/A 38442179
    886975 8wey:O (1.92) BS01 CLA N/A N/A N/A 38442179
    886976 8wey:O (1.92) BS02 CLA N/A N/A N/A 38442179
    886977 8wey:O (1.92) BS03 CLA N/A N/A N/A 38442179
    886978 8wey:O (1.92) BS04 CLA N/A N/A N/A 38442179
    886979 8wf5:A (1.72) BS01 WC5 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38780472
    886980 8wf6:A (2.47) BS01 peptide N/A N/A P63104 N/A
    886981 8wf6:B (2.47) BS01 peptide N/A N/A P63104 N/A
    886982 8wf6:C (2.47) BS01 peptide N/A N/A P63104 N/A
    886983 8wf6:D (2.47) BS01 peptide N/A N/A P63104 N/A
    886984 8wfi:A (2.58) BS01 GLY ? GO:0005283 ... P48067 38513663
    886985 8wfj:A (3.35) BS01 W5F ? GO:0005283 ... P48067 38513663
    886986 8wfk:A (3.22) BS01 W5O ? GO:0005283 ... P48067 38513663
    886987 8wfl:A (3.03) BS01 W5X ? GO:0005283 ... P48067 38513663
    886988 8wfo:A (1.55) BS01 ZN N/A N/A A0A6P5Y0F4 N/A
    886989 8wfo:A (1.55) BS02 ZN N/A N/A A0A6P5Y0F4 N/A
    886990 8wfo:B (1.55) BS01 ZN N/A N/A A0A6P5Y0F4 N/A
    886991 8wfo:B (1.55) BS02 ZN N/A N/A A0A6P5Y0F4 N/A
    886992 8wfp:A (1.99) BS01 peptide N/A N/A P53350 38105611
    886993 8wfp:A (1.99) BS02 peptide N/A N/A P53350 38105611
    886994 8wfp:B (1.99) BS01 peptide N/A N/A P53350 38105611
    886995 8wfq:A (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    886996 8wfq:B (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    886997 8wfq:C (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    886998 8wfq:D (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    886999 8wfq:E (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    887000 8wfq:F (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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