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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    886401 8wdu:9 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    886402 8wdu:9 (2.24) BS03 CRT ? GO:0005886 ... D3RP69 38347078
    886403 8wdu:9 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    886404 8wdu:9 (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    886405 8wdu:A (2.24) BS01 BCL ? GO:0005886 ... D3RP69 38347078
    886406 8wdu:A (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886407 8wdu:A (2.24) BS03 CRT ? GO:0005886 ... D3RP69 38347078
    886408 8wdu:A (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886409 8wdu:A (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886410 8wdu:B (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886411 8wdu:B (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886412 8wdu:B (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886413 8wdu:C (2.24) BS01 HEM ? GO:0005506 ... O82947 38347078
    886414 8wdu:C (2.24) BS02 HEM ? GO:0005506 ... O82947 38347078
    886415 8wdu:C (2.24) BS03 HEM ? GO:0005506 ... O82947 38347078
    886416 8wdu:C (2.24) BS04 HEM ? GO:0005506 ... O82947 38347078
    886417 8wdu:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    886418 8wdu:C (2.24) BS06 Z41 ? GO:0005506 ... O82947 38347078
    886419 8wdu:D (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    886420 8wdu:D (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    886421 8wdu:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    886422 8wdu:D (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    886423 8wdu:D (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    886424 8wdu:D (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    886425 8wdu:E (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886426 8wdu:E (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886427 8wdu:E (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    886428 8wdu:F (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    886429 8wdu:F (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    886430 8wdu:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    886431 8wdu:F (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    886432 8wdu:F (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    886433 8wdu:F (2.24) BS06 BCL ? GO:0005886 ... D3RP74 38347078
    886434 8wdu:F (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    886435 8wdu:G (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886436 8wdu:G (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886437 8wdu:G (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    886438 8wdu:I (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886439 8wdu:I (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886440 8wdu:I (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886441 8wdu:I (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886442 8wdu:I (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886443 8wdu:J (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886444 8wdu:J (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886445 8wdu:J (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886446 8wdu:K (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886447 8wdu:K (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886448 8wdu:K (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886449 8wdu:K (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886450 8wdu:L (2.24) BS01 BCL ? GO:0009772 ... P51762 38347078
    886451 8wdu:L (2.24) BS02 BPH ? GO:0009772 ... P51762 38347078
    886452 8wdu:L (2.24) BS03 UQ8 ? GO:0009772 ... P51762 38347078
    886453 8wdu:L (2.24) BS04 UQ8 ? GO:0009772 ... P51762 38347078
    886454 8wdu:L (2.24) BS05 BCL ? GO:0009772 ... P51762 38347078
    886455 8wdu:L (2.24) BS06 UQ8 ? GO:0009772 ... P51762 38347078
    886456 8wdu:L (2.24) BS07 FE ? GO:0009772 ... P51762 38347078
    886457 8wdu:L (2.24) BS08 BCL ? GO:0009772 ... P51762 38347078
    886458 8wdu:L (2.24) BS09 BPH ? GO:0009772 ... P51762 38347078
    886459 8wdu:L (2.24) BS10 MQ8 ? GO:0009772 ... P51762 38347078
    886460 8wdu:M (2.24) BS01 BPH ? GO:0009772 ... P51763 38347078
    886461 8wdu:M (2.24) BS02 BCL ? GO:0009772 ... P51763 38347078
    886462 8wdu:M (2.24) BS03 UQ8 ? GO:0009772 ... P51763 38347078
    886463 8wdu:M (2.24) BS04 FE ? GO:0009772 ... P51763 38347078
    886464 8wdu:M (2.24) BS05 BCL ? GO:0009772 ... P51763 38347078
    886465 8wdu:M (2.24) BS06 BCL ? GO:0009772 ... P51763 38347078
    886466 8wdu:M (2.24) BS07 BPH ? GO:0009772 ... P51763 38347078
    886467 8wdu:M (2.24) BS08 MQ8 ? GO:0009772 ... P51763 38347078
    886468 8wdu:M (2.24) BS09 CRT ? GO:0009772 ... P51763 38347078
    886469 8wdu:N (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886470 8wdu:N (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886471 8wdu:N (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886472 8wdu:O (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886473 8wdu:O (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    886474 8wdu:O (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886475 8wdu:O (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    886476 8wdu:O (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886477 8wdu:P (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886478 8wdu:P (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886479 8wdu:P (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886480 8wdu:Q (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886481 8wdu:Q (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886482 8wdu:Q (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886483 8wdu:Q (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886484 8wdu:Q (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    886485 8wdu:Q (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    886486 8wdu:R (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886487 8wdu:R (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886488 8wdu:R (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886489 8wdu:S (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    886490 8wdu:S (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    886491 8wdu:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    886492 8wdu:S (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    886493 8wdu:S (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    886494 8wdu:S (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    886495 8wdu:T (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886496 8wdu:T (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886497 8wdu:T (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    886498 8wdu:U (2.24) BS01 UQ8 ? GO:0005886 ... D3RP74 38347078
    886499 8wdu:U (2.24) BS02 CRT ? GO:0005886 ... D3RP74 38347078
    886500 8wdu:U (2.24) BS03 BCL ? GO:0005886 ... D3RP74 38347078
    886501 8wdu:U (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    886502 8wdu:U (2.24) BS05 BCL ? GO:0005886 ... D3RP74 38347078
    886503 8wdu:U (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    886504 8wdu:U (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    886505 8wdu:V (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886506 8wdu:V (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886507 8wdu:V (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    886508 8wdu:W (2.24) BS01 UQ8 ? GO:0005886 ... D3RP74 38347078
    886509 8wdu:W (2.24) BS02 CRT ? GO:0005886 ... D3RP74 38347078
    886510 8wdu:W (2.24) BS03 BCL ? GO:0005886 ... D3RP74 38347078
    886511 8wdu:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    886512 8wdu:W (2.24) BS05 BCL ? GO:0005886 ... D3RP74 38347078
    886513 8wdu:W (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    886514 8wdu:W (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    886515 8wdu:X (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886516 8wdu:X (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886517 8wdu:X (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    886518 8wdu:Y (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    886519 8wdu:Y (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    886520 8wdu:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    886521 8wdu:Y (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    886522 8wdu:Y (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    886523 8wdu:Y (2.24) BS06 BCL ? GO:0005886 ... D3RP74 38347078
    886524 8wdu:Y (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    886525 8wdu:Z (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886526 8wdu:Z (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886527 8wdu:Z (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    886528 8wdv:0 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886529 8wdv:0 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886530 8wdv:0 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886531 8wdv:1 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886532 8wdv:1 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886533 8wdv:1 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886534 8wdv:1 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886535 8wdv:1 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886536 8wdv:2 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886537 8wdv:2 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886538 8wdv:2 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886539 8wdv:3 (2.24) BS01 CRT ? GO:0005886 ... D3RP67 38347078
    886540 8wdv:3 (2.24) BS02 BCL ? GO:0005886 ... D3RP67 38347078
    886541 8wdv:3 (2.24) BS03 BCL ? GO:0005886 ... D3RP67 38347078
    886542 8wdv:3 (2.24) BS04 CRT ? GO:0005886 ... D3RP67 38347078
    886543 8wdv:3 (2.24) BS05 BCL ? GO:0005886 ... D3RP67 38347078
    886544 8wdv:4 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886545 8wdv:4 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886546 8wdv:4 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886547 8wdv:5 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886548 8wdv:5 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886549 8wdv:5 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886550 8wdv:5 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886551 8wdv:6 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886552 8wdv:6 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886553 8wdv:6 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886554 8wdv:7 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 38347078
    886555 8wdv:7 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    886556 8wdv:7 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886557 8wdv:7 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    886558 8wdv:7 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886559 8wdv:7 (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    886560 8wdv:8 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886561 8wdv:8 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886562 8wdv:8 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886563 8wdv:9 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886564 8wdv:9 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    886565 8wdv:9 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886566 8wdv:9 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    886567 8wdv:9 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886568 8wdv:A (2.24) BS01 BCL ? GO:0005886 ... D3RP69 38347078
    886569 8wdv:A (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886570 8wdv:A (2.24) BS03 CRT ? GO:0005886 ... D3RP69 38347078
    886571 8wdv:A (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886572 8wdv:A (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886573 8wdv:B (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886574 8wdv:B (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886575 8wdv:B (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886576 8wdv:C (2.24) BS01 HEM ? GO:0005506 ... O82947 38347078
    886577 8wdv:C (2.24) BS02 HEM ? GO:0005506 ... O82947 38347078
    886578 8wdv:C (2.24) BS03 HEM ? GO:0005506 ... O82947 38347078
    886579 8wdv:C (2.24) BS04 HEM ? GO:0005506 ... O82947 38347078
    886580 8wdv:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    886581 8wdv:C (2.24) BS06 Z41 ? GO:0005506 ... O82947 38347078
    886582 8wdv:D (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    886583 8wdv:D (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    886584 8wdv:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    886585 8wdv:D (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    886586 8wdv:D (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    886587 8wdv:D (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    886588 8wdv:E (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886589 8wdv:E (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886590 8wdv:E (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    886591 8wdv:F (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    886592 8wdv:F (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    886593 8wdv:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    886594 8wdv:F (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    886595 8wdv:F (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    886596 8wdv:F (2.24) BS06 BCL ? GO:0005886 ... D3RP74 38347078
    886597 8wdv:F (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    886598 8wdv:G (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    886599 8wdv:G (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    886600 8wdv:G (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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