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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    886201 8wck:4 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    886202 8wcl:5 (2.65) BS01 A86 N/A N/A N/A 39030906
    886203 8wcl:5 (2.65) BS02 A86 N/A N/A N/A 39030906
    886204 8wcl:5 (2.65) BS03 A86 N/A N/A N/A 39030906
    886205 8wcl:5 (2.65) BS04 A86 N/A N/A N/A 39030906
    886206 8wcl:5 (2.65) BS05 A86 N/A N/A N/A 39030906
    886207 8wcl:5 (2.65) BS06 CLA N/A N/A N/A 39030906
    886208 8wcl:5 (2.65) BS07 CLA N/A N/A N/A 39030906
    886209 8wcl:5 (2.65) BS08 KC2 N/A N/A N/A 39030906
    886210 8wcl:5 (2.65) BS09 CLA N/A N/A N/A 39030906
    886211 8wcl:5 (2.65) BS10 KC2 N/A N/A N/A 39030906
    886212 8wcl:5 (2.65) BS11 KC1 N/A N/A N/A 39030906
    886213 8wcl:5 (2.65) BS12 CLA N/A N/A N/A 39030906
    886214 8wcl:5 (2.65) BS13 KC1 N/A N/A N/A 39030906
    886215 8wcl:5 (2.65) BS14 CLA N/A N/A N/A 39030906
    886216 8wcl:5 (2.65) BS15 CLA N/A N/A N/A 39030906
    886217 8wcl:5 (2.65) BS16 A86 N/A N/A N/A 39030906
    886218 8wcl:5 (2.65) BS17 A86 N/A N/A N/A 39030906
    886219 8wcl:5 (2.65) BS18 CLA N/A N/A N/A 39030906
    886220 8wcl:6 (2.65) BS01 A86 N/A N/A N/A 39030906
    886221 8wcl:6 (2.65) BS02 A86 N/A N/A N/A 39030906
    886222 8wcl:6 (2.65) BS03 A86 N/A N/A N/A 39030906
    886223 8wcl:6 (2.65) BS04 A86 N/A N/A N/A 39030906
    886224 8wcl:6 (2.65) BS05 CLA N/A N/A N/A 39030906
    886225 8wcl:6 (2.65) BS06 CLA N/A N/A N/A 39030906
    886226 8wcl:6 (2.65) BS07 KC2 N/A N/A N/A 39030906
    886227 8wcl:6 (2.65) BS08 CLA N/A N/A N/A 39030906
    886228 8wcl:6 (2.65) BS09 KC2 N/A N/A N/A 39030906
    886229 8wcl:6 (2.65) BS10 KC1 N/A N/A N/A 39030906
    886230 8wcl:6 (2.65) BS11 CLA N/A N/A N/A 39030906
    886231 8wcl:6 (2.65) BS12 KC1 N/A N/A N/A 39030906
    886232 8wcl:6 (2.65) BS13 CLA N/A N/A N/A 39030906
    886233 8wcl:6 (2.65) BS14 CLA N/A N/A N/A 39030906
    886234 8wcl:6 (2.65) BS15 A86 N/A N/A N/A 39030906
    886235 8wcl:6 (2.65) BS16 A86 N/A N/A N/A 39030906
    886236 8wcl:7 (2.65) BS01 CLA N/A N/A N/A 39030906
    886237 8wcl:7 (2.65) BS02 A86 N/A N/A N/A 39030906
    886238 8wcl:7 (2.65) BS03 A86 N/A N/A N/A 39030906
    886239 8wcl:7 (2.65) BS04 A86 N/A N/A N/A 39030906
    886240 8wcl:7 (2.65) BS05 A86 N/A N/A N/A 39030906
    886241 8wcl:7 (2.65) BS06 A86 N/A N/A N/A 39030906
    886242 8wcl:7 (2.65) BS07 A86 N/A N/A N/A 39030906
    886243 8wcl:7 (2.65) BS08 CLA N/A N/A N/A 39030906
    886244 8wcl:7 (2.65) BS09 CLA N/A N/A N/A 39030906
    886245 8wcl:7 (2.65) BS10 KC2 N/A N/A N/A 39030906
    886246 8wcl:7 (2.65) BS11 CLA N/A N/A N/A 39030906
    886247 8wcl:7 (2.65) BS12 KC2 N/A N/A N/A 39030906
    886248 8wcl:7 (2.65) BS13 KC1 N/A N/A N/A 39030906
    886249 8wcl:7 (2.65) BS14 CLA N/A N/A N/A 39030906
    886250 8wcl:7 (2.65) BS15 KC1 N/A N/A N/A 39030906
    886251 8wcl:7 (2.65) BS16 CLA N/A N/A N/A 39030906
    886252 8wcl:8 (2.65) BS01 CLA N/A N/A N/A 39030906
    886253 8wcl:8 (2.65) BS02 A86 N/A N/A N/A 39030906
    886254 8wcl:8 (2.65) BS03 A86 N/A N/A N/A 39030906
    886255 8wcl:8 (2.65) BS04 A86 N/A N/A N/A 39030906
    886256 8wcl:8 (2.65) BS05 A86 N/A N/A N/A 39030906
    886257 8wcl:8 (2.65) BS06 A86 N/A N/A N/A 39030906
    886258 8wcl:8 (2.65) BS07 A86 N/A N/A N/A 39030906
    886259 8wcl:8 (2.65) BS08 CLA N/A N/A N/A 39030906
    886260 8wcl:8 (2.65) BS09 KC2 N/A N/A N/A 39030906
    886261 8wcl:8 (2.65) BS10 CLA N/A N/A N/A 39030906
    886262 8wcl:8 (2.65) BS11 KC2 N/A N/A N/A 39030906
    886263 8wcl:8 (2.65) BS12 KC1 N/A N/A N/A 39030906
    886264 8wcl:8 (2.65) BS13 CLA N/A N/A N/A 39030906
    886265 8wcl:8 (2.65) BS14 KC1 N/A N/A N/A 39030906
    886266 8wcl:8 (2.65) BS15 CLA N/A N/A N/A 39030906
    886267 8wcl:8 (2.65) BS16 CLA N/A N/A N/A 39030906
    886268 8wcl:8 (2.65) BS17 CLA N/A N/A N/A 39030906
    886269 8wcl:8 (2.65) BS18 A86 N/A N/A N/A 39030906
    886270 8wcl:9 (2.65) BS01 A86 N/A N/A N/A 39030906
    886271 8wcl:9 (2.65) BS02 A86 N/A N/A N/A 39030906
    886272 8wcl:9 (2.65) BS03 A86 N/A N/A N/A 39030906
    886273 8wcl:9 (2.65) BS04 A86 N/A N/A N/A 39030906
    886274 8wcl:9 (2.65) BS05 A86 N/A N/A N/A 39030906
    886275 8wcl:9 (2.65) BS06 A86 N/A N/A N/A 39030906
    886276 8wcl:9 (2.65) BS07 CLA N/A N/A N/A 39030906
    886277 8wcl:9 (2.65) BS08 CLA N/A N/A N/A 39030906
    886278 8wcl:9 (2.65) BS09 KC2 N/A N/A N/A 39030906
    886279 8wcl:9 (2.65) BS10 CLA N/A N/A N/A 39030906
    886280 8wcl:9 (2.65) BS11 CLA N/A N/A N/A 39030906
    886281 8wcl:9 (2.65) BS12 CLA N/A N/A N/A 39030906
    886282 8wcl:9 (2.65) BS13 CLA N/A N/A N/A 39030906
    886283 8wcl:9 (2.65) BS14 KC1 N/A N/A N/A 39030906
    886284 8wcl:9 (2.65) BS15 CLA N/A N/A N/A 39030906
    886285 8wcl:9 (2.65) BS16 CLA N/A N/A N/A 39030906
    886286 8wcn:A (3.2) BS01 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886287 8wcn:A (3.2) BS02 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886288 8wcn:A (3.2) BS03 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886289 8wcn:B (3.2) BS01 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886290 8wcn:B (3.2) BS02 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886291 8wcn:B (3.2) BS03 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886292 8wcn:B (3.2) BS04 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886293 8wcn:B (3.2) BS05 MG 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    886294 8wco:A (2.6) BS01 ACO ? GO:0000287 ... Q9I562 38677288
    886295 8wco:A (2.6) BS02 ACO ? GO:0000287 ... Q9I562 38677288
    886296 8wco:B (2.6) BS01 ACO ? GO:0000287 ... Q9I562 38677288
    886297 8wco:B (2.6) BS02 ACO ? GO:0000287 ... Q9I562 38677288
    886298 8wco:C (2.6) BS01 ACO ? GO:0000287 ... Q9I562 38677288
    886299 8wco:C (2.6) BS02 ACO ? GO:0000287 ... Q9I562 38677288
    886300 8wcs:A (3.1) BS01 rna N/A N/A N/A 38661236
    886301 8wd0:A (2.6) BS01 GTP N/A GO:0000226 ... P81947 38905886
    886302 8wd0:A (2.6) BS02 CA N/A GO:0000226 ... P81947 38905886
    886303 8wd0:B (2.6) BS01 W4F N/A GO:0005525 ... A0A287AGU7 38905886
    886304 8wd0:B (2.6) BS02 GDP N/A GO:0005525 ... A0A287AGU7 38905886
    886305 8wd0:C (2.6) BS01 GTP N/A GO:0000226 ... P81947 38905886
    886306 8wd0:C (2.6) BS02 CA N/A GO:0000226 ... P81947 38905886
    886307 8wd0:D (2.6) BS01 GTP N/A GO:0005525 ... A0A287AGU7 38905886
    886308 8wd0:D (2.6) BS02 W4F N/A GO:0005525 ... A0A287AGU7 38905886
    886309 8wd0:F (2.6) BS01 ACP N/A GO:0046872 ... A0A8V0Z8P0 38905886
    886310 8wd2:A (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    886311 8wd2:B (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    886312 8wd3:A (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    886313 8wd3:B (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    886314 8wd4:A (2.55) BS01 W7W 2.7.10.1 GO:0004672 ... P00533 38065292
    886315 8wd8:A (2.9) BS01 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886316 8wd8:A (2.9) BS02 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886317 8wd8:A (2.9) BS03 ZN ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886318 8wd8:A (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886319 8wd8:A (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886320 8wd8:A (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886321 8wd8:B (2.9) BS01 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886322 8wd8:B (2.9) BS02 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886323 8wd8:B (2.9) BS03 ZN ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886324 8wd8:B (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886325 8wd8:B (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886326 8wd8:B (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    886327 8wda:A (3.26) BS01 peptide N/A N/A I6X811 N/A
    886328 8wdb:D (2.86) BS01 ATP N/A N/A I6Y482 N/A
    886329 8wdb:D (2.86) BS02 ATP N/A N/A I6Y482 N/A
    886330 8wdb:D (2.86) BS03 MG N/A N/A I6Y482 N/A
    886331 8wdb:D (2.86) BS04 MG N/A N/A I6Y482 N/A
    886332 8wdd:A (3.9) BS01 VZK N/A N/A P02769 N/A
    886333 8wdd:A (3.9) BS02 VZK N/A N/A P02769 N/A
    886334 8wdd:B (3.9) BS01 VZK N/A N/A P02769 N/A
    886335 8wdg:A (0.99) BS01 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    886336 8wdg:A (0.99) BS02 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    886337 8wdg:A (0.99) BS03 XYL 5.3.1.5 GO:0000287 ... P24300 37793321
    886338 8wdg:A (0.99) BS04 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    886339 8wdh:A (1.7) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    886340 8wdh:A (1.7) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    886341 8wdk:V (3.64) BS01 W6U N/A N/A P40337 N/A
    886342 8wdk:W (3.64) BS01 W6U N/A N/A P30291 N/A
    886343 8wdn:A (1.55) BS01 ZN N/A N/A Q08499 38489246
    886344 8wdn:A (1.55) BS02 W8E N/A N/A Q08499 38489246
    886345 8wdn:B (1.55) BS01 ZN N/A N/A Q08499 38489246
    886346 8wdn:B (1.55) BS02 W8E N/A N/A Q08499 38489246
    886347 8wdo:A (1.67) BS01 ZN N/A N/A Q08499 38489246
    886348 8wdo:A (1.67) BS02 W8O N/A N/A Q08499 38489246
    886349 8wdo:B (1.67) BS01 ZN N/A N/A Q08499 38489246
    886350 8wdo:B (1.67) BS02 W8O N/A N/A Q08499 38489246
    886351 8wdq:A (2.2) BS01 IPD N/A N/A Q9HXI4 N/A
    886352 8wdq:A (2.2) BS02 CA N/A N/A Q9HXI4 N/A
    886353 8wdq:A (2.2) BS03 CA N/A N/A Q9HXI4 N/A
    886354 8wdq:B (2.2) BS01 IPD N/A N/A Q9HXI4 N/A
    886355 8wdq:B (2.2) BS02 CA N/A N/A Q9HXI4 N/A
    886356 8wdq:B (2.2) BS03 CA N/A N/A Q9HXI4 N/A
    886357 8wdr:A (3.47) BS01 ZN N/A N/A Q9BYF1 38467833
    886358 8wdr:C (3.47) BS01 ZN N/A N/A Q9BYF1 38467833
    886359 8wds:A (3.4) BS01 ZN N/A N/A Q9BYF1 38467833
    886360 8wds:C (3.4) BS01 ZN N/A N/A Q9BYF1 38467833
    886361 8wdt:A (3.34) BS01 WCH ? GO:0001609 ... P29274 38171234
    886362 8wdu:0 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886363 8wdu:0 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886364 8wdu:0 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886365 8wdu:1 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886366 8wdu:1 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886367 8wdu:1 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886368 8wdu:1 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886369 8wdu:2 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886370 8wdu:2 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886371 8wdu:2 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886372 8wdu:3 (2.24) BS01 Z41 ? GO:0005886 ... D3RP67 38347078
    886373 8wdu:3 (2.24) BS02 CRT ? GO:0005886 ... D3RP67 38347078
    886374 8wdu:3 (2.24) BS03 BCL ? GO:0005886 ... D3RP67 38347078
    886375 8wdu:3 (2.24) BS04 BCL ? GO:0005886 ... D3RP67 38347078
    886376 8wdu:3 (2.24) BS05 CRT ? GO:0005886 ... D3RP67 38347078
    886377 8wdu:3 (2.24) BS06 BCL ? GO:0005886 ... D3RP67 38347078
    886378 8wdu:3 (2.24) BS07 CRT ? GO:0005886 ... D3RP67 38347078
    886379 8wdu:4 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886380 8wdu:4 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886381 8wdu:4 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886382 8wdu:5 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    886383 8wdu:5 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    886384 8wdu:5 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886385 8wdu:5 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    886386 8wdu:5 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886387 8wdu:6 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886388 8wdu:6 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886389 8wdu:6 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886390 8wdu:7 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 38347078
    886391 8wdu:7 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    886392 8wdu:7 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    886393 8wdu:7 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    886394 8wdu:7 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    886395 8wdu:7 (2.24) BS06 BCL ? GO:0005886 ... D3RP69 38347078
    886396 8wdu:7 (2.24) BS07 CRT ? GO:0005886 ... D3RP69 38347078
    886397 8wdu:8 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    886398 8wdu:8 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    886399 8wdu:8 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    886400 8wdu:9 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 38347078
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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