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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    886001 8wb4:a (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    886002 8wb4:a (2.47) BS10 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    886003 8wb4:a (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    886004 8wb4:a (2.47) BS12 8CT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    886005 8wb4:b (2.47) BS01 8CT ? GO:0009523 ... A0A222AIE3 38806516
    886006 8wb4:b (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886007 8wb4:b (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886008 8wb4:b (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886009 8wb4:b (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886010 8wb4:b (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886011 8wb4:b (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886012 8wb4:b (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886013 8wb4:b (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886014 8wb4:b (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886015 8wb4:b (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886016 8wb4:b (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886017 8wb4:b (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886018 8wb4:b (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886019 8wb4:b (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886020 8wb4:b (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886021 8wb4:b (2.47) BS17 CLA ? GO:0009523 ... A0A222AIE3 38806516
    886022 8wb4:b (2.47) BS18 8CT ? GO:0009523 ... A0A222AIE3 38806516
    886023 8wb4:b (2.47) BS19 8CT ? GO:0009523 ... A0A222AIE3 38806516
    886024 8wb4:c (2.47) BS01 CLA ? GO:0005737 ... A0A222AI36 38806516
    886025 8wb4:c (2.47) BS02 CLA ? GO:0005737 ... A0A222AI36 38806516
    886026 8wb4:c (2.47) BS03 CLA ? GO:0005737 ... A0A222AI36 38806516
    886027 8wb4:c (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    886028 8wb4:c (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    886029 8wb4:c (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    886030 8wb4:c (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    886031 8wb4:c (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    886032 8wb4:c (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    886033 8wb4:c (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    886034 8wb4:c (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    886035 8wb4:c (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516
    886036 8wb4:c (2.47) BS13 CLA ? GO:0005737 ... A0A222AI36 38806516
    886037 8wb4:c (2.47) BS14 8CT ? GO:0005737 ... A0A222AI36 38806516
    886038 8wb4:c (2.47) BS15 8CT ? GO:0005737 ... A0A222AI36 38806516
    886039 8wb4:c (2.47) BS16 8CT ? GO:0005737 ... A0A222AI36 38806516
    886040 8wb4:c (2.47) BS17 OEX ? GO:0005737 ... A0A222AI36 38806516
    886041 8wb4:d (2.47) BS01 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886042 8wb4:d (2.47) BS02 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886043 8wb4:d (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886044 8wb4:d (2.47) BS04 FE2 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886045 8wb4:d (2.47) BS05 8CT 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886046 8wb4:d (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886047 8wb4:d (2.47) BS07 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886048 8wb4:d (2.47) BS08 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886049 8wb4:d (2.47) BS09 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    886050 8wb4:e (2.47) BS01 peptide ? GO:0005506 ... A0A222AI74 38806516
    886051 8wb4:e (2.47) BS02 HEM ? GO:0005506 ... A0A222AI74 38806516
    886052 8wb4:f (2.47) BS01 peptide ? GO:0005506 ... A0A222AI51 38806516
    886053 8wb4:f (2.47) BS02 HEM ? GO:0005506 ... A0A222AI51 38806516
    886054 8wb4:g (2.47) BS01 CLA N/A N/A N/A 38806516
    886055 8wb4:h (2.47) BS01 CLA ? GO:0009523 ... A0A222AIE4 38806516
    886056 8wb4:h (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE4 38806516
    886057 8wb4:h (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE4 38806516
    886058 8wb4:h (2.47) BS04 8CT ? GO:0009523 ... A0A222AIE4 38806516
    886059 8wb4:i (2.47) BS01 CLA ? GO:0005737 ... A0A222AI80 38806516
    886060 8wb4:i (2.47) BS02 8CT ? GO:0005737 ... A0A222AI80 38806516
    886061 8wb4:i (2.47) BS03 CLA ? GO:0005737 ... A0A222AI80 38806516
    886062 8wb4:k (2.47) BS01 CLA ? GO:0005737 ... A0A222AIA0 38806516
    886063 8wb4:k (2.47) BS02 CLA ? GO:0005737 ... A0A222AIA0 38806516
    886064 8wb4:k (2.47) BS03 8CT ? GO:0005737 ... A0A222AIA0 38806516
    886065 8wb4:k (2.47) BS04 8CT ? GO:0005737 ... A0A222AIA0 38806516
    886066 8wb4:m (2.47) BS01 8CT ? N/A L1IFP3 38806516
    886067 8wb4:p (2.47) BS01 CLA N/A N/A N/A 38806516
    886068 8wb4:p (2.47) BS02 II0 N/A N/A N/A 38806516
    886069 8wb4:p (2.47) BS03 CLA N/A N/A N/A 38806516
    886070 8wb4:p (2.47) BS04 II0 N/A N/A N/A 38806516
    886071 8wb4:p (2.47) BS05 CLA N/A N/A N/A 38806516
    886072 8wb4:p (2.47) BS06 CLA N/A N/A N/A 38806516
    886073 8wb4:p (2.47) BS07 CLA N/A N/A N/A 38806516
    886074 8wb4:p (2.47) BS08 CLA N/A N/A N/A 38806516
    886075 8wb4:p (2.47) BS09 CLA N/A N/A N/A 38806516
    886076 8wb4:p (2.47) BS10 CLA N/A N/A N/A 38806516
    886077 8wb4:p (2.47) BS11 CLA N/A N/A N/A 38806516
    886078 8wb4:p (2.47) BS12 CLA N/A N/A N/A 38806516
    886079 8wb4:p (2.47) BS13 CLA N/A N/A N/A 38806516
    886080 8wb4:p (2.47) BS14 KC2 N/A N/A N/A 38806516
    886081 8wb4:p (2.47) BS15 CLA N/A N/A N/A 38806516
    886082 8wb4:p (2.47) BS16 CLA N/A N/A N/A 38806516
    886083 8wb4:p (2.47) BS17 II0 N/A N/A N/A 38806516
    886084 8wb4:p (2.47) BS18 II0 N/A N/A N/A 38806516
    886085 8wb4:p (2.47) BS19 II0 N/A N/A N/A 38806516
    886086 8wb4:p (2.47) BS20 IHT N/A N/A N/A 38806516
    886087 8wb4:p (2.47) BS21 CLA N/A N/A N/A 38806516
    886088 8wb4:s (2.47) BS01 peptide N/A N/A N/A 38806516
    886089 8wb4:s (2.47) BS02 CLA N/A N/A N/A 38806516
    886090 8wb4:s (2.47) BS03 CLA N/A N/A N/A 38806516
    886091 8wb4:s (2.47) BS04 CLA N/A N/A N/A 38806516
    886092 8wb4:s (2.47) BS05 CLA N/A N/A N/A 38806516
    886093 8wb4:s (2.47) BS06 CLA N/A N/A N/A 38806516
    886094 8wb4:s (2.47) BS07 CLA N/A N/A N/A 38806516
    886095 8wb4:v (2.47) BS01 HEM ? N/A A0A222AI35 38806516
    886096 8wb4:x (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    886097 8wb4:y (2.47) BS01 8CT ? GO:0009523 ... A0A222AI69 38806516
    886098 8wb4:z (2.47) BS01 KC2 ? GO:0009523 ... A0A222AI96 38806516
    886099 8wb4:z (2.47) BS02 8CT ? GO:0009523 ... A0A222AI96 38806516
    886100 8wba:A (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    886101 8wba:A (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    886102 8wba:B (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    886103 8wba:B (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    886104 8wbd:B (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    886105 8wbd:C (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    886106 8wbd:b (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    886107 8wbq:A (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    886108 8wbq:B (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    886109 8wbt:A (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    886110 8wbt:B (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    886111 8wbt:C (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    886112 8wbt:D (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    886113 8wbu:A (1.7) BS01 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    886114 8wbu:A (1.7) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    886115 8wbv:A (1.95) BS01 DNO 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    886116 8wbv:A (1.95) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    886117 8wbx:B (3.23) BS01 A8S ? GO:0005524 ... Q84TH5 38050355
    886118 8wby:A (3.18) BS01 WM8 N/A N/A Q695T7 39174516
    886119 8wby:D (3.18) BS01 WM8 N/A N/A Q695T7 39174516
    886120 8wbz:A (3.2) BS01 XF0 N/A N/A Q695T7 39174516
    886121 8wbz:D (3.2) BS01 XF0 N/A N/A Q695T7 39174516
    886122 8wc3:R (3.0) BS01 UJL ? GO:0001594 ... Q923Y8 37963465
    886123 8wc4:R (3.1) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    886124 8wc6:R (3.2) BS01 PEA ? GO:0001594 ... Q923Y8 37963465
    886125 8wc7:R (3.1) BS01 VMK ? GO:0001594 ... Q923Y8 37963465
    886126 8wc8:R (2.9) BS01 VMT ? GO:0001594 ... Q96RJ0 37963465
    886127 8wc9:R (3.2) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    886128 8wca:R (3.48) BS01 PEA ? GO:0001594 ... Q96RJ0 37963465
    886129 8wce:A (3.09) BS01 rna N/A N/A N/A 38661236
    886130 8wce:A (3.09) BS02 rna N/A N/A N/A 38661236
    886131 8wce:A (3.09) BS03 MG N/A N/A N/A 38661236
    886132 8wcf:A (1.3) BS01 NAD N/A N/A A0A4Y8A290 N/A
    886133 8wch:A (1.519) BS01 PCA N/A N/A Q4FMW4 39261732
    886134 8wch:B (1.519) BS01 PCA N/A N/A Q4FMW4 39261732
    886135 8wck:1 (2.71) BS01 A86 N/A N/A A0A679BXP6 39030906
    886136 8wck:1 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    886137 8wck:1 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    886138 8wck:1 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    886139 8wck:1 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    886140 8wck:1 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    886141 8wck:1 (2.71) BS07 CLA N/A N/A A0A679BXP6 39030906
    886142 8wck:1 (2.71) BS08 KC2 N/A N/A A0A679BXP6 39030906
    886143 8wck:1 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    886144 8wck:1 (2.71) BS10 KC2 N/A N/A A0A679BXP6 39030906
    886145 8wck:1 (2.71) BS11 KC1 N/A N/A A0A679BXP6 39030906
    886146 8wck:1 (2.71) BS12 CLA N/A N/A A0A679BXP6 39030906
    886147 8wck:1 (2.71) BS13 KC1 N/A N/A A0A679BXP6 39030906
    886148 8wck:1 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    886149 8wck:1 (2.71) BS15 CLA N/A N/A A0A679BXP6 39030906
    886150 8wck:1 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    886151 8wck:1 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    886152 8wck:2 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    886153 8wck:2 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    886154 8wck:2 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    886155 8wck:2 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    886156 8wck:2 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    886157 8wck:2 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    886158 8wck:2 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    886159 8wck:2 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    886160 8wck:2 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    886161 8wck:2 (2.71) BS10 KC2 N/A N/A A0A679BXP6 39030906
    886162 8wck:2 (2.71) BS11 CLA N/A N/A A0A679BXP6 39030906
    886163 8wck:2 (2.71) BS12 KC2 N/A N/A A0A679BXP6 39030906
    886164 8wck:2 (2.71) BS13 KC1 N/A N/A A0A679BXP6 39030906
    886165 8wck:2 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    886166 8wck:2 (2.71) BS15 KC1 N/A N/A A0A679BXP6 39030906
    886167 8wck:2 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    886168 8wck:2 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    886169 8wck:3 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    886170 8wck:3 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    886171 8wck:3 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    886172 8wck:3 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    886173 8wck:3 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    886174 8wck:3 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    886175 8wck:3 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    886176 8wck:3 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    886177 8wck:3 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    886178 8wck:3 (2.71) BS10 KC2 N/A N/A A0A679BXP6 39030906
    886179 8wck:3 (2.71) BS11 CLA N/A N/A A0A679BXP6 39030906
    886180 8wck:3 (2.71) BS12 KC2 N/A N/A A0A679BXP6 39030906
    886181 8wck:3 (2.71) BS13 KC1 N/A N/A A0A679BXP6 39030906
    886182 8wck:3 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    886183 8wck:3 (2.71) BS15 KC1 N/A N/A A0A679BXP6 39030906
    886184 8wck:3 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    886185 8wck:3 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    886186 8wck:4 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    886187 8wck:4 (2.71) BS02 CLA N/A N/A A0A679BXP6 39030906
    886188 8wck:4 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    886189 8wck:4 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    886190 8wck:4 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    886191 8wck:4 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    886192 8wck:4 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    886193 8wck:4 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    886194 8wck:4 (2.71) BS09 KC2 N/A N/A A0A679BXP6 39030906
    886195 8wck:4 (2.71) BS10 CLA N/A N/A A0A679BXP6 39030906
    886196 8wck:4 (2.71) BS11 KC2 N/A N/A A0A679BXP6 39030906
    886197 8wck:4 (2.71) BS12 KC1 N/A N/A A0A679BXP6 39030906
    886198 8wck:4 (2.71) BS13 CLA N/A N/A A0A679BXP6 39030906
    886199 8wck:4 (2.71) BS14 KC1 N/A N/A A0A679BXP6 39030906
    886200 8wck:4 (2.71) BS15 CLA N/A N/A A0A679BXP6 39030906
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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