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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    885801 8wb4:4 (2.47) BS16 II0 N/A N/A N/A 38806516
    885802 8wb4:4 (2.47) BS17 IHT N/A N/A N/A 38806516
    885803 8wb4:4 (2.47) BS18 II0 N/A N/A N/A 38806516
    885804 8wb4:4 (2.47) BS19 II0 N/A N/A N/A 38806516
    885805 8wb4:5 (2.47) BS01 CLA N/A N/A N/A 38806516
    885806 8wb4:5 (2.47) BS02 II0 N/A N/A N/A 38806516
    885807 8wb4:5 (2.47) BS03 CLA N/A N/A N/A 38806516
    885808 8wb4:5 (2.47) BS04 CLA N/A N/A N/A 38806516
    885809 8wb4:5 (2.47) BS05 CLA N/A N/A N/A 38806516
    885810 8wb4:5 (2.47) BS06 CLA N/A N/A N/A 38806516
    885811 8wb4:5 (2.47) BS07 CLA N/A N/A N/A 38806516
    885812 8wb4:5 (2.47) BS08 CLA N/A N/A N/A 38806516
    885813 8wb4:5 (2.47) BS09 CLA N/A N/A N/A 38806516
    885814 8wb4:5 (2.47) BS10 CLA N/A N/A N/A 38806516
    885815 8wb4:5 (2.47) BS11 CLA N/A N/A N/A 38806516
    885816 8wb4:5 (2.47) BS12 KC2 N/A N/A N/A 38806516
    885817 8wb4:5 (2.47) BS13 CLA N/A N/A N/A 38806516
    885818 8wb4:5 (2.47) BS14 CLA N/A N/A N/A 38806516
    885819 8wb4:5 (2.47) BS15 II0 N/A N/A N/A 38806516
    885820 8wb4:5 (2.47) BS16 II0 N/A N/A N/A 38806516
    885821 8wb4:5 (2.47) BS17 II0 N/A N/A N/A 38806516
    885822 8wb4:5 (2.47) BS18 IHT N/A N/A N/A 38806516
    885823 8wb4:5 (2.47) BS19 II0 N/A N/A N/A 38806516
    885824 8wb4:5 (2.47) BS20 CLA N/A N/A N/A 38806516
    885825 8wb4:6 (2.47) BS01 II0 N/A N/A N/A 38806516
    885826 8wb4:6 (2.47) BS02 CLA N/A N/A N/A 38806516
    885827 8wb4:6 (2.47) BS03 CLA N/A N/A N/A 38806516
    885828 8wb4:6 (2.47) BS04 CLA N/A N/A N/A 38806516
    885829 8wb4:6 (2.47) BS05 CLA N/A N/A N/A 38806516
    885830 8wb4:6 (2.47) BS06 KC2 N/A N/A N/A 38806516
    885831 8wb4:6 (2.47) BS07 CLA N/A N/A N/A 38806516
    885832 8wb4:6 (2.47) BS08 CLA N/A N/A N/A 38806516
    885833 8wb4:6 (2.47) BS09 CLA N/A N/A N/A 38806516
    885834 8wb4:6 (2.47) BS10 CLA N/A N/A N/A 38806516
    885835 8wb4:6 (2.47) BS11 II0 N/A N/A N/A 38806516
    885836 8wb4:6 (2.47) BS12 II3 N/A N/A N/A 38806516
    885837 8wb4:6 (2.47) BS13 II0 N/A N/A N/A 38806516
    885838 8wb4:6 (2.47) BS14 8CT N/A N/A N/A 38806516
    885839 8wb4:7 (2.47) BS01 CLA N/A N/A N/A 38806516
    885840 8wb4:7 (2.47) BS02 CLA N/A N/A N/A 38806516
    885841 8wb4:7 (2.47) BS03 CLA N/A N/A N/A 38806516
    885842 8wb4:7 (2.47) BS04 CLA N/A N/A N/A 38806516
    885843 8wb4:7 (2.47) BS05 CLA N/A N/A N/A 38806516
    885844 8wb4:7 (2.47) BS06 CLA N/A N/A N/A 38806516
    885845 8wb4:7 (2.47) BS07 CLA N/A N/A N/A 38806516
    885846 8wb4:7 (2.47) BS08 CLA N/A N/A N/A 38806516
    885847 8wb4:7 (2.47) BS09 CLA N/A N/A N/A 38806516
    885848 8wb4:7 (2.47) BS10 KC2 N/A N/A N/A 38806516
    885849 8wb4:7 (2.47) BS11 CLA N/A N/A N/A 38806516
    885850 8wb4:7 (2.47) BS12 CLA N/A N/A N/A 38806516
    885851 8wb4:7 (2.47) BS13 CLA N/A N/A N/A 38806516
    885852 8wb4:7 (2.47) BS14 II0 N/A N/A N/A 38806516
    885853 8wb4:7 (2.47) BS15 II3 N/A N/A N/A 38806516
    885854 8wb4:7 (2.47) BS16 II0 N/A N/A N/A 38806516
    885855 8wb4:7 (2.47) BS17 II0 N/A N/A N/A 38806516
    885856 8wb4:7 (2.47) BS18 IHT N/A N/A N/A 38806516
    885857 8wb4:7 (2.47) BS19 II0 N/A N/A N/A 38806516
    885858 8wb4:8 (2.47) BS01 II0 N/A N/A N/A 38806516
    885859 8wb4:8 (2.47) BS02 CLA N/A N/A N/A 38806516
    885860 8wb4:8 (2.47) BS03 CLA N/A N/A N/A 38806516
    885861 8wb4:8 (2.47) BS04 CLA N/A N/A N/A 38806516
    885862 8wb4:8 (2.47) BS05 CLA N/A N/A N/A 38806516
    885863 8wb4:8 (2.47) BS06 CLA N/A N/A N/A 38806516
    885864 8wb4:8 (2.47) BS07 CLA N/A N/A N/A 38806516
    885865 8wb4:8 (2.47) BS08 CLA N/A N/A N/A 38806516
    885866 8wb4:8 (2.47) BS09 CLA N/A N/A N/A 38806516
    885867 8wb4:8 (2.47) BS10 KC2 N/A N/A N/A 38806516
    885868 8wb4:8 (2.47) BS11 CLA N/A N/A N/A 38806516
    885869 8wb4:8 (2.47) BS12 CLA N/A N/A N/A 38806516
    885870 8wb4:8 (2.47) BS13 II0 N/A N/A N/A 38806516
    885871 8wb4:8 (2.47) BS14 II0 N/A N/A N/A 38806516
    885872 8wb4:8 (2.47) BS15 II0 N/A N/A N/A 38806516
    885873 8wb4:8 (2.47) BS16 IHT N/A N/A N/A 38806516
    885874 8wb4:8 (2.47) BS17 II0 N/A N/A N/A 38806516
    885875 8wb4:9 (2.47) BS01 CLA N/A N/A N/A 38806516
    885876 8wb4:9 (2.47) BS02 II0 N/A N/A N/A 38806516
    885877 8wb4:9 (2.47) BS03 II0 N/A N/A N/A 38806516
    885878 8wb4:9 (2.47) BS04 CLA N/A N/A N/A 38806516
    885879 8wb4:9 (2.47) BS05 CLA N/A N/A N/A 38806516
    885880 8wb4:9 (2.47) BS06 CLA N/A N/A N/A 38806516
    885881 8wb4:9 (2.47) BS07 CLA N/A N/A N/A 38806516
    885882 8wb4:9 (2.47) BS08 CLA N/A N/A N/A 38806516
    885883 8wb4:9 (2.47) BS09 CLA N/A N/A N/A 38806516
    885884 8wb4:9 (2.47) BS10 CLA N/A N/A N/A 38806516
    885885 8wb4:9 (2.47) BS11 CLA N/A N/A N/A 38806516
    885886 8wb4:9 (2.47) BS12 CLA N/A N/A N/A 38806516
    885887 8wb4:9 (2.47) BS13 CLA N/A N/A N/A 38806516
    885888 8wb4:9 (2.47) BS14 II0 N/A N/A N/A 38806516
    885889 8wb4:9 (2.47) BS15 II0 N/A N/A N/A 38806516
    885890 8wb4:9 (2.47) BS16 II0 N/A N/A N/A 38806516
    885891 8wb4:9 (2.47) BS17 8CT N/A N/A N/A 38806516
    885892 8wb4:A (2.47) BS01 peptide 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885893 8wb4:A (2.47) BS02 OEX 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885894 8wb4:A (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885895 8wb4:A (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885896 8wb4:A (2.47) BS05 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885897 8wb4:A (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885898 8wb4:A (2.47) BS07 8CT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885899 8wb4:A (2.47) BS08 BCT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885900 8wb4:A (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885901 8wb4:A (2.47) BS10 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885902 8wb4:A (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885903 8wb4:A (2.47) BS12 FE2 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885904 8wb4:A (2.47) BS13 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885905 8wb4:B (2.47) BS01 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885906 8wb4:B (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885907 8wb4:B (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885908 8wb4:B (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885909 8wb4:B (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885910 8wb4:B (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885911 8wb4:B (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885912 8wb4:B (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885913 8wb4:B (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885914 8wb4:B (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885915 8wb4:B (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885916 8wb4:B (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885917 8wb4:B (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885918 8wb4:B (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885919 8wb4:B (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885920 8wb4:B (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    885921 8wb4:B (2.47) BS17 8CT ? GO:0009523 ... A0A222AIE3 38806516
    885922 8wb4:B (2.47) BS18 8CT ? GO:0009523 ... A0A222AIE3 38806516
    885923 8wb4:B (2.47) BS19 8CT ? GO:0009523 ... A0A222AIE3 38806516
    885924 8wb4:C (2.47) BS01 OEX ? GO:0005737 ... A0A222AI36 38806516
    885925 8wb4:C (2.47) BS02 8CT ? GO:0005737 ... A0A222AI36 38806516
    885926 8wb4:C (2.47) BS03 8CT ? GO:0005737 ... A0A222AI36 38806516
    885927 8wb4:C (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    885928 8wb4:C (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    885929 8wb4:C (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    885930 8wb4:C (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    885931 8wb4:C (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    885932 8wb4:C (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    885933 8wb4:C (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    885934 8wb4:C (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    885935 8wb4:C (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516
    885936 8wb4:C (2.47) BS13 CLA ? GO:0005737 ... A0A222AI36 38806516
    885937 8wb4:C (2.47) BS14 CLA ? GO:0005737 ... A0A222AI36 38806516
    885938 8wb4:C (2.47) BS15 CLA ? GO:0005737 ... A0A222AI36 38806516
    885939 8wb4:C (2.47) BS16 CLA ? GO:0005737 ... A0A222AI36 38806516
    885940 8wb4:C (2.47) BS17 8CT ? GO:0005737 ... A0A222AI36 38806516
    885941 8wb4:D (2.47) BS01 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885942 8wb4:D (2.47) BS02 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885943 8wb4:D (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885944 8wb4:D (2.47) BS04 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885945 8wb4:D (2.47) BS05 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885946 8wb4:D (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885947 8wb4:D (2.47) BS07 FE2 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885948 8wb4:D (2.47) BS08 8CT 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885949 8wb4:D (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    885950 8wb4:E (2.47) BS01 peptide ? GO:0005506 ... A0A222AI74 38806516
    885951 8wb4:E (2.47) BS02 HEM ? GO:0005506 ... A0A222AI74 38806516
    885952 8wb4:F (2.47) BS01 peptide ? GO:0005506 ... A0A222AI51 38806516
    885953 8wb4:F (2.47) BS02 HEM ? GO:0005506 ... A0A222AI51 38806516
    885954 8wb4:G (2.47) BS01 CLA N/A N/A N/A 38806516
    885955 8wb4:H (2.47) BS01 8CT ? GO:0009523 ... A0A222AIE4 38806516
    885956 8wb4:H (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE4 38806516
    885957 8wb4:H (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE4 38806516
    885958 8wb4:H (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE4 38806516
    885959 8wb4:I (2.47) BS01 CLA ? GO:0005737 ... A0A222AI80 38806516
    885960 8wb4:I (2.47) BS02 CLA ? GO:0005737 ... A0A222AI80 38806516
    885961 8wb4:I (2.47) BS03 8CT ? GO:0005737 ... A0A222AI80 38806516
    885962 8wb4:K (2.47) BS01 8CT ? GO:0005737 ... A0A222AIA0 38806516
    885963 8wb4:K (2.47) BS02 8CT ? GO:0005737 ... A0A222AIA0 38806516
    885964 8wb4:K (2.47) BS03 CLA ? GO:0005737 ... A0A222AIA0 38806516
    885965 8wb4:K (2.47) BS04 CLA ? GO:0005737 ... A0A222AIA0 38806516
    885966 8wb4:M (2.47) BS01 8CT ? N/A L1IFP3 38806516
    885967 8wb4:P (2.47) BS01 CLA N/A N/A N/A 38806516
    885968 8wb4:P (2.47) BS02 CLA N/A N/A N/A 38806516
    885969 8wb4:P (2.47) BS03 CLA N/A N/A N/A 38806516
    885970 8wb4:P (2.47) BS04 CLA N/A N/A N/A 38806516
    885971 8wb4:P (2.47) BS05 KC2 N/A N/A N/A 38806516
    885972 8wb4:P (2.47) BS06 CLA N/A N/A N/A 38806516
    885973 8wb4:P (2.47) BS07 CLA N/A N/A N/A 38806516
    885974 8wb4:P (2.47) BS08 CLA N/A N/A N/A 38806516
    885975 8wb4:P (2.47) BS09 CLA N/A N/A N/A 38806516
    885976 8wb4:P (2.47) BS10 II0 N/A N/A N/A 38806516
    885977 8wb4:P (2.47) BS11 II3 N/A N/A N/A 38806516
    885978 8wb4:P (2.47) BS12 II0 N/A N/A N/A 38806516
    885979 8wb4:P (2.47) BS13 8CT N/A N/A N/A 38806516
    885980 8wb4:P (2.47) BS14 II0 N/A N/A N/A 38806516
    885981 8wb4:S (2.47) BS01 peptide N/A N/A N/A 38806516
    885982 8wb4:S (2.47) BS02 CLA N/A N/A N/A 38806516
    885983 8wb4:S (2.47) BS03 CLA N/A N/A N/A 38806516
    885984 8wb4:S (2.47) BS04 CLA N/A N/A N/A 38806516
    885985 8wb4:S (2.47) BS05 CLA N/A N/A N/A 38806516
    885986 8wb4:S (2.47) BS06 CLA N/A N/A N/A 38806516
    885987 8wb4:S (2.47) BS07 CLA N/A N/A N/A 38806516
    885988 8wb4:V (2.47) BS01 HEM ? N/A A0A222AI35 38806516
    885989 8wb4:X (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    885990 8wb4:Y (2.47) BS01 8CT ? GO:0009523 ... A0A222AI69 38806516
    885991 8wb4:Z (2.47) BS01 8CT ? GO:0009523 ... A0A222AI96 38806516
    885992 8wb4:Z (2.47) BS02 KC2 ? GO:0009523 ... A0A222AI96 38806516
    885993 8wb4:a (2.47) BS01 peptide 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885994 8wb4:a (2.47) BS02 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885995 8wb4:a (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885996 8wb4:a (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885997 8wb4:a (2.47) BS05 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885998 8wb4:a (2.47) BS06 BCT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    885999 8wb4:a (2.47) BS07 OEX 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    886000 8wb4:a (2.47) BS08 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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