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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    885601 8wav:o (2.72) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885602 8wav:o (2.72) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885603 8wav:o (2.72) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885604 8wav:o (2.72) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885605 8wav:o (2.72) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885606 8wav:o (2.72) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885607 8wav:o (2.72) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885608 8wav:o (2.72) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885609 8wav:p (2.72) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885610 8wav:p (2.72) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885611 8wav:p (2.72) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885612 8wav:p (2.72) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885613 8wav:q (2.72) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885614 8wav:s (2.72) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885615 8wav:w (2.72) BS01 ZN ? GO:0000428 ... P60899 38127763
    885616 8wav:w (2.72) BS02 ZN ? GO:0000428 ... P60899 38127763
    885617 8wav:x (2.72) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885618 8wav:z (2.72) BS01 ZN ? GO:0003677 ... A0A8D0JYF1 38127763
    885619 8waw:o (3.02) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885620 8waw:o (3.02) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885621 8waw:o (3.02) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885622 8waw:o (3.02) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885623 8waw:o (3.02) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885624 8waw:o (3.02) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885625 8waw:o (3.02) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885626 8waw:o (3.02) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885627 8waw:p (3.02) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885628 8waw:p (3.02) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885629 8waw:p (3.02) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885630 8waw:p (3.02) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885631 8waw:q (3.02) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885632 8waw:s (3.02) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885633 8waw:w (3.02) BS01 ZN ? GO:0000428 ... P60899 38127763
    885634 8waw:w (3.02) BS02 ZN ? GO:0000428 ... P60899 38127763
    885635 8waw:x (3.02) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885636 8waw:z (3.02) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885637 8wax:o (2.75) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885638 8wax:o (2.75) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885639 8wax:o (2.75) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885640 8wax:o (2.75) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885641 8wax:o (2.75) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885642 8wax:o (2.75) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885643 8wax:o (2.75) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885644 8wax:o (2.75) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885645 8wax:p (2.75) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885646 8wax:p (2.75) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885647 8wax:p (2.75) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885648 8wax:p (2.75) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885649 8wax:q (2.75) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885650 8wax:s (2.75) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885651 8wax:w (2.75) BS01 ZN ? GO:0000428 ... P60899 38127763
    885652 8wax:w (2.75) BS02 ZN ? GO:0000428 ... P60899 38127763
    885653 8wax:x (2.75) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885654 8wax:z (2.75) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885655 8way:o (2.85) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885656 8way:o (2.85) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885657 8way:o (2.85) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885658 8way:o (2.85) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885659 8way:o (2.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885660 8way:o (2.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885661 8way:o (2.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885662 8way:o (2.85) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885663 8way:p (2.85) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885664 8way:p (2.85) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885665 8way:p (2.85) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885666 8way:p (2.85) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885667 8way:q (2.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885668 8way:s (2.85) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885669 8way:w (2.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    885670 8way:w (2.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    885671 8way:x (2.85) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885672 8way:z (2.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885673 8waz:o (2.76) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885674 8waz:o (2.76) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885675 8waz:o (2.76) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885676 8waz:o (2.76) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885677 8waz:o (2.76) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885678 8waz:o (2.76) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885679 8waz:o (2.76) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885680 8waz:o (2.76) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885681 8waz:p (2.76) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885682 8waz:p (2.76) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885683 8waz:p (2.76) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885684 8waz:p (2.76) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885685 8waz:q (2.76) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885686 8waz:s (2.76) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885687 8waz:w (2.76) BS01 ZN ? GO:0000428 ... P60899 38127763
    885688 8waz:w (2.76) BS02 ZN ? GO:0000428 ... P60899 38127763
    885689 8waz:x (2.76) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885690 8waz:z (2.76) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885691 8wb0:o (2.94) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885692 8wb0:o (2.94) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885693 8wb0:o (2.94) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885694 8wb0:o (2.94) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885695 8wb0:o (2.94) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885696 8wb0:o (2.94) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885697 8wb0:o (2.94) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885698 8wb0:o (2.94) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885699 8wb0:p (2.94) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885700 8wb0:p (2.94) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885701 8wb0:p (2.94) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885702 8wb0:p (2.94) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885703 8wb0:q (2.94) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885704 8wb0:s (2.94) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885705 8wb0:w (2.94) BS01 ZN ? GO:0000428 ... P60899 38127763
    885706 8wb0:w (2.94) BS02 ZN ? GO:0000428 ... P60899 38127763
    885707 8wb0:x (2.94) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885708 8wb0:z (2.94) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885709 8wb1:A (1.72) BS01 GDP N/A N/A H2Q5M0 N/A
    885710 8wb1:A (1.72) BS02 W3T N/A N/A H2Q5M0 N/A
    885711 8wb2:A (1.9) BS01 HEM ? GO:0000325 ... Q9FGT8 38103756
    885712 8wb3:A (2.49) BS01 FE N/A N/A P02794 N/A
    885713 8wb3:A (2.49) BS02 FE N/A N/A P02794 N/A
    885714 8wb3:A (2.49) BS03 CA N/A N/A P02794 N/A
    885715 8wb4:0 (2.47) BS01 CLA N/A N/A N/A 38806516
    885716 8wb4:0 (2.47) BS02 CLA N/A N/A N/A 38806516
    885717 8wb4:0 (2.47) BS03 CLA N/A N/A N/A 38806516
    885718 8wb4:0 (2.47) BS04 CLA N/A N/A N/A 38806516
    885719 8wb4:0 (2.47) BS05 CLA N/A N/A N/A 38806516
    885720 8wb4:0 (2.47) BS06 CLA N/A N/A N/A 38806516
    885721 8wb4:0 (2.47) BS07 CLA N/A N/A N/A 38806516
    885722 8wb4:0 (2.47) BS08 CLA N/A N/A N/A 38806516
    885723 8wb4:0 (2.47) BS09 CLA N/A N/A N/A 38806516
    885724 8wb4:0 (2.47) BS10 KC2 N/A N/A N/A 38806516
    885725 8wb4:0 (2.47) BS11 CLA N/A N/A N/A 38806516
    885726 8wb4:0 (2.47) BS12 CLA N/A N/A N/A 38806516
    885727 8wb4:0 (2.47) BS13 CLA N/A N/A N/A 38806516
    885728 8wb4:0 (2.47) BS14 IHT N/A N/A N/A 38806516
    885729 8wb4:0 (2.47) BS15 II0 N/A N/A N/A 38806516
    885730 8wb4:0 (2.47) BS16 II0 N/A N/A N/A 38806516
    885731 8wb4:0 (2.47) BS17 II0 N/A N/A N/A 38806516
    885732 8wb4:0 (2.47) BS18 IHT N/A N/A N/A 38806516
    885733 8wb4:0 (2.47) BS19 II0 N/A N/A N/A 38806516
    885734 8wb4:1 (2.47) BS01 CLA N/A N/A N/A 38806516
    885735 8wb4:1 (2.47) BS02 CLA N/A N/A N/A 38806516
    885736 8wb4:1 (2.47) BS03 CLA N/A N/A N/A 38806516
    885737 8wb4:1 (2.47) BS04 CLA N/A N/A N/A 38806516
    885738 8wb4:1 (2.47) BS05 CLA N/A N/A N/A 38806516
    885739 8wb4:1 (2.47) BS06 CLA N/A N/A N/A 38806516
    885740 8wb4:1 (2.47) BS07 CLA N/A N/A N/A 38806516
    885741 8wb4:1 (2.47) BS08 CLA N/A N/A N/A 38806516
    885742 8wb4:1 (2.47) BS09 CLA N/A N/A N/A 38806516
    885743 8wb4:1 (2.47) BS10 KC2 N/A N/A N/A 38806516
    885744 8wb4:1 (2.47) BS11 CLA N/A N/A N/A 38806516
    885745 8wb4:1 (2.47) BS12 CLA N/A N/A N/A 38806516
    885746 8wb4:1 (2.47) BS13 CLA N/A N/A N/A 38806516
    885747 8wb4:1 (2.47) BS14 II0 N/A N/A N/A 38806516
    885748 8wb4:1 (2.47) BS15 II3 N/A N/A N/A 38806516
    885749 8wb4:1 (2.47) BS16 II0 N/A N/A N/A 38806516
    885750 8wb4:1 (2.47) BS17 II0 N/A N/A N/A 38806516
    885751 8wb4:1 (2.47) BS18 IHT N/A N/A N/A 38806516
    885752 8wb4:1 (2.47) BS19 II0 N/A N/A N/A 38806516
    885753 8wb4:2 (2.47) BS01 II0 N/A N/A N/A 38806516
    885754 8wb4:2 (2.47) BS02 CLA N/A N/A N/A 38806516
    885755 8wb4:2 (2.47) BS03 CLA N/A N/A N/A 38806516
    885756 8wb4:2 (2.47) BS04 CLA N/A N/A N/A 38806516
    885757 8wb4:2 (2.47) BS05 CLA N/A N/A N/A 38806516
    885758 8wb4:2 (2.47) BS06 CLA N/A N/A N/A 38806516
    885759 8wb4:2 (2.47) BS07 CLA N/A N/A N/A 38806516
    885760 8wb4:2 (2.47) BS08 CLA N/A N/A N/A 38806516
    885761 8wb4:2 (2.47) BS09 CLA N/A N/A N/A 38806516
    885762 8wb4:2 (2.47) BS10 KC2 N/A N/A N/A 38806516
    885763 8wb4:2 (2.47) BS11 CLA N/A N/A N/A 38806516
    885764 8wb4:2 (2.47) BS12 CLA N/A N/A N/A 38806516
    885765 8wb4:2 (2.47) BS13 II0 N/A N/A N/A 38806516
    885766 8wb4:2 (2.47) BS14 II0 N/A N/A N/A 38806516
    885767 8wb4:2 (2.47) BS15 II0 N/A N/A N/A 38806516
    885768 8wb4:2 (2.47) BS16 IHT N/A N/A N/A 38806516
    885769 8wb4:2 (2.47) BS17 II0 N/A N/A N/A 38806516
    885770 8wb4:3 (2.47) BS01 CLA N/A N/A N/A 38806516
    885771 8wb4:3 (2.47) BS02 II0 N/A N/A N/A 38806516
    885772 8wb4:3 (2.47) BS03 CLA N/A N/A N/A 38806516
    885773 8wb4:3 (2.47) BS04 CLA N/A N/A N/A 38806516
    885774 8wb4:3 (2.47) BS05 CLA N/A N/A N/A 38806516
    885775 8wb4:3 (2.47) BS06 CLA N/A N/A N/A 38806516
    885776 8wb4:3 (2.47) BS07 CLA N/A N/A N/A 38806516
    885777 8wb4:3 (2.47) BS08 CLA N/A N/A N/A 38806516
    885778 8wb4:3 (2.47) BS09 CLA N/A N/A N/A 38806516
    885779 8wb4:3 (2.47) BS10 CLA N/A N/A N/A 38806516
    885780 8wb4:3 (2.47) BS11 CLA N/A N/A N/A 38806516
    885781 8wb4:3 (2.47) BS12 CLA N/A N/A N/A 38806516
    885782 8wb4:3 (2.47) BS13 II0 N/A N/A N/A 38806516
    885783 8wb4:3 (2.47) BS14 II0 N/A N/A N/A 38806516
    885784 8wb4:3 (2.47) BS15 II0 N/A N/A N/A 38806516
    885785 8wb4:3 (2.47) BS16 8CT N/A N/A N/A 38806516
    885786 8wb4:4 (2.47) BS01 CLA N/A N/A N/A 38806516
    885787 8wb4:4 (2.47) BS02 CLA N/A N/A N/A 38806516
    885788 8wb4:4 (2.47) BS03 CLA N/A N/A N/A 38806516
    885789 8wb4:4 (2.47) BS04 CLA N/A N/A N/A 38806516
    885790 8wb4:4 (2.47) BS05 CLA N/A N/A N/A 38806516
    885791 8wb4:4 (2.47) BS06 CLA N/A N/A N/A 38806516
    885792 8wb4:4 (2.47) BS07 CLA N/A N/A N/A 38806516
    885793 8wb4:4 (2.47) BS08 CLA N/A N/A N/A 38806516
    885794 8wb4:4 (2.47) BS09 CLA N/A N/A N/A 38806516
    885795 8wb4:4 (2.47) BS10 KC2 N/A N/A N/A 38806516
    885796 8wb4:4 (2.47) BS11 CLA N/A N/A N/A 38806516
    885797 8wb4:4 (2.47) BS12 CLA N/A N/A N/A 38806516
    885798 8wb4:4 (2.47) BS13 CLA N/A N/A N/A 38806516
    885799 8wb4:4 (2.47) BS14 IHT N/A N/A N/A 38806516
    885800 8wb4:4 (2.47) BS15 II0 N/A N/A N/A 38806516
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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