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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    885401 8wao:3 (6.4) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885402 8wao:3 (6.4) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885403 8wao:6 (6.4) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885404 8wao:6 (6.4) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885405 8wao:7 (6.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885406 8wao:P (6.4) BS01 dna ? GO:0000785 ... P20226 38127763
    885407 8wao:P (6.4) BS02 dna ? GO:0000785 ... P20226 38127763
    885408 8wao:Q (6.4) BS01 dna ? GO:0000979 ... P52655 38127763
    885409 8wao:R (6.4) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885410 8wao:R (6.4) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885411 8wao:R (6.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885412 8wao:T (6.4) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885413 8wao:U (6.4) BS01 ZN ? GO:0001113 ... P29083 38127763
    885414 8wao:o (6.4) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885415 8wao:o (6.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885416 8wao:o (6.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885417 8wao:o (6.4) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885418 8wao:o (6.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885419 8wao:o (6.4) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885420 8wao:o (6.4) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885421 8wao:p (6.4) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885422 8wao:p (6.4) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885423 8wao:p (6.4) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885424 8wao:p (6.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885425 8wao:q (6.4) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885426 8wao:s (6.4) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885427 8wao:w (6.4) BS01 ZN ? GO:0000428 ... P60899 38127763
    885428 8wao:w (6.4) BS02 ZN ? GO:0000428 ... P60899 38127763
    885429 8wao:x (6.4) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885430 8wao:z (6.4) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885431 8wap:0 (5.85) BS01 ZN ? GO:0000082 ... P51948 38127763
    885432 8wap:2 (5.85) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885433 8wap:2 (5.85) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885434 8wap:2 (5.85) BS03 ZN ? GO:0000438 ... Q13888 38127763
    885435 8wap:3 (5.85) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885436 8wap:3 (5.85) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885437 8wap:6 (5.85) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885438 8wap:6 (5.85) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885439 8wap:7 (5.85) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885440 8wap:P (5.85) BS01 dna ? GO:0000785 ... P20226 38127763
    885441 8wap:P (5.85) BS02 dna ? GO:0000785 ... P20226 38127763
    885442 8wap:Q (5.85) BS01 dna ? GO:0000979 ... P52655 38127763
    885443 8wap:R (5.85) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885444 8wap:R (5.85) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885445 8wap:R (5.85) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885446 8wap:T (5.85) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885447 8wap:U (5.85) BS01 ZN ? GO:0001113 ... P29083 38127763
    885448 8wap:o (5.85) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885449 8wap:o (5.85) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885450 8wap:o (5.85) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885451 8wap:o (5.85) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885452 8wap:o (5.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885453 8wap:o (5.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885454 8wap:o (5.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885455 8wap:p (5.85) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885456 8wap:p (5.85) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885457 8wap:p (5.85) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885458 8wap:p (5.85) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885459 8wap:q (5.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885460 8wap:s (5.85) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885461 8wap:w (5.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    885462 8wap:w (5.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    885463 8wap:x (5.85) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885464 8wap:z (5.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885465 8waq:0 (6.29) BS01 ZN ? GO:0000082 ... P51948 38127763
    885466 8waq:2 (6.29) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885467 8waq:2 (6.29) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885468 8waq:2 (6.29) BS03 ZN ? GO:0000438 ... Q13888 38127763
    885469 8waq:3 (6.29) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885470 8waq:3 (6.29) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885471 8waq:6 (6.29) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885472 8waq:6 (6.29) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885473 8waq:7 (6.29) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885474 8waq:P (6.29) BS01 dna ? GO:0000785 ... P20226 38127763
    885475 8waq:P (6.29) BS02 dna ? GO:0000785 ... P20226 38127763
    885476 8waq:Q (6.29) BS01 dna ? GO:0000979 ... P52655 38127763
    885477 8waq:R (6.29) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885478 8waq:R (6.29) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885479 8waq:R (6.29) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885480 8waq:T (6.29) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885481 8waq:U (6.29) BS01 ZN ? GO:0001113 ... P29083 38127763
    885482 8waq:o (6.29) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885483 8waq:o (6.29) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885484 8waq:o (6.29) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885485 8waq:o (6.29) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885486 8waq:o (6.29) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885487 8waq:o (6.29) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885488 8waq:o (6.29) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885489 8waq:p (6.29) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885490 8waq:p (6.29) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885491 8waq:p (6.29) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885492 8waq:p (6.29) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885493 8waq:q (6.29) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885494 8waq:s (6.29) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885495 8waq:w (6.29) BS01 ZN ? GO:0000428 ... P60899 38127763
    885496 8waq:w (6.29) BS02 ZN ? GO:0000428 ... P60899 38127763
    885497 8waq:x (6.29) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885498 8waq:z (6.29) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885499 8war:0 (7.2) BS01 ZN ? GO:0000082 ... P51948 38127763
    885500 8war:2 (7.2) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885501 8war:2 (7.2) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885502 8war:2 (7.2) BS03 ZN ? GO:0000438 ... Q13888 38127763
    885503 8war:3 (7.2) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885504 8war:3 (7.2) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885505 8war:6 (7.2) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885506 8war:6 (7.2) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885507 8war:7 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885508 8war:P (7.2) BS01 dna ? GO:0000785 ... P20226 38127763
    885509 8war:P (7.2) BS02 dna ? GO:0000785 ... P20226 38127763
    885510 8war:Q (7.2) BS01 dna ? GO:0000979 ... P52655 38127763
    885511 8war:R (7.2) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885512 8war:R (7.2) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885513 8war:R (7.2) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885514 8war:T (7.2) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885515 8war:U (7.2) BS01 ZN ? GO:0001113 ... P29083 38127763
    885516 8war:o (7.2) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885517 8war:o (7.2) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885518 8war:o (7.2) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885519 8war:o (7.2) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885520 8war:o (7.2) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885521 8war:o (7.2) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885522 8war:o (7.2) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885523 8war:p (7.2) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885524 8war:p (7.2) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885525 8war:p (7.2) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885526 8war:p (7.2) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885527 8war:q (7.2) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885528 8war:s (7.2) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885529 8war:w (7.2) BS01 ZN ? GO:0000428 ... P60899 38127763
    885530 8war:w (7.2) BS02 ZN ? GO:0000428 ... P60899 38127763
    885531 8war:x (7.2) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885532 8war:z (7.2) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885533 8was:0 (6.13) BS01 ZN ? GO:0000082 ... P51948 38127763
    885534 8was:2 (6.13) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885535 8was:2 (6.13) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885536 8was:2 (6.13) BS03 ZN ? GO:0000438 ... Q13888 38127763
    885537 8was:3 (6.13) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885538 8was:3 (6.13) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885539 8was:6 (6.13) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885540 8was:6 (6.13) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885541 8was:7 (6.13) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885542 8was:P (6.13) BS01 dna ? GO:0000785 ... P20226 38127763
    885543 8was:P (6.13) BS02 dna ? GO:0000785 ... P20226 38127763
    885544 8was:Q (6.13) BS01 dna ? GO:0000979 ... P52655 38127763
    885545 8was:R (6.13) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885546 8was:R (6.13) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885547 8was:R (6.13) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885548 8was:T (6.13) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885549 8was:U (6.13) BS01 ZN ? GO:0001113 ... P29083 38127763
    885550 8was:o (6.13) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885551 8was:o (6.13) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885552 8was:o (6.13) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885553 8was:o (6.13) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885554 8was:o (6.13) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885555 8was:o (6.13) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885556 8was:o (6.13) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885557 8was:p (6.13) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885558 8was:p (6.13) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885559 8was:p (6.13) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885560 8was:p (6.13) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885561 8was:q (6.13) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885562 8was:s (6.13) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885563 8was:w (6.13) BS01 ZN ? GO:0000428 ... P60899 38127763
    885564 8was:w (6.13) BS02 ZN ? GO:0000428 ... P60899 38127763
    885565 8was:x (6.13) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885566 8was:z (6.13) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885567 8wat:o (2.82) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885568 8wat:o (2.82) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885569 8wat:o (2.82) BS03 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885570 8wat:o (2.82) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885571 8wat:o (2.82) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885572 8wat:o (2.82) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885573 8wat:o (2.82) BS07 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885574 8wat:p (2.82) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885575 8wat:p (2.82) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885576 8wat:p (2.82) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885577 8wat:p (2.82) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885578 8wat:q (2.82) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885579 8wat:s (2.82) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885580 8wat:w (2.82) BS01 ZN ? GO:0000428 ... P60899 38127763
    885581 8wat:w (2.82) BS02 ZN ? GO:0000428 ... P60899 38127763
    885582 8wat:x (2.82) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885583 8wat:z (2.82) BS01 ZN ? GO:0003677 ... A0A8D0JYF1 38127763
    885584 8wau:o (2.78) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885585 8wau:o (2.78) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885586 8wau:o (2.78) BS03 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885587 8wau:o (2.78) BS04 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885588 8wau:o (2.78) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885589 8wau:o (2.78) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885590 8wau:o (2.78) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885591 8wau:p (2.78) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885592 8wau:p (2.78) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885593 8wau:p (2.78) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885594 8wau:p (2.78) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    885595 8wau:q (2.78) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885596 8wau:s (2.78) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    885597 8wau:w (2.78) BS01 ZN ? GO:0000428 ... P60899 38127763
    885598 8wau:w (2.78) BS02 ZN ? GO:0000428 ... P60899 38127763
    885599 8wau:x (2.78) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    885600 8wau:z (2.78) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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