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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    885201 8wa2:F (3.0) BS14 FUB ? N/A A8J9H7 38552612
    885202 8wa2:F (3.0) BS15 FUB ? N/A A8J9H7 38552612
    885203 8wa2:F (3.0) BS16 FUB ? N/A A8J9H7 38552612
    885204 8wa2:F (3.0) BS17 FUB ? N/A A8J9H7 38552612
    885205 8wa2:F (3.0) BS18 FUB ? N/A A8J9H7 38552612
    885206 8wa2:F (3.0) BS19 FUB ? N/A A8J9H7 38552612
    885207 8wa2:F (3.0) BS20 GZL ? N/A A8J9H7 38552612
    885208 8wa2:F (3.0) BS21 FUB ? N/A A8J9H7 38552612
    885209 8wa2:F (3.0) BS22 FUB ? N/A A8J9H7 38552612
    885210 8wa2:F (3.0) BS23 GZL ? N/A A8J9H7 38552612
    885211 8wa2:F (3.0) BS24 GZL ? N/A A8J9H7 38552612
    885212 8wa2:F (3.0) BS25 FUB ? N/A A8J9H7 38552612
    885213 8wa2:F (3.0) BS26 FUB ? N/A A8J9H7 38552612
    885214 8wa2:F (3.0) BS27 GZL ? N/A A8J9H7 38552612
    885215 8wa2:F (3.0) BS28 FUB ? N/A A8J9H7 38552612
    885216 8wa2:F (3.0) BS29 FUB ? N/A A8J9H7 38552612
    885217 8wa2:F (3.0) BS30 AHR ? N/A A8J9H7 38552612
    885218 8wa2:F (3.0) BS31 BMA ? N/A A8J9H7 38552612
    885219 8wa2:F (3.0) BS32 MAN ? N/A A8J9H7 38552612
    885220 8wa2:F (3.0) BS33 AHR ? N/A A8J9H7 38552612
    885221 8wa2:F (3.0) BS34 CA ? N/A A8J9H7 38552612
    885222 8wa2:F (3.0) BS35 GLA ? N/A A8J9H7 38552612
    885223 8wa2:F (3.0) BS36 GLA ? N/A A8J9H7 38552612
    885224 8wa2:F (3.0) BS37 GLA ? N/A A8J9H7 38552612
    885225 8wa2:F (3.0) BS38 GLA ? N/A A8J9H7 38552612
    885226 8wa2:F (3.0) BS39 GLA ? N/A A8J9H7 38552612
    885227 8wa2:F (3.0) BS40 GLA ? N/A A8J9H7 38552612
    885228 8wa2:F (3.0) BS41 GLA ? N/A A8J9H7 38552612
    885229 8wa2:F (3.0) BS42 GLA ? N/A A8J9H7 38552612
    885230 8wa2:F (3.0) BS43 GLA ? N/A A8J9H7 38552612
    885231 8wa2:F (3.0) BS44 GLA ? N/A A8J9H7 38552612
    885232 8wa2:F (3.0) BS45 GLA ? N/A A8J9H7 38552612
    885233 8wa2:F (3.0) BS46 GLA ? N/A A8J9H7 38552612
    885234 8wa2:G (3.0) BS01 FUB N/A N/A N/A 38552612
    885235 8wa2:G (3.0) BS02 FUB N/A N/A N/A 38552612
    885236 8wa2:G (3.0) BS03 GZL N/A N/A N/A 38552612
    885237 8wa2:G (3.0) BS04 FUB N/A N/A N/A 38552612
    885238 8wa2:G (3.0) BS05 GZL N/A N/A N/A 38552612
    885239 8wa2:G (3.0) BS06 FUB N/A N/A N/A 38552612
    885240 8wa2:G (3.0) BS07 FUB N/A N/A N/A 38552612
    885241 8wa2:G (3.0) BS08 GZL N/A N/A N/A 38552612
    885242 8wa2:G (3.0) BS09 GZL N/A N/A N/A 38552612
    885243 8wa2:G (3.0) BS10 FUB N/A N/A N/A 38552612
    885244 8wa2:G (3.0) BS11 GZL N/A N/A N/A 38552612
    885245 8wa2:G (3.0) BS12 GZL N/A N/A N/A 38552612
    885246 8wa2:G (3.0) BS13 FUB N/A N/A N/A 38552612
    885247 8wa2:G (3.0) BS14 GZL N/A N/A N/A 38552612
    885248 8wa2:G (3.0) BS15 FUB N/A N/A N/A 38552612
    885249 8wa2:G (3.0) BS16 GZL N/A N/A N/A 38552612
    885250 8wa2:G (3.0) BS17 FUB N/A N/A N/A 38552612
    885251 8wa2:H (3.0) BS01 GZL N/A N/A N/A 38552612
    885252 8wa2:H (3.0) BS02 FUB N/A N/A N/A 38552612
    885253 8wa2:H (3.0) BS03 GZL N/A N/A N/A 38552612
    885254 8wa2:H (3.0) BS04 FUB N/A N/A N/A 38552612
    885255 8wa2:H (3.0) BS05 GZL N/A N/A N/A 38552612
    885256 8wa2:H (3.0) BS06 GZL N/A N/A N/A 38552612
    885257 8wa2:H (3.0) BS07 GZL N/A N/A N/A 38552612
    885258 8wa2:I (3.0) BS01 GZL N/A N/A N/A 38552612
    885259 8wa2:I (3.0) BS02 FUB N/A N/A N/A 38552612
    885260 8wa2:I (3.0) BS03 GZL N/A N/A N/A 38552612
    885261 8wa2:I (3.0) BS04 GZL N/A N/A N/A 38552612
    885262 8wa5:A (2.51) BS01 ALF 7.2.2.19 GO:0000166 ... P19156 38072058
    885263 8wa5:A (2.51) BS02 MG 7.2.2.19 GO:0000166 ... P19156 38072058
    885264 8wa5:A (2.51) BS03 CLR 7.2.2.19 GO:0000166 ... P19156 38072058
    885265 8wa7:A (1.63) BS01 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    885266 8wa7:A (1.63) BS02 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    885267 8wa7:A (1.63) BS03 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    885268 8wa7:B (1.63) BS01 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    885269 8wa7:B (1.63) BS02 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    885270 8wa7:B (1.63) BS03 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    885271 8wa8:A (1.48) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    885272 8wa8:A (1.48) BS02 TPP 2.2.1.1 GO:0000287 ... P29401 N/A
    885273 8wa9:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    885274 8wa9:A (1.5) BS02 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885275 8wa9:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885276 8wa9:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885277 8wa9:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    885278 8wa9:B (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885279 8waa:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    885280 8waa:A (1.5) BS02 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    885281 8waa:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885282 8waa:A (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885283 8waa:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885284 8waa:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    885285 8waa:B (1.5) BS03 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    885286 8waa:B (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    885287 8wai:A (1.45) BS01 ZN N/A N/A A0A1D1V463 N/A
    885288 8wai:A (1.45) BS02 ZN N/A N/A A0A1D1V463 N/A
    885289 8wai:B (1.45) BS01 ZN N/A N/A A0A1D1V463 N/A
    885290 8wai:B (1.45) BS02 ZN N/A N/A A0A1D1V463 N/A
    885291 8wak:0 (5.47) BS01 ZN ? GO:0000082 ... P51948 38127763
    885292 8wak:2 (5.47) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885293 8wak:2 (5.47) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885294 8wak:2 (5.47) BS03 ZN ? GO:0000438 ... Q13888 38127763
    885295 8wak:3 (5.47) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885296 8wak:3 (5.47) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885297 8wak:6 (5.47) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885298 8wak:6 (5.47) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885299 8wak:7 (5.47) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885300 8wak:P (5.47) BS01 dna ? GO:0000785 ... P20226 38127763
    885301 8wak:P (5.47) BS02 dna ? GO:0000785 ... P20226 38127763
    885302 8wak:Q (5.47) BS01 dna ? GO:0000979 ... P52655 38127763
    885303 8wak:R (5.47) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885304 8wak:R (5.47) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885305 8wak:R (5.47) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885306 8wak:T (5.47) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885307 8wak:U (5.47) BS01 ZN ? GO:0001113 ... P29083 38127763
    885308 8wak:o (5.47) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885309 8wak:o (5.47) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885310 8wak:o (5.47) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885311 8wak:o (5.47) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885312 8wak:o (5.47) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885313 8wak:o (5.47) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885314 8wak:o (5.47) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885315 8wak:p (5.47) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885316 8wak:p (5.47) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885317 8wak:p (5.47) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885318 8wak:p (5.47) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885319 8wak:q (5.47) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885320 8wak:s (5.47) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885321 8wak:w (5.47) BS01 ZN ? GO:0000428 ... P60899 38127763
    885322 8wak:w (5.47) BS02 ZN ? GO:0000428 ... P60899 38127763
    885323 8wak:x (5.47) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885324 8wak:z (5.47) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885325 8wal:0 (8.52) BS01 ZN ? GO:0000082 ... P51948 38127763
    885326 8wal:2 (8.52) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885327 8wal:2 (8.52) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885328 8wal:2 (8.52) BS03 ZN ? GO:0000438 ... Q13888 38127763
    885329 8wal:3 (8.52) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885330 8wal:3 (8.52) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885331 8wal:6 (8.52) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885332 8wal:6 (8.52) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885333 8wal:7 (8.52) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885334 8wal:P (8.52) BS01 dna ? GO:0000785 ... P20226 38127763
    885335 8wal:P (8.52) BS02 dna ? GO:0000785 ... P20226 38127763
    885336 8wal:Q (8.52) BS01 dna ? GO:0000979 ... P52655 38127763
    885337 8wal:R (8.52) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885338 8wal:R (8.52) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885339 8wal:R (8.52) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885340 8wal:T (8.52) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885341 8wal:U (8.52) BS01 ZN ? GO:0001113 ... P29083 38127763
    885342 8wal:o (8.52) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885343 8wal:o (8.52) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885344 8wal:o (8.52) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885345 8wal:o (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885346 8wal:o (8.52) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885347 8wal:o (8.52) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885348 8wal:p (8.52) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885349 8wal:p (8.52) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885350 8wal:p (8.52) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885351 8wal:p (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885352 8wal:q (8.52) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885353 8wal:s (8.52) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885354 8wal:w (8.52) BS01 ZN ? GO:0000428 ... P60899 38127763
    885355 8wal:w (8.52) BS02 ZN ? GO:0000428 ... P60899 38127763
    885356 8wal:x (8.52) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885357 8wal:z (8.52) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885358 8wam:A (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    885359 8wam:A (3.23) BS02 MG ? GO:0005524 ... Q84TH5 38050355
    885360 8wam:A (3.23) BS03 ATP ? GO:0005524 ... Q84TH5 38050355
    885361 8wam:B (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    885362 8wam:B (3.23) BS02 ATP ? GO:0005524 ... Q84TH5 38050355
    885363 8wam:B (3.23) BS03 MG ? GO:0005524 ... Q84TH5 38050355
    885364 8wan:0 (6.07) BS01 ZN ? GO:0000082 ... P51948 38127763
    885365 8wan:2 (6.07) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885366 8wan:2 (6.07) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885367 8wan:2 (6.07) BS03 ZN ? GO:0000438 ... Q13888 38127763
    885368 8wan:3 (6.07) BS01 ZN ? GO:0000438 ... Q13889 38127763
    885369 8wan:3 (6.07) BS02 ZN ? GO:0000438 ... Q13889 38127763
    885370 8wan:6 (6.07) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885371 8wan:6 (6.07) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    885372 8wan:7 (6.07) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    885373 8wan:P (6.07) BS01 dna ? GO:0000785 ... P20226 38127763
    885374 8wan:P (6.07) BS02 dna ? GO:0000785 ... P20226 38127763
    885375 8wan:Q (6.07) BS01 dna ? GO:0000979 ... P52655 38127763
    885376 8wan:R (6.07) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885377 8wan:R (6.07) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    885378 8wan:R (6.07) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    885379 8wan:T (6.07) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    885380 8wan:U (6.07) BS01 ZN ? GO:0001113 ... P29083 38127763
    885381 8wan:o (6.07) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885382 8wan:o (6.07) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885383 8wan:o (6.07) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885384 8wan:o (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885385 8wan:o (6.07) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885386 8wan:o (6.07) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    885387 8wan:p (6.07) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885388 8wan:p (6.07) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885389 8wan:p (6.07) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885390 8wan:p (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    885391 8wan:q (6.07) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    885392 8wan:s (6.07) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    885393 8wan:w (6.07) BS01 ZN ? GO:0000428 ... P60899 38127763
    885394 8wan:w (6.07) BS02 ZN ? GO:0000428 ... P60899 38127763
    885395 8wan:x (6.07) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    885396 8wan:z (6.07) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    885397 8wao:0 (6.4) BS01 ZN ? GO:0000082 ... P51948 38127763
    885398 8wao:2 (6.4) BS01 ZN ? GO:0000438 ... Q13888 38127763
    885399 8wao:2 (6.4) BS02 ZN ? GO:0000438 ... Q13888 38127763
    885400 8wao:2 (6.4) BS03 ZN ? GO:0000438 ... Q13888 38127763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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