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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    884801 8w8n:C (2.693) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    884802 8w8n:D (2.693) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    884803 8w8n:D (2.693) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    884804 8w8n:D (2.693) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    884805 8w8n:D (2.693) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    884806 8w8n:D (2.693) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    884807 8w8n:D (2.693) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    884808 8w8n:D (2.693) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    884809 8w8n:F (2.693) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    884810 8w8n:F (2.693) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    884811 8w8n:F (2.693) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    884812 8w8o:B (2.512) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    884813 8w8o:C (2.512) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    884814 8w8o:C (2.512) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    884815 8w8o:C (2.512) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    884816 8w8o:D (2.512) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    884817 8w8o:D (2.512) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    884818 8w8o:D (2.512) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    884819 8w8o:D (2.512) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    884820 8w8o:D (2.512) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    884821 8w8o:D (2.512) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    884822 8w8o:D (2.512) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    884823 8w8o:F (2.512) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    884824 8w8o:F (2.512) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    884825 8w8o:F (2.512) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    884826 8w8p:B (3.165) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    884827 8w8p:C (3.165) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    884828 8w8p:C (3.165) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    884829 8w8p:C (3.165) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    884830 8w8p:D (3.165) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    884831 8w8p:D (3.165) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    884832 8w8p:D (3.165) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    884833 8w8p:D (3.165) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    884834 8w8p:D (3.165) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    884835 8w8p:D (3.165) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    884836 8w8p:D (3.165) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    884837 8w8p:D (3.165) BS08 2TM N/A GO:0000287 ... Q8RQE8 38990947
    884838 8w8p:F (3.165) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    884839 8w8p:F (3.165) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    884840 8w8p:F (3.165) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    884841 8w91:b (2.12) BS01 FE N/A N/A A0A173CSP7 N/A
    884842 8w91:b (2.12) BS02 FE N/A N/A A0A173CSP7 N/A
    884843 8w92:A (2.12) BS01 FE N/A N/A P02794 N/A
    884844 8w92:A (2.12) BS02 FE N/A N/A P02794 N/A
    884845 8w93:b (2.09) BS01 FE N/A N/A A0A173CSP7 N/A
    884846 8w93:b (2.09) BS02 FE N/A N/A A0A173CSP7 N/A
    884847 8w94:b (2.3) BS01 FE N/A N/A A0A173CSP7 N/A
    884848 8w94:b (2.3) BS02 FE N/A N/A A0A173CSP7 N/A
    884849 8w94:b (2.3) BS03 FE N/A N/A A0A173CSP7 N/A
    884850 8w95:b (2.03) BS01 FE N/A N/A A0A173CSP7 N/A
    884851 8w95:b (2.03) BS02 FE N/A N/A A0A173CSP7 N/A
    884852 8w95:b (2.03) BS03 FE N/A N/A A0A173CSP7 N/A
    884853 8w95:b (2.03) BS04 OXY N/A N/A A0A173CSP7 N/A
    884854 8w9a:A (2.7) BS01 UEX 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    884855 8w9b:A (3.0) BS01 UJ3 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    884856 8w9c:B (3.3) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    884857 8w9c:E (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884858 8w9c:E (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884859 8w9c:E (3.3) BS03 ZN ? GO:0000118 ... Q04779 38598631
    884860 8w9c:F (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884861 8w9c:F (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884862 8w9d:B (3.9) BS01 peptide 3.5.1.98 GO:0000082 ... P32561 38598631
    884863 8w9d:B (3.9) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    884864 8w9d:E (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884865 8w9d:E (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884866 8w9d:E (3.9) BS03 ZN ? GO:0000118 ... Q04779 38598631
    884867 8w9d:F (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884868 8w9d:F (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884869 8w9d:a (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    884870 8w9d:a (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    884871 8w9d:b (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    884872 8w9d:b (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    884873 8w9d:c (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    884874 8w9d:c (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    884875 8w9d:d (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    884876 8w9d:d (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    884877 8w9d:e (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    884878 8w9d:e (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    884879 8w9d:f (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    884880 8w9d:f (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    884881 8w9d:g (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    884882 8w9d:g (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    884883 8w9d:h (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    884884 8w9d:h (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    884885 8w9e:B (3.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    884886 8w9e:E (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884887 8w9e:E (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884888 8w9e:E (3.6) BS03 ZN ? GO:0000118 ... Q04779 38598631
    884889 8w9e:E (3.6) BS04 ZN ? GO:0000118 ... Q04779 38598631
    884890 8w9e:F (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884891 8w9e:F (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884892 8w9e:a (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    884893 8w9e:a (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    884894 8w9e:b (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    884895 8w9e:b (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    884896 8w9e:c (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    884897 8w9e:c (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    884898 8w9e:d (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    884899 8w9e:d (3.6) BS02 dna ? GO:0000786 ... O60814 38598631
    884900 8w9e:e (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    884901 8w9e:e (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    884902 8w9e:f (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    884903 8w9e:f (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    884904 8w9e:g (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    884905 8w9e:g (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    884906 8w9e:h (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    884907 8w9f:B (4.4) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    884908 8w9f:E (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884909 8w9f:E (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884910 8w9f:E (4.4) BS03 ZN ? GO:0000118 ... Q04779 38598631
    884911 8w9f:F (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    884912 8w9f:F (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    884913 8w9f:G (4.4) BS01 dna ? GO:0000122 ... Q12432 38598631
    884914 8w9f:a (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    884915 8w9f:a (4.4) BS02 dna ? GO:0000786 ... P68431 38598631
    884916 8w9f:b (4.4) BS01 dna ? GO:0000781 ... P62805 38598631
    884917 8w9f:b (4.4) BS02 dna ? GO:0000781 ... P62805 38598631
    884918 8w9f:c (4.4) BS01 dna ? GO:0000786 ... P04908 38598631
    884919 8w9f:c (4.4) BS02 dna ? GO:0000786 ... P04908 38598631
    884920 8w9f:d (4.4) BS01 dna ? GO:0000786 ... O60814 38598631
    884921 8w9f:d (4.4) BS02 dna ? GO:0000786 ... O60814 38598631
    884922 8w9f:e (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    884923 8w9f:e (4.4) BS02 dna ? GO:0000786 ... P68431 38598631
    884924 8w9f:f (4.4) BS01 dna ? GO:0000781 ... P62805 38598631
    884925 8w9f:f (4.4) BS02 dna ? GO:0000781 ... P62805 38598631
    884926 8w9f:g (4.4) BS01 dna ? GO:0000786 ... P04908 38598631
    884927 8w9f:g (4.4) BS02 dna ? GO:0000786 ... P04908 38598631
    884928 8w9f:h (4.4) BS01 dna ? GO:0000786 ... O60814 38598631
    884929 8w9f:h (4.4) BS02 dna ? GO:0000786 ... O60814 38598631
    884930 8w9g:A (2.6) BS01 5PT N/A N/A P03147 N/A
    884931 8w9g:A (2.6) BS02 5PT N/A N/A P03147 N/A
    884932 8w9g:B (2.6) BS01 5PT N/A N/A P03147 N/A
    884933 8w9g:C (2.6) BS01 5PT N/A N/A P03147 N/A
    884934 8w9g:C (2.6) BS02 5PT N/A N/A P03147 N/A
    884935 8w9g:D (2.6) BS01 5PT N/A N/A P03147 N/A
    884936 8w9g:E (2.6) BS01 5PT N/A N/A P03147 N/A
    884937 8w9g:E (2.6) BS02 5PT N/A N/A P03147 N/A
    884938 8w9g:F (2.6) BS01 5PT N/A N/A P03147 N/A
    884939 8w9i:A (2.45) BS01 W2H N/A N/A Q9I502 N/A
    884940 8w9i:A (2.45) BS02 MG N/A N/A Q9I502 N/A
    884941 8w9i:B (2.45) BS01 W2H N/A N/A Q9I502 N/A
    884942 8w9i:B (2.45) BS02 MG N/A N/A Q9I502 N/A
    884943 8w9i:B (2.45) BS03 MG N/A N/A Q9I502 N/A
    884944 8w9m:C (3.1) BS01 ATP ? GO:0005524 ... Q8YZ76 38457518
    884945 8w9m:C (3.1) BS02 MG ? GO:0005524 ... Q8YZ76 38457518
    884946 8w9m:C (3.1) BS03 ATP ? GO:0005524 ... Q8YZ76 38457518
    884947 8w9m:D (3.1) BS01 ATP ? GO:0005524 ... Q8YZ75 38457518
    884948 8w9m:D (3.1) BS02 ATP ? GO:0005524 ... Q8YZ75 38457518
    884949 8w9m:D (3.1) BS03 MG ? GO:0005524 ... Q8YZ75 38457518
    884950 8w9o:A (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    884951 8w9o:A (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    884952 8w9o:B (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    884953 8w9o:B (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    884954 8w9p:R (5.7) BS01 peptide ? N/A B4Y048 38480794
    884955 8w9p:S (5.7) BS01 peptide ? N/A B4Y048 38480794
    884956 8w9p:T (5.7) BS01 peptide ? N/A B4Y048 38480794
    884957 8w9p:U (5.7) BS01 peptide ? N/A B4Y048 38480794
    884958 8w9p:V (5.7) BS01 peptide ? N/A B4Y048 38480794
    884959 8w9p:V (5.7) BS02 peptide ? N/A B4Y048 38480794
    884960 8w9p:W (5.7) BS01 peptide ? N/A B4Y048 38480794
    884961 8w9q:R (5.7) BS01 peptide ? N/A B4Y048 38480794
    884962 8w9q:S (5.7) BS01 peptide ? N/A B4Y048 38480794
    884963 8w9q:S (5.7) BS02 peptide ? N/A B4Y048 38480794
    884964 8w9q:T (5.7) BS01 peptide ? N/A B4Y048 38480794
    884965 8w9u:A (1.85) BS01 SAH N/A N/A O31590 N/A
    884966 8w9u:B (1.85) BS01 SAH N/A N/A O31590 N/A
    884967 8w9v:A (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    884968 8w9v:A (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    884969 8w9v:A (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    884970 8w9v:B (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    884971 8w9v:B (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    884972 8w9v:B (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    884973 8w9w:A (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884974 8w9w:A (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884975 8w9w:B (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884976 8w9w:B (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884977 8w9w:C (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884978 8w9w:C (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884979 8w9w:D (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884980 8w9w:E (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884981 8w9w:F (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884982 8w9w:F (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    884983 8w9z:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    884984 8w9z:C (3.0) BS01 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    884985 8w9z:G (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    884986 8w9z:L (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    884987 8wa0:B (2.7) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    884988 8wa0:B (2.7) BS02 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    884989 8wa0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    884990 8wa0:C (2.7) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    884991 8wa0:C (2.7) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    884992 8wa0:C (2.7) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    884993 8wa0:G (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    884994 8wa0:L (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    884995 8wa1:B (2.8) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    884996 8wa1:B (2.8) BS02 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    884997 8wa1:B (2.8) BS03 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    884998 8wa1:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    884999 8wa1:C (2.8) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    885000 8wa1:C (2.8) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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