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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    884601 8w6v:A (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    884602 8w6v:B (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    884603 8w6x:L (1.04) BS01 NFU 1.12.2.1 GO:0016491 ... P21852 37712026
    884604 8w6x:L (1.04) BS02 MG 1.12.2.1 GO:0016491 ... P21852 37712026
    884605 8w6x:L (1.04) BS03 SF4 1.12.2.1 GO:0016491 ... P21852 37712026
    884606 8w6x:S (1.04) BS01 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    884607 8w6x:S (1.04) BS02 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    884608 8w6x:S (1.04) BS03 F3S 1.12.2.1 GO:0009055 ... P21853 37712026
    884609 8w6y:A (2.502) BS01 FE N/A N/A A0A084EX36 38641862
    884610 8w6y:A (2.502) BS02 FE N/A N/A A0A084EX36 38641862
    884611 8w6y:A (2.502) BS03 FE N/A N/A A0A084EX36 38641862
    884612 8w6z:A (2.2) BS01 peptide N/A N/A N/A N/A
    884613 8w6z:A (2.2) BS02 HEM N/A N/A N/A N/A
    884614 8w6z:A (2.2) BS03 R8L N/A N/A N/A N/A
    884615 8w71:A (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    884616 8w71:A (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    884617 8w71:B (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    884618 8w71:B (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    884619 8w72:A (3.25) BS01 HEM N/A N/A N/A N/A
    884620 8w73:A (2.601) BS01 FE N/A N/A A0A084EX36 38641862
    884621 8w73:A (2.601) BS02 FE N/A N/A A0A084EX36 38641862
    884622 8w73:A (2.601) BS03 FE N/A N/A A0A084EX36 38641862
    884623 8w74:A (2.5) BS01 FE N/A N/A A0A084EX36 38641862
    884624 8w74:A (2.5) BS02 FE N/A N/A A0A084EX36 38641862
    884625 8w74:A (2.5) BS03 FE N/A N/A A0A084EX36 38641862
    884626 8w74:A (2.5) BS04 FE N/A N/A A0A084EX36 38641862
    884627 8w75:A (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884628 8w75:B (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884629 8w75:C (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884630 8w75:D (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884631 8w78:A (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884632 8w78:A (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884633 8w78:B (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884634 8w78:B (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884635 8w78:C (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884636 8w78:C (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884637 8w78:D (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884638 8w78:D (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884639 8w79:A (2.697) BS01 FE N/A N/A A0A084EX36 38641862
    884640 8w79:A (2.697) BS02 FE N/A N/A A0A084EX36 38641862
    884641 8w79:A (2.697) BS03 FE N/A N/A A0A084EX36 38641862
    884642 8w7a:B (3.77) BS01 GTP N/A N/A A0A2U3S0J5 39154050
    884643 8w7b:A (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    884644 8w7b:A (2.7) BS02 FE N/A N/A A0A084EX36 38641862
    884645 8w7b:A (2.7) BS03 FE N/A N/A A0A084EX36 38641862
    884646 8w7b:A (2.7) BS04 FE N/A N/A A0A084EX36 38641862
    884647 8w7b:A (2.7) BS05 FE N/A N/A A0A084EX36 38641862
    884648 8w7c:A (3.0) BS01 R89 N/A N/A Q16740 N/A
    884649 8w7c:A (3.0) BS02 R89 N/A N/A Q16740 N/A
    884650 8w7c:B (3.0) BS01 R89 N/A N/A Q16740 N/A
    884651 8w7c:C (3.0) BS01 R89 N/A N/A Q16740 N/A
    884652 8w7c:C (3.0) BS02 R89 N/A N/A Q16740 N/A
    884653 8w7c:D (3.0) BS01 R89 N/A N/A Q16740 N/A
    884654 8w7c:D (3.0) BS02 R89 N/A N/A Q16740 N/A
    884655 8w7c:E (3.0) BS01 R89 N/A N/A Q16740 N/A
    884656 8w7c:F (3.0) BS01 R89 N/A N/A Q16740 N/A
    884657 8w7c:F (3.0) BS02 R89 N/A N/A Q16740 N/A
    884658 8w7c:G (3.0) BS01 R89 N/A N/A Q16740 N/A
    884659 8w7c:G (3.0) BS02 R89 N/A N/A Q16740 N/A
    884660 8w7d:A (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    884661 8w7d:B (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    884662 8w7d:C (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    884663 8w7d:D (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    884664 8w7e:A (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884665 8w7e:A (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884666 8w7e:B (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884667 8w7e:B (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884668 8w7e:C (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884669 8w7e:D (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884670 8w7e:D (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884671 8w7e:E (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884672 8w7e:E (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884673 8w7e:F (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884674 8w7e:F (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884675 8w7e:G (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884676 8w7e:G (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884677 8w7e:H (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884678 8w7e:H (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884679 8w7e:I (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884680 8w7e:I (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884681 8w7e:J (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884682 8w7e:K (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884683 8w7e:K (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884684 8w7e:L (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884685 8w7e:M (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884686 8w7e:M (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884687 8w7e:N (2.8) BS01 9I3 N/A N/A Q16740 N/A
    884688 8w7e:N (2.8) BS02 9I3 N/A N/A Q16740 N/A
    884689 8w7f:A (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884690 8w7f:B (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884691 8w7f:C (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884692 8w7f:D (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    884693 8w7g:A (1.8) BS01 HEM N/A N/A A0A1H5RFX8 N/A
    884694 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    884695 8w7j:A (3.98) BS01 GTP N/A N/A A0A2U3S0J5 39154050
    884696 8w7m:2 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    884697 8w7m:2 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    884698 8w7m:3 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P24279 37730685
    884699 8w7m:3 (4.12) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    884700 8w7m:3 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    884701 8w7m:4 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P30665 37730685
    884702 8w7m:4 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    884703 8w7m:4 (4.12) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    884704 8w7m:5 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    884705 8w7m:5 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    884706 8w7m:6 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    884707 8w7m:6 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    884708 8w7m:7 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P38132 37730685
    884709 8w7m:7 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    884710 8w7m:7 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    884711 8w7m:7 (4.12) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    884712 8w7o:A (2.399) BS01 FE N/A N/A A0A084EX36 38641862
    884713 8w7o:A (2.399) BS02 FE N/A N/A A0A084EX36 38641862
    884714 8w7o:A (2.399) BS03 FE N/A N/A A0A084EX36 38641862
    884715 8w7o:A (2.399) BS04 FE N/A N/A A0A084EX36 38641862
    884716 8w7q:A (2.1) BS01 FE N/A N/A A0A084EX36 38641862
    884717 8w7t:A (2.499) BS01 FE N/A N/A A0A084EX36 38641862
    884718 8w7t:A (2.499) BS02 FE N/A N/A A0A084EX36 38641862
    884719 8w7u:A (2.502) BS01 FE N/A N/A A0A084EX36 38641862
    884720 8w7v:A (2.805) BS01 FE N/A N/A A0A084EX36 38641862
    884721 8w7x:A (2.2) BS01 ZN N/A N/A N/A N/A
    884722 8w7x:A (2.2) BS02 BCT N/A N/A N/A N/A
    884723 8w7x:B (2.2) BS01 ZN N/A N/A N/A N/A
    884724 8w7x:B (2.2) BS02 BCT N/A N/A N/A N/A
    884725 8w7x:C (2.2) BS01 ZN N/A N/A N/A N/A
    884726 8w7x:C (2.2) BS02 BCT N/A N/A N/A N/A
    884727 8w7x:D (2.2) BS01 ZN N/A N/A N/A N/A
    884728 8w7x:D (2.2) BS02 BCT N/A N/A N/A N/A
    884729 8w7y:A (2.4) BS01 UDP N/A N/A N/A N/A
    884730 8w87:R (2.8) BS01 B40 ? GO:0001594 ... Q96RJ0 37935377
    884731 8w88:R (2.6) BS01 CLR ? GO:0001594 ... Q96RJ0 37935377
    884732 8w88:R (2.6) BS02 CLR ? GO:0001594 ... Q96RJ0 37935377
    884733 8w88:R (2.6) BS03 UJL ? GO:0001594 ... Q96RJ0 37935377
    884734 8w89:R (3.0) BS01 PEA ? GO:0001594 ... Q96RJ0 37935377
    884735 8w8a:R (2.8) BS01 T5U ? GO:0001594 ... Q96RJ0 37935377
    884736 8w8b:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    884737 8w8b:R (3.0) BS02 UJL ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    884738 8w8e:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884739 8w8e:A (3.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884740 8w8e:A (3.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884741 8w8e:A (3.9) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884742 8w8e:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884743 8w8e:A (3.9) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884744 8w8e:B (3.9) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    884745 8w8e:B (3.9) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    884746 8w8e:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    884747 8w8e:C (3.9) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    884748 8w8e:E (3.9) BS01 dna ? GO:0001054 ... I3LSI7 38816438
    884749 8w8e:I (3.9) BS01 ZN ? GO:0000428 ... P60899 38816438
    884750 8w8e:I (3.9) BS02 ZN ? GO:0000428 ... P60899 38816438
    884751 8w8e:L (3.9) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    884752 8w8e:Z (3.9) BS01 dna ? GO:0000122 ... O00267 38816438
    884753 8w8e:a (3.9) BS01 GTP 2.7.7.50
    3.6.1.74    		 GO:0003824 ... O60942 38816438
    884754 8w8f:A (4.0) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884755 8w8f:A (4.0) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884756 8w8f:A (4.0) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884757 8w8f:A (4.0) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884758 8w8f:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884759 8w8f:A (4.0) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    884760 8w8f:B (4.0) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    884761 8w8f:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    884762 8w8f:B (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    884763 8w8f:C (4.0) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    884764 8w8f:E (4.0) BS01 dna ? GO:0001054 ... I3LSI7 38816438
    884765 8w8f:I (4.0) BS01 ZN ? GO:0000428 ... P60899 38816438
    884766 8w8f:I (4.0) BS02 ZN ? GO:0000428 ... P60899 38816438
    884767 8w8f:L (4.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    884768 8w8f:Z (4.0) BS01 dna ? GO:0000122 ... O00267 38816438
    884769 8w8g:A (2.7) BS01 peptide N/A N/A P54274 N/A
    884770 8w8g:B (2.7) BS01 peptide N/A N/A P54274 N/A
    884771 8w8g:C (2.7) BS01 peptide N/A N/A P54274 N/A
    884772 8w8g:C (2.7) BS02 peptide N/A N/A P54274 N/A
    884773 8w8g:D (2.7) BS01 peptide N/A N/A P54274 N/A
    884774 8w8g:D (2.7) BS02 peptide N/A N/A P54274 N/A
    884775 8w8h:A (3.2) BS01 ILE N/A N/A N/A N/A
    884776 8w8h:A (3.2) BS02 ILE N/A N/A N/A N/A
    884777 8w8h:B (3.2) BS01 ILE N/A N/A N/A N/A
    884778 8w8h:B (3.2) BS02 ILE N/A N/A N/A N/A
    884779 8w8h:C (3.2) BS01 ILE N/A N/A N/A N/A
    884780 8w8h:C (3.2) BS02 ILE N/A N/A N/A N/A
    884781 8w8h:D (3.2) BS01 ILE N/A N/A N/A N/A
    884782 8w8h:D (3.2) BS02 ILE N/A N/A N/A N/A
    884783 8w8j:A (1.807) BS01 W1Q N/A N/A Q9I502 N/A
    884784 8w8j:B (1.807) BS01 W1Q N/A N/A Q9I502 N/A
    884785 8w8k:A (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    884786 8w8k:B (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    884787 8w8l:A (1.824) BS01 W20 N/A N/A Q9I502 N/A
    884788 8w8l:A (1.824) BS02 MG N/A N/A Q9I502 N/A
    884789 8w8l:A (1.824) BS03 MG N/A N/A Q9I502 N/A
    884790 8w8l:A (1.824) BS04 MG N/A N/A Q9I502 N/A
    884791 8w8l:A (1.824) BS05 MG N/A N/A Q9I502 N/A
    884792 8w8l:A (1.824) BS06 MG N/A N/A Q9I502 N/A
    884793 8w8l:A (1.824) BS07 MG N/A N/A Q9I502 N/A
    884794 8w8l:A (1.824) BS08 MG N/A N/A Q9I502 N/A
    884795 8w8l:B (1.824) BS01 W20 N/A N/A Q9I502 N/A
    884796 8w8l:B (1.824) BS02 MG N/A N/A Q9I502 N/A
    884797 8w8l:B (1.824) BS03 MG N/A N/A Q9I502 N/A
    884798 8w8n:B (2.693) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    884799 8w8n:C (2.693) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    884800 8w8n:C (2.693) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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