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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    884401 8w4p:4 (3.48) BS04 CLA N/A N/A N/A 38071196
    884402 8w4p:4 (3.48) BS05 CLA N/A N/A N/A 38071196
    884403 8w4p:4 (3.48) BS06 CLA N/A N/A N/A 38071196
    884404 8w4p:4 (3.48) BS07 CLA N/A N/A N/A 38071196
    884405 8w4p:4 (3.48) BS08 CLA N/A N/A N/A 38071196
    884406 8w4p:4 (3.48) BS09 CLA N/A N/A N/A 38071196
    884407 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    884408 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    884409 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    884410 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    884411 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    884412 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    884413 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    884414 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    884415 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    884416 8w4p:p (3.48) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    884417 8w4q:A (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    884418 8w4q:A (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    884419 8w4q:B (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    884420 8w4q:B (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    884421 8w4r:A (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    884422 8w4r:A (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    884423 8w4r:B (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    884424 8w4r:B (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    884425 8w4s:A (1.848) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    884426 8w4s:A (1.848) BS02 AJR 3.1.4.35 GO:0004114 ... O76074 37918035
    884427 8w4t:A (2.199) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    884428 8w4t:A (2.199) BS02 VZF 3.1.4.35 GO:0004114 ... O76074 37918035
    884429 8w4u:A (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    884430 8w4u:A (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    884431 8w4u:B (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    884432 8w4u:B (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    884433 8w4u:D (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    884434 8w4u:D (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    884435 8w4u:G (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    884436 8w4u:G (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    884437 8w4v:A (1.81) BS01 Q9O 3.6.4.10 GO:0005524 ... P07900 38665669
    884438 8w51:0 (2.4) BS01 rna N/A N/A P0AG51 N/A
    884439 8w51:1 (2.4) BS01 rna N/A N/A P0A7N4 N/A
    884440 8w51:2 (2.4) BS01 rna N/A N/A P0A7N9 N/A
    884441 8w51:3 (2.4) BS01 rna N/A N/A P0A7P5 N/A
    884442 8w51:4 (2.4) BS01 rna N/A N/A P0A7Q1 N/A
    884443 8w51:5 (2.4) BS01 rna N/A N/A P0A7Q6 N/A
    884444 8w51:5 (2.4) BS02 ZN N/A N/A P0A7Q6 N/A
    884445 8w51:C (2.4) BS01 rna N/A N/A P60422 N/A
    884446 8w51:D (2.4) BS01 rna N/A N/A C3SQU2 N/A
    884447 8w51:E (2.4) BS01 rna N/A N/A P60723 N/A
    884448 8w51:F (2.4) BS01 rna N/A N/A P62399 N/A
    884449 8w51:F (2.4) BS02 rna N/A N/A P62399 N/A
    884450 8w51:G (2.4) BS01 rna N/A N/A P0AG55 N/A
    884451 8w51:H (2.4) BS01 rna N/A N/A P0A7R1 N/A
    884452 8w51:J (2.4) BS01 rna N/A N/A A7ZUJ6 N/A
    884453 8w51:K (2.4) BS01 rna N/A N/A P0AA10 N/A
    884454 8w51:L (2.4) BS01 rna N/A N/A P0ADY3 N/A
    884455 8w51:M (2.4) BS01 rna N/A N/A P02413 N/A
    884456 8w51:N (2.4) BS01 rna N/A N/A P0ADY7 N/A
    884457 8w51:N (2.4) BS02 rna N/A N/A P0ADY7 N/A
    884458 8w51:O (2.4) BS01 rna N/A N/A P0AG44 N/A
    884459 8w51:P (2.4) BS01 rna N/A N/A P0C018 N/A
    884460 8w51:P (2.4) BS02 rna N/A N/A P0C018 N/A
    884461 8w51:Q (2.4) BS01 rna N/A N/A P0A7K6 N/A
    884462 8w51:R (2.4) BS01 rna N/A N/A P0A7L3 N/A
    884463 8w51:S (2.4) BS01 rna N/A N/A P0AG48 N/A
    884464 8w51:T (2.4) BS01 rna N/A N/A P61175 N/A
    884465 8w51:U (2.4) BS01 rna N/A N/A P0ADZ0 N/A
    884466 8w51:V (2.4) BS01 rna N/A N/A P60624 N/A
    884467 8w51:W (2.4) BS01 rna N/A N/A P68919 N/A
    884468 8w51:W (2.4) BS02 rna N/A N/A P68919 N/A
    884469 8w51:X (2.4) BS01 rna N/A N/A P0A7L8 N/A
    884470 8w51:X (2.4) BS02 rna N/A N/A P0A7L8 N/A
    884471 8w51:Y (2.4) BS01 rna N/A N/A P0A7M2 N/A
    884472 8w51:Z (2.4) BS01 rna N/A N/A P0A7M6 N/A
    884473 8w53:A (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    884474 8w53:B (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    884475 8w59:A (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    884476 8w59:A (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    884477 8w59:B (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    884478 8w59:B (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    884479 8w5a:A (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    884480 8w5a:A (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    884481 8w5a:B (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    884482 8w5a:B (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    884483 8w5c:A (2.3) BS01 VZO N/A N/A P22455 38348819
    884484 8w5c:B (2.3) BS01 VZO N/A N/A P22455 38348819
    884485 8w5k:F (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    884486 8w5k:I (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    884487 8w5s:A (2.1162) BS01 CA N/A N/A P20073 N/A
    884488 8w5s:A (2.1162) BS02 CA N/A N/A P20073 N/A
    884489 8w5s:A (2.1162) BS03 CA N/A N/A P20073 N/A
    884490 8w5s:A (2.1162) BS04 CA N/A N/A P20073 N/A
    884491 8w5s:A (2.1162) BS05 CA N/A N/A P20073 N/A
    884492 8w5s:A (2.1162) BS06 CA N/A N/A P20073 N/A
    884493 8w5s:A (2.1162) BS07 CA N/A N/A P20073 N/A
    884494 8w5s:B (2.1162) BS01 CA N/A N/A P20073 N/A
    884495 8w5s:B (2.1162) BS02 CA N/A N/A P20073 N/A
    884496 8w5s:B (2.1162) BS03 CA N/A N/A P20073 N/A
    884497 8w5s:B (2.1162) BS04 CA N/A N/A P20073 N/A
    884498 8w5s:B (2.1162) BS05 CA N/A N/A P20073 N/A
    884499 8w5s:B (2.1162) BS06 CA N/A N/A P20073 N/A
    884500 8w5s:B (2.1162) BS07 CA N/A N/A P20073 N/A
    884501 8w5s:B (2.1162) BS08 CA N/A N/A P20073 N/A
    884502 8w5s:C (2.1162) BS01 CA N/A N/A P20073 N/A
    884503 8w5s:C (2.1162) BS02 CA N/A N/A P20073 N/A
    884504 8w5s:C (2.1162) BS03 CA N/A N/A P20073 N/A
    884505 8w5s:C (2.1162) BS04 CA N/A N/A P20073 N/A
    884506 8w5s:C (2.1162) BS05 CA N/A N/A P20073 N/A
    884507 8w5s:C (2.1162) BS06 CA N/A N/A P20073 N/A
    884508 8w5s:C (2.1162) BS07 CA N/A N/A P20073 N/A
    884509 8w5s:C (2.1162) BS08 CA N/A N/A P20073 N/A
    884510 8w5s:C (2.1162) BS09 CA N/A N/A P20073 N/A
    884511 8w5s:C (2.1162) BS10 CA N/A N/A P20073 N/A
    884512 8w5s:C (2.1162) BS11 CA N/A N/A P20073 N/A
    884513 8w5z:A (1.55) BS01 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884514 8w5z:A (1.55) BS02 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884515 8w5z:A (1.55) BS03 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884516 8w5z:A (1.55) BS04 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884517 8w5z:A (1.55) BS05 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884518 8w5z:A (1.55) BS06 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884519 8w5z:C (1.55) BS01 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884520 8w5z:C (1.55) BS02 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884521 8w5z:C (1.55) BS03 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    884522 8w69:A (3.6) BS01 peptide N/A N/A C3SRW2 N/A
    884523 8w69:B (3.6) BS01 peptide N/A N/A C3SRW2 N/A
    884524 8w69:C (3.6) BS01 peptide N/A N/A C3SRW2 N/A
    884525 8w6a:A (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    884526 8w6a:B (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    884527 8w6a:D (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    884528 8w6a:G (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    884529 8w6a:G (1.53) BS02 peptide N/A GO:0000045 ... O95166 38437556
    884530 8w6c:A (2.7) BS01 NA ? GO:0005515 ... Q13183 38552027
    884531 8w6c:A (2.7) BS02 NA ? GO:0005515 ... Q13183 38552027
    884532 8w6c:A (2.7) BS03 Y01 ? GO:0005515 ... Q13183 38552027
    884533 8w6c:B (2.7) BS01 Y01 ? GO:0005515 ... Q13183 38552027
    884534 8w6c:B (2.7) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    884535 8w6c:B (2.7) BS03 NA ? GO:0005515 ... Q13183 38552027
    884536 8w6c:B (2.7) BS04 NA ? GO:0005515 ... Q13183 38552027
    884537 8w6d:A (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    884538 8w6d:A (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    884539 8w6d:B (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    884540 8w6d:B (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    884541 8w6g:A (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    884542 8w6g:A (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    884543 8w6g:B (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    884544 8w6g:B (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    884545 8w6h:A (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    884546 8w6h:A (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    884547 8w6h:A (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    884548 8w6h:B (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    884549 8w6h:B (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    884550 8w6h:B (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    884551 8w6i:B (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    884552 8w6i:B (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    884553 8w6i:D (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    884554 8w6i:D (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    884555 8w6j:B (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    884556 8w6j:B (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    884557 8w6j:D (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    884558 8w6j:D (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    884559 8w6l:A (2.03) BS01 peptide N/A N/A B1A9P1 N/A
    884560 8w6m:A (2.501) BS01 FE N/A N/A A0A084EX36 38641862
    884561 8w6n:A (3.2) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    884562 8w6n:B (3.2) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    884563 8w6o:A (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    884564 8w6o:A (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    884565 8w6o:A (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    884566 8w6o:B (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    884567 8w6o:B (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    884568 8w6o:B (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    884569 8w6p:A (1.91) BS01 FUC 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884570 8w6p:A (1.91) BS02 YA4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884571 8w6p:A (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884572 8w6p:A (1.91) BS04 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884573 8w6p:B (1.91) BS01 PO4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884574 8w6p:B (1.91) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884575 8w6p:B (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884576 8w6q:A (2.101) BS01 FE N/A N/A A0A084EX36 38641862
    884577 8w6q:A (2.101) BS02 FE N/A N/A A0A084EX36 38641862
    884578 8w6q:A (2.101) BS03 FE N/A N/A A0A084EX36 38641862
    884579 8w6q:A (2.101) BS04 FE N/A N/A A0A084EX36 38641862
    884580 8w6q:A (2.101) BS05 FE N/A N/A A0A084EX36 38641862
    884581 8w6q:A (2.101) BS06 FE N/A N/A A0A084EX36 38641862
    884582 8w6q:A (2.101) BS07 FE N/A N/A A0A084EX36 38641862
    884583 8w6q:A (2.101) BS08 FE N/A N/A A0A084EX36 38641862
    884584 8w6q:A (2.101) BS09 FE N/A N/A A0A084EX36 38641862
    884585 8w6r:A (1.95) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884586 8w6r:A (1.95) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    884587 8w6s:A (2.099) BS01 FE N/A N/A A0A084EX36 38641862
    884588 8w6s:A (2.099) BS02 FE N/A N/A A0A084EX36 38641862
    884589 8w6s:A (2.099) BS03 FE N/A N/A A0A084EX36 38641862
    884590 8w6s:A (2.099) BS04 FE N/A N/A A0A084EX36 38641862
    884591 8w6s:A (2.099) BS05 FE N/A N/A A0A084EX36 38641862
    884592 8w6s:A (2.099) BS06 FE N/A N/A A0A084EX36 38641862
    884593 8w6u:A (2.099) BS01 FE N/A N/A A0A084EX36 38641862
    884594 8w6u:A (2.099) BS02 FE N/A N/A A0A084EX36 38641862
    884595 8w6u:A (2.099) BS03 FE N/A N/A A0A084EX36 38641862
    884596 8w6u:A (2.099) BS04 FE N/A N/A A0A084EX36 38641862
    884597 8w6u:A (2.099) BS05 FE N/A N/A A0A084EX36 38641862
    884598 8w6u:A (2.099) BS06 FE N/A N/A A0A084EX36 38641862
    884599 8w6u:A (2.099) BS07 FE N/A N/A A0A084EX36 38641862
    884600 8w6u:A (2.099) BS08 FE N/A N/A A0A084EX36 38641862
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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