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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    884001 8w1e:J (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884002 8w1e:J (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884003 8w1e:K (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884004 8w1e:K (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884005 8w1e:L (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884006 8w1e:L (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884007 8w1f:A (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884008 8w1f:A (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884009 8w1f:A (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884010 8w1f:B (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884011 8w1f:B (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884012 8w1f:B (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884013 8w1f:C (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884014 8w1f:C (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884015 8w1f:C (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884016 8w1f:D (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884017 8w1f:D (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884018 8w1f:D (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884019 8w1f:E (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884020 8w1f:E (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884021 8w1f:E (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884022 8w1f:F (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884023 8w1f:F (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884024 8w1f:F (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884025 8w1f:G (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884026 8w1f:G (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884027 8w1f:G (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884028 8w1f:H (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884029 8w1f:H (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884030 8w1f:H (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884031 8w1f:I (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884032 8w1f:I (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884033 8w1f:I (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884034 8w1f:J (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884035 8w1f:J (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884036 8w1f:J (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884037 8w1f:K (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884038 8w1f:K (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884039 8w1f:K (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884040 8w1f:L (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    884041 8w1f:L (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884042 8w1f:L (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884043 8w1h:A (2.1) BS01 HEM N/A N/A P48775 39106326
    884044 8w1h:A (2.1) BS02 ZIQ N/A N/A P48775 39106326
    884045 8w1h:A (2.1) BS03 A1AEY N/A N/A P48775 39106326
    884046 8w1h:A (2.1) BS04 A1AEY N/A N/A P48775 39106326
    884047 8w1h:B (2.1) BS01 A1AEY N/A N/A P48775 39106326
    884048 8w1h:B (2.1) BS02 HEM N/A N/A P48775 39106326
    884049 8w1h:B (2.1) BS03 ZIQ N/A N/A P48775 39106326
    884050 8w1h:B (2.1) BS04 A1AEY N/A N/A P48775 39106326
    884051 8w1h:C (2.1) BS01 HEM N/A N/A P48775 39106326
    884052 8w1h:C (2.1) BS02 ZIQ N/A N/A P48775 39106326
    884053 8w1h:C (2.1) BS03 A1AEY N/A N/A P48775 39106326
    884054 8w1h:C (2.1) BS04 A1AEY N/A N/A P48775 39106326
    884055 8w1h:D (2.1) BS01 A1AEY N/A N/A P48775 39106326
    884056 8w1h:D (2.1) BS02 HEM N/A N/A P48775 39106326
    884057 8w1h:D (2.1) BS03 ZIQ N/A N/A P48775 39106326
    884058 8w1h:D (2.1) BS04 A1AEY N/A N/A P48775 39106326
    884059 8w1l:A (2.26) BS01 A1AE3 2.7.10.1 N/A P07333 38746878
    884060 8w1o:K (2.8) BS01 rna 2.7.7.48 GO:0000166 ... W0G557 38614100
    884061 8w1o:K (2.8) BS02 rna 2.7.7.48 GO:0000166 ... W0G557 38614100
    884062 8w1p:A (3.5) BS01 rna N/A N/A N/A 39111310
    884063 8w1p:A (3.5) BS02 dna N/A N/A N/A 39111310
    884064 8w1p:B (3.5) BS01 rna N/A N/A N/A 39111310
    884065 8w1p:B (3.5) BS02 dna N/A N/A N/A 39111310
    884066 8w1p:C (3.5) BS01 rna N/A N/A N/A 39111310
    884067 8w1p:C (3.5) BS02 dna N/A N/A N/A 39111310
    884068 8w1p:D (3.5) BS01 rna N/A N/A N/A 39111310
    884069 8w1p:D (3.5) BS02 dna N/A N/A N/A 39111310
    884070 8w1p:E (3.5) BS01 rna N/A N/A N/A 39111310
    884071 8w1p:E (3.5) BS02 dna N/A N/A N/A 39111310
    884072 8w1p:F (3.5) BS01 rna N/A N/A N/A 39111310
    884073 8w1p:G (3.5) BS01 dna N/A N/A N/A 39111310
    884074 8w1p:G (3.5) BS02 rna N/A N/A N/A 39111310
    884075 8w1p:G (3.5) BS03 dna N/A N/A N/A 39111310
    884076 8w1p:H (3.5) BS01 rna N/A N/A N/A 39111310
    884077 8w1p:H (3.5) BS02 dna N/A N/A N/A 39111310
    884078 8w1p:I (3.5) BS01 rna N/A N/A N/A 39111310
    884079 8w1q:A (1.56) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    884080 8w1q:B (1.56) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    884081 8w1v:A (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550    		 38952152
    884082 8w1v:A (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550    		 38952152
    884083 8w1v:B (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550    		 38952152
    884084 8w1v:B (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550    		 38952152
    884085 8w21:A (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    884086 8w21:B (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    884087 8w21:C (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    884088 8w21:E (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    884089 8w21:G (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    884090 8w21:H (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    884091 8w2d:A (2.7) BS01 PNS N/A N/A A0A1I9RH13 38908753
    884092 8w2d:B (2.7) BS01 PNS N/A N/A A0A1I9RH13 38908753
    884093 8w2f:L (3.1) BS01 A1AE6 N/A N/A Q8IJT1 39084225
    884094 8w2f:M (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    884095 8w2f:Z (3.1) BS01 A1AE6 N/A N/A Q8IJT1 39084225
    884096 8w2f:a (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    884097 8w2g:A (3.0) BS01 F6P N/A N/A P17858 39183237
    884098 8w2g:A (3.0) BS02 ADP N/A N/A P17858 39183237
    884099 8w2g:A (3.0) BS03 ADP N/A N/A P17858 39183237
    884100 8w2g:A (3.0) BS04 ADP N/A N/A P17858 39183237
    884101 8w2g:A (3.0) BS05 FBP N/A N/A P17858 39183237
    884102 8w2g:A (3.0) BS06 F6P N/A N/A P17858 39183237
    884103 8w2g:A (3.0) BS07 FBP N/A N/A P17858 39183237
    884104 8w2g:B (3.0) BS01 F6P N/A N/A P17858 39183237
    884105 8w2g:B (3.0) BS02 FBP N/A N/A P17858 39183237
    884106 8w2g:B (3.0) BS03 F6P N/A N/A P17858 39183237
    884107 8w2g:B (3.0) BS04 ADP N/A N/A P17858 39183237
    884108 8w2g:B (3.0) BS05 ADP N/A N/A P17858 39183237
    884109 8w2g:B (3.0) BS06 ADP N/A N/A P17858 39183237
    884110 8w2g:B (3.0) BS07 FBP N/A N/A P17858 39183237
    884111 8w2g:C (3.0) BS01 F6P N/A N/A P17858 39183237
    884112 8w2g:C (3.0) BS02 F6P N/A N/A P17858 39183237
    884113 8w2g:C (3.0) BS03 ADP N/A N/A P17858 39183237
    884114 8w2g:C (3.0) BS04 ADP N/A N/A P17858 39183237
    884115 8w2g:C (3.0) BS05 ADP N/A N/A P17858 39183237
    884116 8w2g:C (3.0) BS06 FBP N/A N/A P17858 39183237
    884117 8w2g:D (3.0) BS01 F6P N/A N/A P17858 39183237
    884118 8w2g:D (3.0) BS02 ADP N/A N/A P17858 39183237
    884119 8w2g:D (3.0) BS03 ADP N/A N/A P17858 39183237
    884120 8w2g:D (3.0) BS04 ADP N/A N/A P17858 39183237
    884121 8w2g:D (3.0) BS05 FBP N/A N/A P17858 39183237
    884122 8w2g:D (3.0) BS06 F6P N/A N/A P17858 39183237
    884123 8w2h:A (2.6) BS01 FBP N/A N/A P17858 39183237
    884124 8w2h:A (2.6) BS02 ATP N/A N/A P17858 39183237
    884125 8w2h:A (2.6) BS03 ATP N/A N/A P17858 39183237
    884126 8w2h:A (2.6) BS04 ATP N/A N/A P17858 39183237
    884127 8w2h:A (2.6) BS05 FBP N/A N/A P17858 39183237
    884128 8w2h:B (2.6) BS01 FBP N/A N/A P17858 39183237
    884129 8w2h:B (2.6) BS02 FBP N/A N/A P17858 39183237
    884130 8w2h:B (2.6) BS03 ATP N/A N/A P17858 39183237
    884131 8w2h:B (2.6) BS04 ATP N/A N/A P17858 39183237
    884132 8w2h:B (2.6) BS05 ATP N/A N/A P17858 39183237
    884133 8w2h:C (2.6) BS01 FBP N/A N/A P17858 39183237
    884134 8w2h:C (2.6) BS02 ATP N/A N/A P17858 39183237
    884135 8w2h:C (2.6) BS03 ATP N/A N/A P17858 39183237
    884136 8w2h:C (2.6) BS04 ATP N/A N/A P17858 39183237
    884137 8w2h:C (2.6) BS05 FBP N/A N/A P17858 39183237
    884138 8w2h:D (2.6) BS01 FBP N/A N/A P17858 39183237
    884139 8w2h:D (2.6) BS02 FBP N/A N/A P17858 39183237
    884140 8w2h:D (2.6) BS03 ATP N/A N/A P17858 39183237
    884141 8w2h:D (2.6) BS04 ATP N/A N/A P17858 39183237
    884142 8w2h:D (2.6) BS05 ATP N/A N/A P17858 39183237
    884143 8w2j:A (3.1) BS01 FBP N/A N/A P17858 39183237
    884144 8w2j:A (3.1) BS02 ATP N/A N/A P17858 39183237
    884145 8w2j:A (3.1) BS03 ATP N/A N/A P17858 39183237
    884146 8w2j:A (3.1) BS04 ATP N/A N/A P17858 39183237
    884147 8w2j:A (3.1) BS05 FBP N/A N/A P17858 39183237
    884148 8w2j:B (3.1) BS01 FBP N/A N/A P17858 39183237
    884149 8w2j:B (3.1) BS02 FBP N/A N/A P17858 39183237
    884150 8w2j:B (3.1) BS03 ATP N/A N/A P17858 39183237
    884151 8w2j:B (3.1) BS04 ATP N/A N/A P17858 39183237
    884152 8w2j:B (3.1) BS05 ATP N/A N/A P17858 39183237
    884153 8w2j:C (3.1) BS01 FBP N/A N/A P17858 39183237
    884154 8w2j:C (3.1) BS02 ATP N/A N/A P17858 39183237
    884155 8w2j:C (3.1) BS03 ATP N/A N/A P17858 39183237
    884156 8w2j:C (3.1) BS04 ATP N/A N/A P17858 39183237
    884157 8w2j:C (3.1) BS05 FBP N/A N/A P17858 39183237
    884158 8w2j:D (3.1) BS01 FBP N/A N/A P17858 39183237
    884159 8w2j:D (3.1) BS02 FBP N/A N/A P17858 39183237
    884160 8w2j:D (3.1) BS03 ATP N/A N/A P17858 39183237
    884161 8w2j:D (3.1) BS04 ATP N/A N/A P17858 39183237
    884162 8w2j:D (3.1) BS05 ATP N/A N/A P17858 39183237
    884163 8w2j:E (3.1) BS01 FBP N/A N/A P17858 39183237
    884164 8w2j:E (3.1) BS02 ATP N/A N/A P17858 39183237
    884165 8w2j:E (3.1) BS03 ATP N/A N/A P17858 39183237
    884166 8w2j:E (3.1) BS04 ATP N/A N/A P17858 39183237
    884167 8w2j:E (3.1) BS05 FBP N/A N/A P17858 39183237
    884168 8w2j:F (3.1) BS01 FBP N/A N/A P17858 39183237
    884169 8w2j:F (3.1) BS02 FBP N/A N/A P17858 39183237
    884170 8w2j:F (3.1) BS03 ATP N/A N/A P17858 39183237
    884171 8w2j:F (3.1) BS04 ATP N/A N/A P17858 39183237
    884172 8w2j:F (3.1) BS05 ATP N/A N/A P17858 39183237
    884173 8w2j:G (3.1) BS01 FBP N/A N/A P17858 39183237
    884174 8w2j:G (3.1) BS02 ATP N/A N/A P17858 39183237
    884175 8w2j:G (3.1) BS03 ATP N/A N/A P17858 39183237
    884176 8w2j:G (3.1) BS04 ATP N/A N/A P17858 39183237
    884177 8w2j:G (3.1) BS05 FBP N/A N/A P17858 39183237
    884178 8w2j:H (3.1) BS01 FBP N/A N/A P17858 39183237
    884179 8w2j:H (3.1) BS02 FBP N/A N/A P17858 39183237
    884180 8w2j:H (3.1) BS03 ATP N/A N/A P17858 39183237
    884181 8w2j:H (3.1) BS04 ATP N/A N/A P17858 39183237
    884182 8w2j:H (3.1) BS05 ATP N/A N/A P17858 39183237
    884183 8w2k:A (2.45) BS01 HEM N/A N/A P48775 39106326
    884184 8w2k:A (2.45) BS02 ZIQ N/A N/A P48775 39106326
    884185 8w2k:A (2.45) BS03 A1AE7 N/A N/A P48775 39106326
    884186 8w2k:A (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    884187 8w2k:B (2.45) BS01 A1AE7 N/A N/A P48775 39106326
    884188 8w2k:B (2.45) BS02 HEM N/A N/A P48775 39106326
    884189 8w2k:B (2.45) BS03 ZIQ N/A N/A P48775 39106326
    884190 8w2k:B (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    884191 8w2k:C (2.45) BS01 HEM N/A N/A P48775 39106326
    884192 8w2k:C (2.45) BS02 ZIQ N/A N/A P48775 39106326
    884193 8w2k:C (2.45) BS03 A1AE7 N/A N/A P48775 39106326
    884194 8w2k:C (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    884195 8w2k:D (2.45) BS01 A1AE7 N/A N/A P48775 39106326
    884196 8w2k:D (2.45) BS02 HEM N/A N/A P48775 39106326
    884197 8w2k:D (2.45) BS03 ZIQ N/A N/A P48775 39106326
    884198 8w2k:D (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    884199 8w2l:A (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    884200 8w2l:A (2.45) BS02 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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