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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    883801 8vyx:C (1.69) BS01 A1AHU ? N/A P03372 38830107
    883802 8vyx:D (1.69) BS01 A1AHU ? N/A P03372 38830107
    883803 8vz0:A (1.86) BS01 A1AHO ? N/A P03372 38830107
    883804 8vz0:B (1.86) BS01 A1AHO ? N/A P03372 38830107
    883805 8vz0:C (1.86) BS01 A1AHO ? N/A P03372 38830107
    883806 8vz0:D (1.86) BS01 A1AHO ? N/A P03372 38830107
    883807 8vz1:A (1.82) BS01 A1AHS ? N/A P03372 38830107
    883808 8vz1:B (1.82) BS01 A1AHS ? N/A P03372 38830107
    883809 8vz1:C (1.82) BS01 A1AHS ? N/A P03372 38830107
    883810 8vz1:D (1.82) BS01 A1AHS ? N/A P03372 38830107
    883811 8vz4:A (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    883812 8vz4:B (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    883813 8vz7:A (2.53) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    883814 8vz7:A (2.53) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    883815 8vz7:A (2.53) BS03 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    883816 8vz7:A (2.53) BS04 FRU 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    883817 8vz8:A (3.45) BS01 2LJ ? N/A Q8HWB0 38537698
    883818 8vz9:A (3.4) BS01 2LJ ? N/A Q8HWB0 38537698
    883819 8vzl:A (2.41) BS01 dna 6.5.1.1 N/A P18858 38522520
    883820 8vzl:A (2.41) BS02 dna 6.5.1.1 N/A P18858 38522520
    883821 8vzl:A (2.41) BS03 dna 6.5.1.1 N/A P18858 38522520
    883822 8vzl:A (2.41) BS04 AMP 6.5.1.1 N/A P18858 38522520
    883823 8vzm:A (2.51) BS01 dna 6.5.1.1 N/A P18858 38522520
    883824 8vzm:A (2.51) BS02 dna 6.5.1.1 N/A P18858 38522520
    883825 8vzm:A (2.51) BS03 dna 6.5.1.1 N/A P18858 38522520
    883826 8vzm:A (2.51) BS04 AMP 6.5.1.1 N/A P18858 38522520
    883827 8vzn:A (2.77) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    883828 8vzo:A (2.49) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    883829 8vzp:A (1.72) BS01 A1AHW ? N/A P03372 38830107
    883830 8vzp:B (1.72) BS01 A1AHW ? N/A P03372 38830107
    883831 8vzp:C (1.72) BS01 A1AHW ? N/A P03372 38830107
    883832 8vzp:D (1.72) BS01 A1AHW ? N/A P03372 38830107
    883833 8vzq:A (1.75) BS01 A1AHX ? N/A P03372 38830107
    883834 8vzq:B (1.75) BS01 A1AHX ? N/A P03372 38830107
    883835 8vzq:C (1.75) BS01 A1AHX ? N/A P03372 38830107
    883836 8vzq:D (1.75) BS01 A1AHX ? N/A P03372 38830107
    883837 8vzr:A (1.64) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    883838 8vzr:A (1.64) BS02 MWJ N/A GO:0004601 ... Q9NAV8 38959050
    883839 8vzr:A (1.64) BS03 OXY N/A GO:0004601 ... Q9NAV8 38959050
    883840 8vzr:B (1.64) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    883841 8vzr:B (1.64) BS02 MWJ N/A GO:0004601 ... Q9NAV8 38959050
    883842 8vzr:B (1.64) BS03 OXY N/A GO:0004601 ... Q9NAV8 38959050
    883843 8vzv:AAA (2.29) BS01 HEM N/A N/A P48775 39106326
    883844 8vzv:AAA (2.29) BS02 ZIQ N/A N/A P48775 39106326
    883845 8vzv:AAA (2.29) BS03 A1AER N/A N/A P48775 39106326
    883846 8vzv:BBB (2.29) BS01 A1AER N/A N/A P48775 39106326
    883847 8vzv:BBB (2.29) BS02 HEM N/A N/A P48775 39106326
    883848 8vzv:BBB (2.29) BS03 ZIQ N/A N/A P48775 39106326
    883849 8vzv:BBB (2.29) BS04 A1AER N/A N/A P48775 39106326
    883850 8vzv:CCC (2.29) BS01 HEM N/A N/A P48775 39106326
    883851 8vzv:CCC (2.29) BS02 ZIQ N/A N/A P48775 39106326
    883852 8vzv:CCC (2.29) BS03 A1AER N/A N/A P48775 39106326
    883853 8vzv:DDD (2.29) BS01 HEM N/A N/A P48775 39106326
    883854 8vzv:DDD (2.29) BS02 ZIQ N/A N/A P48775 39106326
    883855 8vzv:DDD (2.29) BS03 A1AER N/A N/A P48775 39106326
    883856 8vzx:C (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883857 8vzx:D (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883858 8vzy:A (1.34) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883859 8vzz:A (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883860 8vzz:B (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883861 8w00:A (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883862 8w00:B (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883863 8w02:B (1.499) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    883864 8w03:A (1.68) BS01 OBT ? N/A P03372 38830107
    883865 8w03:B (1.68) BS01 OBT ? N/A P03372 38830107
    883866 8w03:C (1.68) BS01 OBT ? N/A P03372 38830107
    883867 8w03:D (1.68) BS01 OBT ? N/A P03372 38830107
    883868 8w06:A (2.06) BS01 PGH N/A N/A N/A 39145435
    883869 8w06:B (2.06) BS01 PGH N/A N/A N/A 39145435
    883870 8w06:C (2.06) BS01 PGH N/A N/A N/A 39145435
    883871 8w06:D (2.06) BS01 PGH N/A N/A N/A 39145435
    883872 8w06:E (2.06) BS01 PGH N/A N/A N/A 39145435
    883873 8w06:F (2.06) BS01 PGH N/A N/A N/A 39145435
    883874 8w06:G (2.06) BS01 PGH N/A N/A N/A 39145435
    883875 8w06:H (2.06) BS01 PGH N/A N/A N/A 39145435
    883876 8w07:A (1.83) BS01 A1AHY ? N/A P03372 38830107
    883877 8w07:B (1.83) BS01 A1AHZ ? N/A P03372 38830107
    883878 8w07:C (1.83) BS01 A1AHZ ? N/A P03372 38830107
    883879 8w07:D (1.83) BS01 A1AHZ ? N/A P03372 38830107
    883880 8w09:A (3.2) BS01 dna ? GO:0003676 ... P12497 38582148
    883881 8w09:A (3.2) BS02 dna ? GO:0003676 ... P12497 38582148
    883882 8w09:A (3.2) BS03 dna ? GO:0003676 ... P12497 38582148
    883883 8w09:A (3.2) BS04 dna ? GO:0003676 ... P12497 38582148
    883884 8w09:A (3.2) BS05 MG ? GO:0003676 ... P12497 38582148
    883885 8w09:A (3.2) BS06 MG ? GO:0003676 ... P12497 38582148
    883886 8w09:A (3.2) BS07 ZN ? GO:0003676 ... P12497 38582148
    883887 8w09:A (3.2) BS08 DLU ? GO:0003676 ... P12497 38582148
    883888 8w09:D (3.2) BS01 dna ? GO:0003676 ... P12497 38582148
    883889 8w09:D (3.2) BS02 dna ? GO:0003676 ... P12497 38582148
    883890 8w09:I (3.2) BS01 dna ? GO:0003676 ... P12497 38582148
    883891 8w09:I (3.2) BS02 dna ? GO:0003676 ... P12497 38582148
    883892 8w09:I (3.2) BS03 dna ? GO:0003676 ... P12497 38582148
    883893 8w09:I (3.2) BS04 dna ? GO:0003676 ... P12497 38582148
    883894 8w09:I (3.2) BS05 MG ? GO:0003676 ... P12497 38582148
    883895 8w09:I (3.2) BS06 MG ? GO:0003676 ... P12497 38582148
    883896 8w09:I (3.2) BS07 ZN ? GO:0003676 ... P12497 38582148
    883897 8w09:I (3.2) BS08 DLU ? GO:0003676 ... P12497 38582148
    883898 8w09:M (3.2) BS01 dna ? GO:0003676 ... P12497 38582148
    883899 8w09:M (3.2) BS02 dna ? GO:0003676 ... P12497 38582148
    883900 8w0a:A (3.2) BS01 dna N/A N/A O75417 38895274
    883901 8w0a:C (3.2) BS01 dna N/A N/A O75417 38895274
    883902 8w0b:A (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883903 8w0b:B (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883904 8w0b:C (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883905 8w0c:A (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883906 8w0c:B (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883907 8w0c:C (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883908 8w0d:A (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883909 8w0d:B (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883910 8w0d:C (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883911 8w0h:A (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883912 8w0h:B (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883913 8w0h:C (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883914 8w0j:A (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883915 8w0j:B (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883916 8w0j:C (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883917 8w0k:A (1.42) BS01 FAD N/A N/A F7X6I3 39133178
    883918 8w0k:A (1.42) BS02 GHO N/A N/A F7X6I3 39133178
    883919 8w0k:B (1.42) BS01 FAD N/A N/A F7X6I3 39133178
    883920 8w0k:B (1.42) BS02 GHO N/A N/A F7X6I3 39133178
    883921 8w0l:A (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883922 8w0l:A (2.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883923 8w0l:B (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883924 8w0l:C (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883925 8w0l:C (2.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883926 8w0m:A (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883927 8w0m:B (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883928 8w0m:C (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    883929 8w0n:A (1.37) BS01 NAD N/A N/A N/A N/A
    883930 8w0n:B (1.37) BS01 NAD N/A N/A N/A N/A
    883931 8w0o:A (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883932 8w0o:B (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883933 8w0o:C (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883934 8w0o:D (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883935 8w0o:E (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883936 8w0o:F (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883937 8w0o:G (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883938 8w0o:H (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    883939 8w0r:A (2.8) BS01 A1AEU N/A GO:0000247 ... Q15125 38470227
    883940 8w0r:B (2.8) BS01 A1AEU N/A GO:0000247 ... Q15125 38470227
    883941 8w0s:A (2.8) BS01 A1AEV N/A GO:0000247 ... Q15125 38470227
    883942 8w0s:B (2.8) BS01 A1AEV N/A GO:0000247 ... Q15125 38470227
    883943 8w0t:A (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883944 8w0t:A (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883945 8w0t:B (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883946 8w0t:B (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883947 8w0t:C (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883948 8w0t:C (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883949 8w0t:D (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883950 8w0t:D (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883951 8w0u:A (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883952 8w0u:A (2.8) BS02 CAA N/A GO:0000062 ... P28330 38839792
    883953 8w0u:A (2.8) BS03 FAD N/A GO:0000062 ... P28330 38839792
    883954 8w0u:B (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883955 8w0u:B (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883956 8w0u:B (2.8) BS03 CAA N/A GO:0000062 ... P28330 38839792
    883957 8w0u:C (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883958 8w0u:C (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883959 8w0u:D (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883960 8w0u:D (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883961 8w0z:A (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883962 8w0z:A (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883963 8w0z:B (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883964 8w0z:B (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883965 8w0z:C (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883966 8w0z:C (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883967 8w0z:D (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883968 8w0z:D (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883969 8w0z:E (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883970 8w0z:E (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883971 8w0z:F (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883972 8w0z:F (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883973 8w0z:G (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883974 8w0z:G (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883975 8w0z:H (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    883976 8w0z:H (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    883977 8w13:A (1.81) BS01 A1AEW N/A N/A Q9H7Z6 39236793
    883978 8w13:A (1.81) BS02 ZN N/A N/A Q9H7Z6 39236793
    883979 8w14:A (1.6) BS01 SO4 N/A N/A N/A 39073218
    883980 8w14:B (1.6) BS01 SO4 N/A N/A N/A 39073218
    883981 8w1d:A (1.3) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883982 8w1d:A (1.3) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883983 8w1e:A (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883984 8w1e:A (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883985 8w1e:B (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883986 8w1e:B (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883987 8w1e:C (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883988 8w1e:C (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883989 8w1e:D (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883990 8w1e:D (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883991 8w1e:E (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883992 8w1e:E (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883993 8w1e:F (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883994 8w1e:F (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883995 8w1e:G (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883996 8w1e:G (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883997 8w1e:H (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883998 8w1e:H (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    883999 8w1e:I (2.9) BS01 FE2 ? GO:0004322 ... Q9HUT3 38841187
    884000 8w1e:I (2.9) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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