Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4409 4410 4411 4412 4413 4414 4415 4416 4417 4418 4419 4420 4421 4422 4423 4424 4425 4426 4427 4428 4429 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    883601 8vty:22 (2.6) BS01 rna N/A N/A Q5SHP6 39039256
    883602 8vty:23 (2.6) BS01 rna N/A N/A Q5SHQ6 39039256
    883603 8vty:23 (2.6) BS02 rna N/A N/A Q5SHQ6 39039256
    883604 8vty:23 (2.6) BS03 MG N/A N/A Q5SHQ6 39039256
    883605 8vty:24 (2.6) BS01 rna N/A N/A Q5SJE1 39039256
    883606 8vty:24 (2.6) BS02 ZN N/A N/A Q5SJE1 39039256
    883607 8vty:25 (2.6) BS01 rna N/A N/A P80339 39039256
    883608 8vty:25 (2.6) BS02 ZN N/A N/A P80339 39039256
    883609 8vty:26 (2.6) BS01 rna N/A N/A P35871 39039256
    883610 8vty:26 (2.6) BS02 ZN N/A N/A P35871 39039256
    883611 8vty:27 (2.6) BS01 rna N/A N/A P80340 39039256
    883612 8vty:27 (2.6) BS02 MG N/A N/A P80340 39039256
    883613 8vty:27 (2.6) BS03 MG N/A N/A P80340 39039256
    883614 8vty:28 (2.6) BS01 rna N/A N/A Q5SKU1 39039256
    883615 8vty:29 (2.6) BS01 rna N/A N/A Q5SHR2 39039256
    883616 8vty:29 (2.6) BS02 ZN N/A N/A Q5SHR2 39039256
    883617 8vty:2D (2.6) BS01 rna N/A N/A P60405 39039256
    883618 8vty:2D (2.6) BS02 rna N/A N/A P60405 39039256
    883619 8vty:2D (2.6) BS03 MG N/A N/A P60405 39039256
    883620 8vty:2D (2.6) BS04 MG N/A N/A P60405 39039256
    883621 8vty:2D (2.6) BS05 MG N/A N/A P60405 39039256
    883622 8vty:2D (2.6) BS06 MG N/A N/A P60405 39039256
    883623 8vty:2D (2.6) BS07 MG N/A N/A P60405 39039256
    883624 8vty:2D (2.6) BS08 MG N/A N/A P60405 39039256
    883625 8vty:2D (2.6) BS09 MG N/A N/A P60405 39039256
    883626 8vty:2D (2.6) BS10 MG N/A N/A P60405 39039256
    883627 8vty:2E (2.6) BS01 rna N/A N/A Q5SHN8 39039256
    883628 8vty:2E (2.6) BS02 MG N/A N/A Q5SHN8 39039256
    883629 8vty:2E (2.6) BS03 MG N/A N/A Q5SHN8 39039256
    883630 8vty:2F (2.6) BS01 rna N/A N/A Q5SHN9 39039256
    883631 8vty:2F (2.6) BS02 MG N/A N/A Q5SHN9 39039256
    883632 8vty:2F (2.6) BS03 MG N/A N/A Q5SHN9 39039256
    883633 8vty:2F (2.6) BS04 MG N/A N/A Q5SHN9 39039256
    883634 8vty:2F (2.6) BS05 MG N/A N/A Q5SHN9 39039256
    883635 8vty:2G (2.6) BS01 rna N/A N/A Q5SHQ0 39039256
    883636 8vty:2G (2.6) BS02 rna N/A N/A Q5SHQ0 39039256
    883637 8vty:2G (2.6) BS03 MG N/A N/A Q5SHQ0 39039256
    883638 8vty:2G (2.6) BS04 MG N/A N/A Q5SHQ0 39039256
    883639 8vty:2H (2.6) BS01 rna N/A N/A P0DOY8 39039256
    883640 8vty:2I (2.6) BS01 rna N/A N/A Q5SLQ1 39039256
    883641 8vty:2N (2.6) BS01 rna N/A N/A P60488 39039256
    883642 8vty:2O (2.6) BS01 rna N/A N/A Q5SHP8 39039256
    883643 8vty:2O (2.6) BS02 rna N/A N/A Q5SHP8 39039256
    883644 8vty:2P (2.6) BS01 rna N/A N/A Q5SHQ7 39039256
    883645 8vty:2Q (2.6) BS01 rna N/A N/A P60489 39039256
    883646 8vty:2Q (2.6) BS02 rna N/A N/A P60489 39039256
    883647 8vty:2Q (2.6) BS03 MG N/A N/A P60489 39039256
    883648 8vty:2Q (2.6) BS04 MG N/A N/A P60489 39039256
    883649 8vty:2R (2.6) BS01 rna N/A N/A Q9Z9H5 39039256
    883650 8vty:2S (2.6) BS01 rna N/A N/A Q5SHQ4 39039256
    883651 8vty:2S (2.6) BS02 rna N/A N/A Q5SHQ4 39039256
    883652 8vty:2T (2.6) BS01 rna N/A N/A P60490 39039256
    883653 8vty:2T (2.6) BS02 rna N/A N/A P60490 39039256
    883654 8vty:2U (2.6) BS01 rna N/A N/A P60491 39039256
    883655 8vty:2U (2.6) BS02 MG N/A N/A P60491 39039256
    883656 8vty:2V (2.6) BS01 rna N/A N/A P60492 39039256
    883657 8vty:2V (2.6) BS02 MG N/A N/A P60492 39039256
    883658 8vty:2V (2.6) BS03 MG N/A N/A P60492 39039256
    883659 8vty:2W (2.6) BS01 rna N/A N/A Q5SHP3 39039256
    883660 8vty:2W (2.6) BS02 MG N/A N/A Q5SHP3 39039256
    883661 8vty:2W (2.6) BS03 MG N/A N/A Q5SHP3 39039256
    883662 8vty:2X (2.6) BS01 rna N/A N/A Q5SHP0 39039256
    883663 8vty:2Y (2.6) BS01 rna N/A N/A Q5SHP9 39039256
    883664 8vty:2Y (2.6) BS02 ZN N/A N/A Q5SHP9 39039256
    883665 8vty:2Z (2.6) BS01 rna N/A N/A Q5SHZ1 39039256
    883666 8vty:2Z (2.6) BS02 rna N/A N/A Q5SHZ1 39039256
    883667 8vty:2b (2.6) BS01 rna N/A N/A P80371 39039256
    883668 8vty:2c (2.6) BS01 rna N/A N/A P80372 39039256
    883669 8vty:2d (2.6) BS01 rna N/A N/A P80373 39039256
    883670 8vty:2d (2.6) BS02 SF4 N/A N/A P80373 39039256
    883671 8vty:2e (2.6) BS01 rna N/A N/A Q5SHQ5 39039256
    883672 8vty:2f (2.6) BS01 rna N/A N/A Q5SLP8 39039256
    883673 8vty:2f (2.6) BS02 MG N/A N/A Q5SLP8 39039256
    883674 8vty:2f (2.6) BS03 MG N/A N/A Q5SLP8 39039256
    883675 8vty:2g (2.6) BS01 rna N/A N/A P17291 39039256
    883676 8vty:2h (2.6) BS01 rna N/A N/A P0DOY9 39039256
    883677 8vty:2i (2.6) BS01 rna N/A N/A P80374 39039256
    883678 8vty:2j (2.6) BS01 rna N/A N/A Q5SHN7 39039256
    883679 8vty:2j (2.6) BS02 MG N/A N/A Q5SHN7 39039256
    883680 8vty:2k (2.6) BS01 rna N/A N/A P80376 39039256
    883681 8vty:2k (2.6) BS02 MG N/A N/A P80376 39039256
    883682 8vty:2l (2.6) BS01 rna N/A N/A Q5SHN3 39039256
    883683 8vty:2l (2.6) BS02 MG N/A N/A Q5SHN3 39039256
    883684 8vty:2m (2.6) BS01 rna N/A N/A P80377 39039256
    883685 8vty:2n (2.6) BS01 rna N/A N/A P0DOY6 39039256
    883686 8vty:2n (2.6) BS02 ZN N/A N/A P0DOY6 39039256
    883687 8vty:2o (2.6) BS01 rna N/A N/A Q5SJ76 39039256
    883688 8vty:2o (2.6) BS02 rna N/A N/A Q5SJ76 39039256
    883689 8vty:2p (2.6) BS01 rna N/A N/A Q5SJH3 39039256
    883690 8vty:2q (2.6) BS01 rna N/A N/A P0DOY7 39039256
    883691 8vty:2r (2.6) BS01 rna N/A N/A Q5SLQ0 39039256
    883692 8vty:2s (2.6) BS01 rna N/A N/A Q5SHP2 39039256
    883693 8vty:2t (2.6) BS01 rna N/A N/A P80380 39039256
    883694 8vty:2t (2.6) BS02 MG N/A N/A P80380 39039256
    883695 8vty:2y (2.6) BS01 rna N/A N/A P0AD49 39039256
    883696 8vu0:A (2.64) BS01 rna N/A N/A O66738 39075051
    883697 8vu0:B (2.64) BS01 rna N/A N/A O66738 39075051
    883698 8vug:A (2.05) BS01 HEM N/A N/A P48775 39106326
    883699 8vug:A (2.05) BS02 ZIQ N/A N/A P48775 39106326
    883700 8vug:A (2.05) BS03 A1AD1 N/A N/A P48775 39106326
    883701 8vug:B (2.05) BS01 A1AD1 N/A N/A P48775 39106326
    883702 8vug:B (2.05) BS02 HEM N/A N/A P48775 39106326
    883703 8vug:B (2.05) BS03 ZIQ N/A N/A P48775 39106326
    883704 8vug:B (2.05) BS04 A1AD1 N/A N/A P48775 39106326
    883705 8vug:C (2.05) BS01 HEM N/A N/A P48775 39106326
    883706 8vug:C (2.05) BS02 ZIQ N/A N/A P48775 39106326
    883707 8vug:C (2.05) BS03 A1AD1 N/A N/A P48775 39106326
    883708 8vug:C (2.05) BS04 A1AD1 N/A N/A P48775 39106326
    883709 8vug:D (2.05) BS01 HEM N/A N/A P48775 39106326
    883710 8vug:D (2.05) BS02 ZIQ N/A N/A P48775 39106326
    883711 8vug:D (2.05) BS03 A1AD1 N/A N/A P48775 39106326
    883712 8vuw:A (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    883713 8vuw:A (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    883714 8vuw:B (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    883715 8vuw:B (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    883716 8vuw:C (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    883717 8vuw:C (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    883718 8vuw:D (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    883719 8vuw:D (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    883720 8vuw:E (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    883721 8vuw:E (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    883722 8vv3:A (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    883723 8vv3:B (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    883724 8vv3:C (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    883725 8vv3:D (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    883726 8vvl:L (1.8) BS01 CO N/A N/A N/A 39002130
    883727 8vw0:A (1.7) BS01 AMP 6.3.2.9 GO:0005515 ... P14900 N/A
    883728 8vw0:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883729 8vw0:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883730 8vw0:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883731 8vw0:A (1.7) BS05 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883732 8vw1:A (1.7) BS01 ADP 6.3.2.9 GO:0005515 ... P14900 N/A
    883733 8vw1:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883734 8vw1:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883735 8vw1:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883736 8vw2:A (1.95) BS01 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883737 8vw2:A (1.95) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883738 8vw2:A (1.95) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    883739 8vw2:A (1.95) BS04 ATP 6.3.2.9 GO:0005515 ... P14900 N/A
    883740 8vw2:A (1.95) BS05 MG 6.3.2.9 GO:0005515 ... P14900 N/A
    883741 8vw4:A (2.4) BS01 MG N/A N/A Q13191 38894924
    883742 8vw4:A (2.4) BS02 A1AEG N/A N/A Q13191 38894924
    883743 8vw4:A (2.4) BS03 A1AEG N/A N/A Q13191 38894924
    883744 8vw4:B (2.4) BS01 A1AEG N/A N/A Q13191 38894924
    883745 8vw4:B (2.4) BS02 MG N/A N/A Q13191 38894924
    883746 8vw4:B (2.4) BS03 A1AEG N/A N/A Q13191 38894924
    883747 8vw5:A (1.76) BS01 MG N/A N/A Q13191 38894924
    883748 8vw5:A (1.76) BS02 CA N/A N/A Q13191 38894924
    883749 8vw5:A (1.76) BS03 A1AD4 N/A N/A Q13191 38894924
    883750 8vw5:B (1.76) BS01 MG N/A N/A Q13191 38894924
    883751 8vw5:B (1.76) BS02 A1AD4 N/A N/A Q13191 38894924
    883752 8vw5:B (1.76) BS03 CA N/A N/A Q13191 38894924
    883753 8vx0:A (3.05) BS01 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    883754 8vx0:A (3.05) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    883755 8vx0:A (3.05) BS03 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    883756 8vxa:A (2.79) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    883757 8vxa:A (2.79) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    883758 8vxb:A (1.85) BS01 5I0 N/A N/A D8L9Z0 39246239
    883759 8vxc:A (2.93) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    883760 8vxc:A (2.93) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    883761 8vxd:A (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    883762 8vxd:B (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    883763 8vxe:A (1.85) BS01 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    883764 8vxe:A (1.85) BS02 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    883765 8vxf:A (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    883766 8vxf:B (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    883767 8vxu:A (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    883768 8vxu:B (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    883769 8vxu:C (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    883770 8vxu:C (2.29) BS02 16A ? GO:0005886 ... U2EQ00 38865266
    883771 8vxu:D (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    883772 8vxu:E (2.29) BS01 16A N/A N/A N/A 38865266
    883773 8vxy:B (3.19) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    883774 8vxy:B (3.19) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    883775 8vxy:B (3.19) BS03 ATP ? GO:0003676 ... A0A426EXV0 38464307
    883776 8vy3:B (2.98) BS01 SF4 N/A N/A P49643 N/A
    883777 8vy3:C (2.98) BS01 ZN N/A N/A P09884 N/A
    883778 8vy3:C (2.98) BS02 ZN N/A N/A P09884 N/A
    883779 8vy4:A (1.7) BS01 peptide N/A N/A N/A 38962811
    883780 8vy4:B (1.7) BS01 peptide N/A N/A N/A 38962811
    883781 8vy7:R (2.68) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    883782 8vy7:R (2.68) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    883783 8vy8:A (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    883784 8vy8:B (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    883785 8vy8:E (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    883786 8vy8:E (2.4) BS02 peptide ? GO:0005515 ... P60615 38347541
    883787 8vy8:G (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    883788 8vy8:G (2.4) BS02 peptide ? GO:0005515 ... P60615 38347541
    883789 8vy9:R (2.88) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    883790 8vy9:R (2.88) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    883791 8vyl:A (2.02) BS01 HEM N/A GO:0004601 ... P69905 38880764
    883792 8vyl:B (2.02) BS01 HEM N/A GO:0004601 ... P68871 38880764
    883793 8vyl:C (2.02) BS01 HEM N/A GO:0004601 ... P69905 38880764
    883794 8vyl:D (2.02) BS01 HEM N/A GO:0004601 ... P68871 38880764
    883795 8vyt:A (1.61) BS01 A1AHV ? N/A P03372 38830107
    883796 8vyt:B (1.61) BS01 A1AHV ? N/A P03372 38830107
    883797 8vyt:C (1.61) BS01 A1AHV ? N/A P03372 38830107
    883798 8vyt:D (1.61) BS01 A1AHV ? N/A P03372 38830107
    883799 8vyx:A (1.69) BS01 A1AHU ? N/A P03372 38830107
    883800 8vyx:B (1.69) BS01 A1AHU ? N/A P03372 38830107
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218