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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    883401 8vtx:2U (2.4) BS02 MG N/A N/A P60491 39039256
    883402 8vtx:2V (2.4) BS01 rna N/A N/A P60492 39039256
    883403 8vtx:2V (2.4) BS02 MG N/A N/A P60492 39039256
    883404 8vtx:2W (2.4) BS01 rna N/A N/A Q5SHP3 39039256
    883405 8vtx:2W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    883406 8vtx:2W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    883407 8vtx:2X (2.4) BS01 rna N/A N/A Q5SHP0 39039256
    883408 8vtx:2X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    883409 8vtx:2Y (2.4) BS01 rna N/A N/A Q5SHP9 39039256
    883410 8vtx:2Y (2.4) BS02 ZN N/A N/A Q5SHP9 39039256
    883411 8vtx:2Z (2.4) BS01 rna N/A N/A Q5SHZ1 39039256
    883412 8vtx:2Z (2.4) BS02 rna N/A N/A Q5SHZ1 39039256
    883413 8vtx:2Z (2.4) BS03 MG N/A N/A Q5SHZ1 39039256
    883414 8vtx:2b (2.4) BS01 rna N/A N/A P80371 39039256
    883415 8vtx:2c (2.4) BS01 rna N/A N/A P80372 39039256
    883416 8vtx:2d (2.4) BS01 rna N/A N/A P80373 39039256
    883417 8vtx:2d (2.4) BS02 MG N/A N/A P80373 39039256
    883418 8vtx:2d (2.4) BS03 SF4 N/A N/A P80373 39039256
    883419 8vtx:2e (2.4) BS01 rna N/A N/A Q5SHQ5 39039256
    883420 8vtx:2e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    883421 8vtx:2f (2.4) BS01 rna N/A N/A Q5SLP8 39039256
    883422 8vtx:2f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    883423 8vtx:2g (2.4) BS01 rna N/A N/A P17291 39039256
    883424 8vtx:2g (2.4) BS02 rna N/A N/A P17291 39039256
    883425 8vtx:2h (2.4) BS01 rna N/A N/A P0DOY9 39039256
    883426 8vtx:2i (2.4) BS01 rna N/A N/A P80374 39039256
    883427 8vtx:2i (2.4) BS02 rna N/A N/A P80374 39039256
    883428 8vtx:2j (2.4) BS01 rna N/A N/A Q5SHN7 39039256
    883429 8vtx:2k (2.4) BS01 rna N/A N/A P80376 39039256
    883430 8vtx:2k (2.4) BS02 MG N/A N/A P80376 39039256
    883431 8vtx:2l (2.4) BS01 rna N/A N/A Q5SHN3 39039256
    883432 8vtx:2l (2.4) BS02 MG N/A N/A Q5SHN3 39039256
    883433 8vtx:2l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    883434 8vtx:2l (2.4) BS04 MG N/A N/A Q5SHN3 39039256
    883435 8vtx:2m (2.4) BS01 rna N/A N/A P80377 39039256
    883436 8vtx:2m (2.4) BS02 rna N/A N/A P80377 39039256
    883437 8vtx:2m (2.4) BS03 rna N/A N/A P80377 39039256
    883438 8vtx:2n (2.4) BS01 rna N/A N/A P0DOY6 39039256
    883439 8vtx:2n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    883440 8vtx:2o (2.4) BS01 rna N/A N/A Q5SJ76 39039256
    883441 8vtx:2o (2.4) BS02 rna N/A N/A Q5SJ76 39039256
    883442 8vtx:2p (2.4) BS01 rna N/A N/A Q5SJH3 39039256
    883443 8vtx:2q (2.4) BS01 rna N/A N/A P0DOY7 39039256
    883444 8vtx:2q (2.4) BS02 MG N/A N/A P0DOY7 39039256
    883445 8vtx:2q (2.4) BS03 MG N/A N/A P0DOY7 39039256
    883446 8vtx:2r (2.4) BS01 rna N/A N/A Q5SLQ0 39039256
    883447 8vtx:2r (2.4) BS02 MG N/A N/A Q5SLQ0 39039256
    883448 8vtx:2s (2.4) BS01 rna N/A N/A Q5SHP2 39039256
    883449 8vtx:2t (2.4) BS01 rna N/A N/A P80380 39039256
    883450 8vtx:2t (2.4) BS02 MG N/A N/A P80380 39039256
    883451 8vty:10 (2.6) BS01 rna N/A N/A P60493 39039256
    883452 8vty:10 (2.6) BS02 rna N/A N/A P60493 39039256
    883453 8vty:10 (2.6) BS03 MG N/A N/A P60493 39039256
    883454 8vty:10 (2.6) BS04 MG N/A N/A P60493 39039256
    883455 8vty:10 (2.6) BS05 MG N/A N/A P60493 39039256
    883456 8vty:11 (2.6) BS01 rna N/A N/A P60494 39039256
    883457 8vty:11 (2.6) BS02 MG N/A N/A P60494 39039256
    883458 8vty:12 (2.6) BS01 rna N/A N/A Q5SHP6 39039256
    883459 8vty:13 (2.6) BS01 rna N/A N/A Q5SHQ6 39039256
    883460 8vty:13 (2.6) BS02 rna N/A N/A Q5SHQ6 39039256
    883461 8vty:13 (2.6) BS03 MG N/A N/A Q5SHQ6 39039256
    883462 8vty:13 (2.6) BS04 MG N/A N/A Q5SHQ6 39039256
    883463 8vty:14 (2.6) BS01 rna N/A N/A Q5SJE1 39039256
    883464 8vty:14 (2.6) BS02 ZN N/A N/A Q5SJE1 39039256
    883465 8vty:15 (2.6) BS01 rna N/A N/A P80339 39039256
    883466 8vty:15 (2.6) BS02 MG N/A N/A P80339 39039256
    883467 8vty:15 (2.6) BS03 MG N/A N/A P80339 39039256
    883468 8vty:15 (2.6) BS04 MG N/A N/A P80339 39039256
    883469 8vty:15 (2.6) BS05 MG N/A N/A P80339 39039256
    883470 8vty:15 (2.6) BS06 ZN N/A N/A P80339 39039256
    883471 8vty:16 (2.6) BS01 rna N/A N/A P35871 39039256
    883472 8vty:16 (2.6) BS02 ZN N/A N/A P35871 39039256
    883473 8vty:17 (2.6) BS01 rna N/A N/A P80340 39039256
    883474 8vty:17 (2.6) BS02 MG N/A N/A P80340 39039256
    883475 8vty:17 (2.6) BS03 MG N/A N/A P80340 39039256
    883476 8vty:17 (2.6) BS04 MG N/A N/A P80340 39039256
    883477 8vty:17 (2.6) BS05 MG N/A N/A P80340 39039256
    883478 8vty:18 (2.6) BS01 rna N/A N/A Q5SKU1 39039256
    883479 8vty:18 (2.6) BS02 MG N/A N/A Q5SKU1 39039256
    883480 8vty:18 (2.6) BS03 MG N/A N/A Q5SKU1 39039256
    883481 8vty:19 (2.6) BS01 rna N/A N/A Q5SHR2 39039256
    883482 8vty:19 (2.6) BS02 ZN N/A N/A Q5SHR2 39039256
    883483 8vty:1D (2.6) BS01 rna N/A N/A P60405 39039256
    883484 8vty:1D (2.6) BS02 rna N/A N/A P60405 39039256
    883485 8vty:1D (2.6) BS03 MG N/A N/A P60405 39039256
    883486 8vty:1D (2.6) BS04 MG N/A N/A P60405 39039256
    883487 8vty:1D (2.6) BS05 MG N/A N/A P60405 39039256
    883488 8vty:1D (2.6) BS06 MG N/A N/A P60405 39039256
    883489 8vty:1D (2.6) BS07 MG N/A N/A P60405 39039256
    883490 8vty:1D (2.6) BS08 MG N/A N/A P60405 39039256
    883491 8vty:1D (2.6) BS09 MG N/A N/A P60405 39039256
    883492 8vty:1D (2.6) BS10 MG N/A N/A P60405 39039256
    883493 8vty:1D (2.6) BS11 MG N/A N/A P60405 39039256
    883494 8vty:1D (2.6) BS12 MG N/A N/A P60405 39039256
    883495 8vty:1D (2.6) BS13 MG N/A N/A P60405 39039256
    883496 8vty:1D (2.6) BS14 MG N/A N/A P60405 39039256
    883497 8vty:1E (2.6) BS01 rna N/A N/A Q5SHN8 39039256
    883498 8vty:1E (2.6) BS02 MG N/A N/A Q5SHN8 39039256
    883499 8vty:1E (2.6) BS03 MG N/A N/A Q5SHN8 39039256
    883500 8vty:1E (2.6) BS04 MG N/A N/A Q5SHN8 39039256
    883501 8vty:1E (2.6) BS05 MG N/A N/A Q5SHN8 39039256
    883502 8vty:1F (2.6) BS01 rna N/A N/A Q5SHN9 39039256
    883503 8vty:1F (2.6) BS02 MG N/A N/A Q5SHN9 39039256
    883504 8vty:1F (2.6) BS03 MG N/A N/A Q5SHN9 39039256
    883505 8vty:1F (2.6) BS04 MG N/A N/A Q5SHN9 39039256
    883506 8vty:1F (2.6) BS05 MG N/A N/A Q5SHN9 39039256
    883507 8vty:1F (2.6) BS06 MG N/A N/A Q5SHN9 39039256
    883508 8vty:1F (2.6) BS07 MG N/A N/A Q5SHN9 39039256
    883509 8vty:1F (2.6) BS08 MG N/A N/A Q5SHN9 39039256
    883510 8vty:1F (2.6) BS09 MG N/A N/A Q5SHN9 39039256
    883511 8vty:1F (2.6) BS10 MG N/A N/A Q5SHN9 39039256
    883512 8vty:1F (2.6) BS11 MG N/A N/A Q5SHN9 39039256
    883513 8vty:1F (2.6) BS12 MG N/A N/A Q5SHN9 39039256
    883514 8vty:1F (2.6) BS13 MG N/A N/A Q5SHN9 39039256
    883515 8vty:1F (2.6) BS14 MG N/A N/A Q5SHN9 39039256
    883516 8vty:1F (2.6) BS15 ARG N/A N/A Q5SHN9 39039256
    883517 8vty:1G (2.6) BS01 rna N/A N/A Q5SHQ0 39039256
    883518 8vty:1G (2.6) BS02 rna N/A N/A Q5SHQ0 39039256
    883519 8vty:1G (2.6) BS03 MG N/A N/A Q5SHQ0 39039256
    883520 8vty:1G (2.6) BS04 MG N/A N/A Q5SHQ0 39039256
    883521 8vty:1H (2.6) BS01 rna N/A N/A P0DOY8 39039256
    883522 8vty:1I (2.6) BS01 rna N/A N/A Q5SLQ1 39039256
    883523 8vty:1N (2.6) BS01 rna N/A N/A P60488 39039256
    883524 8vty:1N (2.6) BS02 MG N/A N/A P60488 39039256
    883525 8vty:1N (2.6) BS03 MG N/A N/A P60488 39039256
    883526 8vty:1N (2.6) BS04 MG N/A N/A P60488 39039256
    883527 8vty:1O (2.6) BS01 rna N/A N/A Q5SHP8 39039256
    883528 8vty:1O (2.6) BS02 rna N/A N/A Q5SHP8 39039256
    883529 8vty:1O (2.6) BS03 MG N/A N/A Q5SHP8 39039256
    883530 8vty:1P (2.6) BS01 rna N/A N/A Q5SHQ7 39039256
    883531 8vty:1P (2.6) BS02 MG N/A N/A Q5SHQ7 39039256
    883532 8vty:1P (2.6) BS03 MG N/A N/A Q5SHQ7 39039256
    883533 8vty:1Q (2.6) BS01 rna N/A N/A P60489 39039256
    883534 8vty:1Q (2.6) BS02 rna N/A N/A P60489 39039256
    883535 8vty:1Q (2.6) BS03 MG N/A N/A P60489 39039256
    883536 8vty:1Q (2.6) BS04 MG N/A N/A P60489 39039256
    883537 8vty:1Q (2.6) BS05 MG N/A N/A P60489 39039256
    883538 8vty:1R (2.6) BS01 rna N/A N/A Q9Z9H5 39039256
    883539 8vty:1R (2.6) BS02 MG N/A N/A Q9Z9H5 39039256
    883540 8vty:1R (2.6) BS03 MG N/A N/A Q9Z9H5 39039256
    883541 8vty:1R (2.6) BS04 MG N/A N/A Q9Z9H5 39039256
    883542 8vty:1R (2.6) BS05 MG N/A N/A Q9Z9H5 39039256
    883543 8vty:1S (2.6) BS01 rna N/A N/A Q5SHQ4 39039256
    883544 8vty:1S (2.6) BS02 rna N/A N/A Q5SHQ4 39039256
    883545 8vty:1T (2.6) BS01 rna N/A N/A P60490 39039256
    883546 8vty:1T (2.6) BS02 rna N/A N/A P60490 39039256
    883547 8vty:1U (2.6) BS01 rna N/A N/A P60491 39039256
    883548 8vty:1U (2.6) BS02 MG N/A N/A P60491 39039256
    883549 8vty:1U (2.6) BS03 MG N/A N/A P60491 39039256
    883550 8vty:1U (2.6) BS04 MG N/A N/A P60491 39039256
    883551 8vty:1U (2.6) BS05 MG N/A N/A P60491 39039256
    883552 8vty:1U (2.6) BS06 MG N/A N/A P60491 39039256
    883553 8vty:1U (2.6) BS07 MG N/A N/A P60491 39039256
    883554 8vty:1V (2.6) BS01 rna N/A N/A P60492 39039256
    883555 8vty:1V (2.6) BS02 MG N/A N/A P60492 39039256
    883556 8vty:1V (2.6) BS03 MG N/A N/A P60492 39039256
    883557 8vty:1V (2.6) BS04 MG N/A N/A P60492 39039256
    883558 8vty:1W (2.6) BS01 rna N/A N/A Q5SHP3 39039256
    883559 8vty:1W (2.6) BS02 MG N/A N/A Q5SHP3 39039256
    883560 8vty:1X (2.6) BS01 rna N/A N/A Q5SHP0 39039256
    883561 8vty:1Y (2.6) BS01 rna N/A N/A Q5SHP9 39039256
    883562 8vty:1Y (2.6) BS02 ZN N/A N/A Q5SHP9 39039256
    883563 8vty:1Z (2.6) BS01 rna N/A N/A Q5SHZ1 39039256
    883564 8vty:1Z (2.6) BS02 rna N/A N/A Q5SHZ1 39039256
    883565 8vty:1b (2.6) BS01 rna N/A N/A P80371 39039256
    883566 8vty:1b (2.6) BS02 MG N/A N/A P80371 39039256
    883567 8vty:1c (2.6) BS01 rna N/A N/A P80372 39039256
    883568 8vty:1d (2.6) BS01 rna N/A N/A P80373 39039256
    883569 8vty:1d (2.6) BS02 SF4 N/A N/A P80373 39039256
    883570 8vty:1e (2.6) BS01 rna N/A N/A Q5SHQ5 39039256
    883571 8vty:1e (2.6) BS02 MG N/A N/A Q5SHQ5 39039256
    883572 8vty:1f (2.6) BS01 rna N/A N/A Q5SLP8 39039256
    883573 8vty:1g (2.6) BS01 rna N/A N/A P17291 39039256
    883574 8vty:1h (2.6) BS01 rna N/A N/A P0DOY9 39039256
    883575 8vty:1i (2.6) BS01 rna N/A N/A P80374 39039256
    883576 8vty:1j (2.6) BS01 rna N/A N/A Q5SHN7 39039256
    883577 8vty:1k (2.6) BS01 rna N/A N/A P80376 39039256
    883578 8vty:1k (2.6) BS02 MG N/A N/A P80376 39039256
    883579 8vty:1l (2.6) BS01 rna N/A N/A Q5SHN3 39039256
    883580 8vty:1l (2.6) BS02 MG N/A N/A Q5SHN3 39039256
    883581 8vty:1m (2.6) BS01 rna N/A N/A P80377 39039256
    883582 8vty:1m (2.6) BS02 MG N/A N/A P80377 39039256
    883583 8vty:1m (2.6) BS03 MG N/A N/A P80377 39039256
    883584 8vty:1n (2.6) BS01 rna N/A N/A P0DOY6 39039256
    883585 8vty:1n (2.6) BS02 MG N/A N/A P0DOY6 39039256
    883586 8vty:1n (2.6) BS03 ZN N/A N/A P0DOY6 39039256
    883587 8vty:1o (2.6) BS01 rna N/A N/A Q5SJ76 39039256
    883588 8vty:1o (2.6) BS02 rna N/A N/A Q5SJ76 39039256
    883589 8vty:1p (2.6) BS01 rna N/A N/A Q5SJH3 39039256
    883590 8vty:1q (2.6) BS01 rna N/A N/A P0DOY7 39039256
    883591 8vty:1r (2.6) BS01 rna N/A N/A Q5SLQ0 39039256
    883592 8vty:1s (2.6) BS01 rna N/A N/A Q5SHP2 39039256
    883593 8vty:1t (2.6) BS01 rna N/A N/A P80380 39039256
    883594 8vty:1t (2.6) BS02 MG N/A N/A P80380 39039256
    883595 8vty:1y (2.6) BS01 rna N/A N/A P0AD49 39039256
    883596 8vty:1y (2.6) BS02 MG N/A N/A P0AD49 39039256
    883597 8vty:1y (2.6) BS03 MG N/A N/A P0AD49 39039256
    883598 8vty:20 (2.6) BS01 rna N/A N/A P60493 39039256
    883599 8vty:20 (2.6) BS02 rna N/A N/A P60493 39039256
    883600 8vty:21 (2.6) BS01 rna N/A N/A P60494 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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