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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    883201 8vtx:17 (2.4) BS03 MG N/A N/A P80340 39039256
    883202 8vtx:17 (2.4) BS04 MG N/A N/A P80340 39039256
    883203 8vtx:18 (2.4) BS01 rna N/A N/A Q5SKU1 39039256
    883204 8vtx:18 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    883205 8vtx:18 (2.4) BS03 MG N/A N/A Q5SKU1 39039256
    883206 8vtx:19 (2.4) BS01 rna N/A N/A Q5SHR2 39039256
    883207 8vtx:19 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    883208 8vtx:1D (2.4) BS01 rna N/A N/A P60405 39039256
    883209 8vtx:1D (2.4) BS02 rna N/A N/A P60405 39039256
    883210 8vtx:1D (2.4) BS03 MG N/A N/A P60405 39039256
    883211 8vtx:1D (2.4) BS04 MG N/A N/A P60405 39039256
    883212 8vtx:1D (2.4) BS05 MG N/A N/A P60405 39039256
    883213 8vtx:1D (2.4) BS06 MG N/A N/A P60405 39039256
    883214 8vtx:1D (2.4) BS07 MG N/A N/A P60405 39039256
    883215 8vtx:1D (2.4) BS08 MG N/A N/A P60405 39039256
    883216 8vtx:1D (2.4) BS09 MG N/A N/A P60405 39039256
    883217 8vtx:1D (2.4) BS10 MG N/A N/A P60405 39039256
    883218 8vtx:1D (2.4) BS11 MG N/A N/A P60405 39039256
    883219 8vtx:1D (2.4) BS12 MG N/A N/A P60405 39039256
    883220 8vtx:1E (2.4) BS01 rna N/A N/A Q5SHN8 39039256
    883221 8vtx:1E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    883222 8vtx:1E (2.4) BS03 MG N/A N/A Q5SHN8 39039256
    883223 8vtx:1E (2.4) BS04 MG N/A N/A Q5SHN8 39039256
    883224 8vtx:1E (2.4) BS05 MG N/A N/A Q5SHN8 39039256
    883225 8vtx:1F (2.4) BS01 rna N/A N/A Q5SHN9 39039256
    883226 8vtx:1F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    883227 8vtx:1F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    883228 8vtx:1F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    883229 8vtx:1F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    883230 8vtx:1F (2.4) BS06 MG N/A N/A Q5SHN9 39039256
    883231 8vtx:1F (2.4) BS07 MG N/A N/A Q5SHN9 39039256
    883232 8vtx:1F (2.4) BS08 MG N/A N/A Q5SHN9 39039256
    883233 8vtx:1F (2.4) BS09 MG N/A N/A Q5SHN9 39039256
    883234 8vtx:1F (2.4) BS10 MG N/A N/A Q5SHN9 39039256
    883235 8vtx:1F (2.4) BS11 MG N/A N/A Q5SHN9 39039256
    883236 8vtx:1G (2.4) BS01 rna N/A N/A Q5SHQ0 39039256
    883237 8vtx:1G (2.4) BS02 rna N/A N/A Q5SHQ0 39039256
    883238 8vtx:1G (2.4) BS03 rna N/A N/A Q5SHQ0 39039256
    883239 8vtx:1G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    883240 8vtx:1H (2.4) BS01 rna N/A N/A P0DOY8 39039256
    883241 8vtx:1I (2.4) BS01 rna N/A N/A Q5SLQ1 39039256
    883242 8vtx:1I (2.4) BS02 MG N/A N/A Q5SLQ1 39039256
    883243 8vtx:1N (2.4) BS01 rna N/A N/A P60488 39039256
    883244 8vtx:1N (2.4) BS02 MG N/A N/A P60488 39039256
    883245 8vtx:1N (2.4) BS03 MG N/A N/A P60488 39039256
    883246 8vtx:1N (2.4) BS04 MG N/A N/A P60488 39039256
    883247 8vtx:1O (2.4) BS01 rna N/A N/A Q5SHP8 39039256
    883248 8vtx:1O (2.4) BS02 rna N/A N/A Q5SHP8 39039256
    883249 8vtx:1O (2.4) BS03 MG N/A N/A Q5SHP8 39039256
    883250 8vtx:1O (2.4) BS04 MG N/A N/A Q5SHP8 39039256
    883251 8vtx:1P (2.4) BS01 rna N/A N/A Q5SHQ7 39039256
    883252 8vtx:1P (2.4) BS02 MG N/A N/A Q5SHQ7 39039256
    883253 8vtx:1P (2.4) BS03 MG N/A N/A Q5SHQ7 39039256
    883254 8vtx:1P (2.4) BS04 MG N/A N/A Q5SHQ7 39039256
    883255 8vtx:1P (2.4) BS05 MG N/A N/A Q5SHQ7 39039256
    883256 8vtx:1P (2.4) BS06 MG N/A N/A Q5SHQ7 39039256
    883257 8vtx:1Q (2.4) BS01 rna N/A N/A P60489 39039256
    883258 8vtx:1Q (2.4) BS02 rna N/A N/A P60489 39039256
    883259 8vtx:1Q (2.4) BS03 rna N/A N/A P60489 39039256
    883260 8vtx:1Q (2.4) BS04 rna N/A N/A P60489 39039256
    883261 8vtx:1Q (2.4) BS05 MG N/A N/A P60489 39039256
    883262 8vtx:1Q (2.4) BS06 MG N/A N/A P60489 39039256
    883263 8vtx:1Q (2.4) BS07 MG N/A N/A P60489 39039256
    883264 8vtx:1Q (2.4) BS08 MG N/A N/A P60489 39039256
    883265 8vtx:1Q (2.4) BS09 MG N/A N/A P60489 39039256
    883266 8vtx:1R (2.4) BS01 rna N/A N/A Q9Z9H5 39039256
    883267 8vtx:1R (2.4) BS02 MG N/A N/A Q9Z9H5 39039256
    883268 8vtx:1R (2.4) BS03 MG N/A N/A Q9Z9H5 39039256
    883269 8vtx:1R (2.4) BS04 MG N/A N/A Q9Z9H5 39039256
    883270 8vtx:1S (2.4) BS01 rna N/A N/A Q5SHQ4 39039256
    883271 8vtx:1S (2.4) BS02 rna N/A N/A Q5SHQ4 39039256
    883272 8vtx:1S (2.4) BS03 MG N/A N/A Q5SHQ4 39039256
    883273 8vtx:1S (2.4) BS04 MG N/A N/A Q5SHQ4 39039256
    883274 8vtx:1T (2.4) BS01 rna N/A N/A P60490 39039256
    883275 8vtx:1T (2.4) BS02 rna N/A N/A P60490 39039256
    883276 8vtx:1U (2.4) BS01 rna N/A N/A P60491 39039256
    883277 8vtx:1U (2.4) BS02 MG N/A N/A P60491 39039256
    883278 8vtx:1U (2.4) BS03 MG N/A N/A P60491 39039256
    883279 8vtx:1U (2.4) BS04 MG N/A N/A P60491 39039256
    883280 8vtx:1U (2.4) BS05 MG N/A N/A P60491 39039256
    883281 8vtx:1U (2.4) BS06 MG N/A N/A P60491 39039256
    883282 8vtx:1U (2.4) BS07 MG N/A N/A P60491 39039256
    883283 8vtx:1U (2.4) BS08 MG N/A N/A P60491 39039256
    883284 8vtx:1U (2.4) BS09 MG N/A N/A P60491 39039256
    883285 8vtx:1V (2.4) BS01 rna N/A N/A P60492 39039256
    883286 8vtx:1V (2.4) BS02 MG N/A N/A P60492 39039256
    883287 8vtx:1V (2.4) BS03 MG N/A N/A P60492 39039256
    883288 8vtx:1V (2.4) BS04 MG N/A N/A P60492 39039256
    883289 8vtx:1V (2.4) BS05 MG N/A N/A P60492 39039256
    883290 8vtx:1V (2.4) BS06 MG N/A N/A P60492 39039256
    883291 8vtx:1V (2.4) BS07 MG N/A N/A P60492 39039256
    883292 8vtx:1W (2.4) BS01 rna N/A N/A Q5SHP3 39039256
    883293 8vtx:1W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    883294 8vtx:1W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    883295 8vtx:1W (2.4) BS04 MG N/A N/A Q5SHP3 39039256
    883296 8vtx:1W (2.4) BS05 MG N/A N/A Q5SHP3 39039256
    883297 8vtx:1W (2.4) BS06 MG N/A N/A Q5SHP3 39039256
    883298 8vtx:1X (2.4) BS01 rna N/A N/A Q5SHP0 39039256
    883299 8vtx:1X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    883300 8vtx:1X (2.4) BS03 MG N/A N/A Q5SHP0 39039256
    883301 8vtx:1X (2.4) BS04 MG N/A N/A Q5SHP0 39039256
    883302 8vtx:1X (2.4) BS05 MG N/A N/A Q5SHP0 39039256
    883303 8vtx:1Y (2.4) BS01 rna N/A N/A Q5SHP9 39039256
    883304 8vtx:1Y (2.4) BS02 MG N/A N/A Q5SHP9 39039256
    883305 8vtx:1Y (2.4) BS03 ZN N/A N/A Q5SHP9 39039256
    883306 8vtx:1Z (2.4) BS01 rna N/A N/A Q5SHZ1 39039256
    883307 8vtx:1Z (2.4) BS02 rna N/A N/A Q5SHZ1 39039256
    883308 8vtx:1Z (2.4) BS03 MG N/A N/A Q5SHZ1 39039256
    883309 8vtx:1b (2.4) BS01 rna N/A N/A P80371 39039256
    883310 8vtx:1c (2.4) BS01 rna N/A N/A P80372 39039256
    883311 8vtx:1d (2.4) BS01 rna N/A N/A P80373 39039256
    883312 8vtx:1d (2.4) BS02 SF4 N/A N/A P80373 39039256
    883313 8vtx:1e (2.4) BS01 rna N/A N/A Q5SHQ5 39039256
    883314 8vtx:1e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    883315 8vtx:1e (2.4) BS03 MG N/A N/A Q5SHQ5 39039256
    883316 8vtx:1f (2.4) BS01 rna N/A N/A Q5SLP8 39039256
    883317 8vtx:1f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    883318 8vtx:1g (2.4) BS01 rna N/A N/A P17291 39039256
    883319 8vtx:1g (2.4) BS02 rna N/A N/A P17291 39039256
    883320 8vtx:1h (2.4) BS01 rna N/A N/A P0DOY9 39039256
    883321 8vtx:1i (2.4) BS01 rna N/A N/A P80374 39039256
    883322 8vtx:1i (2.4) BS02 rna N/A N/A P80374 39039256
    883323 8vtx:1j (2.4) BS01 rna N/A N/A Q5SHN7 39039256
    883324 8vtx:1k (2.4) BS01 rna N/A N/A P80376 39039256
    883325 8vtx:1k (2.4) BS02 MG N/A N/A P80376 39039256
    883326 8vtx:1l (2.4) BS01 rna N/A N/A Q5SHN3 39039256
    883327 8vtx:1l (2.4) BS02 rna N/A N/A Q5SHN3 39039256
    883328 8vtx:1l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    883329 8vtx:1m (2.4) BS01 rna N/A N/A P80377 39039256
    883330 8vtx:1m (2.4) BS02 rna N/A N/A P80377 39039256
    883331 8vtx:1m (2.4) BS03 rna N/A N/A P80377 39039256
    883332 8vtx:1m (2.4) BS04 MG N/A N/A P80377 39039256
    883333 8vtx:1n (2.4) BS01 rna N/A N/A P0DOY6 39039256
    883334 8vtx:1n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    883335 8vtx:1o (2.4) BS01 rna N/A N/A Q5SJ76 39039256
    883336 8vtx:1o (2.4) BS02 rna N/A N/A Q5SJ76 39039256
    883337 8vtx:1p (2.4) BS01 rna N/A N/A Q5SJH3 39039256
    883338 8vtx:1q (2.4) BS01 rna N/A N/A P0DOY7 39039256
    883339 8vtx:1r (2.4) BS01 rna N/A N/A Q5SLQ0 39039256
    883340 8vtx:1s (2.4) BS01 rna N/A N/A Q5SHP2 39039256
    883341 8vtx:1t (2.4) BS01 rna N/A N/A P80380 39039256
    883342 8vtx:1t (2.4) BS02 MG N/A N/A P80380 39039256
    883343 8vtx:20 (2.4) BS01 rna N/A N/A P60493 39039256
    883344 8vtx:20 (2.4) BS02 rna N/A N/A P60493 39039256
    883345 8vtx:20 (2.4) BS03 rna N/A N/A P60493 39039256
    883346 8vtx:21 (2.4) BS01 rna N/A N/A P60494 39039256
    883347 8vtx:21 (2.4) BS02 rna N/A N/A P60494 39039256
    883348 8vtx:22 (2.4) BS01 rna N/A N/A Q5SHP6 39039256
    883349 8vtx:23 (2.4) BS01 rna N/A N/A Q5SHQ6 39039256
    883350 8vtx:23 (2.4) BS02 rna N/A N/A Q5SHQ6 39039256
    883351 8vtx:23 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    883352 8vtx:24 (2.4) BS01 rna N/A N/A Q5SJE1 39039256
    883353 8vtx:24 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    883354 8vtx:25 (2.4) BS01 rna N/A N/A P80339 39039256
    883355 8vtx:25 (2.4) BS02 ZN N/A N/A P80339 39039256
    883356 8vtx:26 (2.4) BS01 rna N/A N/A P35871 39039256
    883357 8vtx:26 (2.4) BS02 MG N/A N/A P35871 39039256
    883358 8vtx:26 (2.4) BS03 ZN N/A N/A P35871 39039256
    883359 8vtx:27 (2.4) BS01 rna N/A N/A P80340 39039256
    883360 8vtx:27 (2.4) BS02 MG N/A N/A P80340 39039256
    883361 8vtx:27 (2.4) BS03 MG N/A N/A P80340 39039256
    883362 8vtx:28 (2.4) BS01 rna N/A N/A Q5SKU1 39039256
    883363 8vtx:28 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    883364 8vtx:29 (2.4) BS01 rna N/A N/A Q5SHR2 39039256
    883365 8vtx:29 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    883366 8vtx:2D (2.4) BS01 rna N/A N/A P60405 39039256
    883367 8vtx:2D (2.4) BS02 rna N/A N/A P60405 39039256
    883368 8vtx:2D (2.4) BS03 MG N/A N/A P60405 39039256
    883369 8vtx:2D (2.4) BS04 MG N/A N/A P60405 39039256
    883370 8vtx:2D (2.4) BS05 MG N/A N/A P60405 39039256
    883371 8vtx:2E (2.4) BS01 rna N/A N/A Q5SHN8 39039256
    883372 8vtx:2E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    883373 8vtx:2F (2.4) BS01 rna N/A N/A Q5SHN9 39039256
    883374 8vtx:2F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    883375 8vtx:2F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    883376 8vtx:2F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    883377 8vtx:2F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    883378 8vtx:2G (2.4) BS01 rna N/A N/A Q5SHQ0 39039256
    883379 8vtx:2G (2.4) BS02 rna N/A N/A Q5SHQ0 39039256
    883380 8vtx:2G (2.4) BS03 rna N/A N/A Q5SHQ0 39039256
    883381 8vtx:2G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    883382 8vtx:2H (2.4) BS01 rna N/A N/A P0DOY8 39039256
    883383 8vtx:2I (2.4) BS01 rna N/A N/A Q5SLQ1 39039256
    883384 8vtx:2N (2.4) BS01 rna N/A N/A P60488 39039256
    883385 8vtx:2O (2.4) BS01 rna N/A N/A Q5SHP8 39039256
    883386 8vtx:2O (2.4) BS02 rna N/A N/A Q5SHP8 39039256
    883387 8vtx:2P (2.4) BS01 rna N/A N/A Q5SHQ7 39039256
    883388 8vtx:2Q (2.4) BS01 rna N/A N/A P60489 39039256
    883389 8vtx:2Q (2.4) BS02 rna N/A N/A P60489 39039256
    883390 8vtx:2Q (2.4) BS03 rna N/A N/A P60489 39039256
    883391 8vtx:2Q (2.4) BS04 rna N/A N/A P60489 39039256
    883392 8vtx:2Q (2.4) BS05 MG N/A N/A P60489 39039256
    883393 8vtx:2Q (2.4) BS06 MG N/A N/A P60489 39039256
    883394 8vtx:2R (2.4) BS01 rna N/A N/A Q9Z9H5 39039256
    883395 8vtx:2S (2.4) BS01 rna N/A N/A Q5SHQ4 39039256
    883396 8vtx:2S (2.4) BS02 rna N/A N/A Q5SHQ4 39039256
    883397 8vtx:2T (2.4) BS01 rna N/A N/A P60490 39039256
    883398 8vtx:2T (2.4) BS02 rna N/A N/A P60490 39039256
    883399 8vtx:2T (2.4) BS03 MG N/A N/A P60490 39039256
    883400 8vtx:2U (2.4) BS01 rna N/A N/A P60491 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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