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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    883001 8vtw:1G (2.35) BS03 MG N/A N/A Q5SHQ0 39039256
    883002 8vtw:1G (2.35) BS04 MG N/A N/A Q5SHQ0 39039256
    883003 8vtw:1G (2.35) BS05 MG N/A N/A Q5SHQ0 39039256
    883004 8vtw:1H (2.35) BS01 rna N/A N/A P0DOY8 39039256
    883005 8vtw:1I (2.35) BS01 rna N/A N/A Q5SLQ1 39039256
    883006 8vtw:1N (2.35) BS01 rna N/A N/A P60488 39039256
    883007 8vtw:1N (2.35) BS02 MG N/A N/A P60488 39039256
    883008 8vtw:1N (2.35) BS03 MG N/A N/A P60488 39039256
    883009 8vtw:1O (2.35) BS01 rna N/A N/A Q5SHP8 39039256
    883010 8vtw:1O (2.35) BS02 rna N/A N/A Q5SHP8 39039256
    883011 8vtw:1P (2.35) BS01 rna N/A N/A Q5SHQ7 39039256
    883012 8vtw:1P (2.35) BS02 MG N/A N/A Q5SHQ7 39039256
    883013 8vtw:1P (2.35) BS03 MG N/A N/A Q5SHQ7 39039256
    883014 8vtw:1Q (2.35) BS01 rna N/A N/A P60489 39039256
    883015 8vtw:1Q (2.35) BS02 rna N/A N/A P60489 39039256
    883016 8vtw:1Q (2.35) BS03 MG N/A N/A P60489 39039256
    883017 8vtw:1Q (2.35) BS04 MG N/A N/A P60489 39039256
    883018 8vtw:1Q (2.35) BS05 MG N/A N/A P60489 39039256
    883019 8vtw:1Q (2.35) BS06 MG N/A N/A P60489 39039256
    883020 8vtw:1R (2.35) BS01 rna N/A N/A Q9Z9H5 39039256
    883021 8vtw:1R (2.35) BS02 MG N/A N/A Q9Z9H5 39039256
    883022 8vtw:1R (2.35) BS03 MG N/A N/A Q9Z9H5 39039256
    883023 8vtw:1R (2.35) BS04 MG N/A N/A Q9Z9H5 39039256
    883024 8vtw:1S (2.35) BS01 rna N/A N/A Q5SHQ4 39039256
    883025 8vtw:1S (2.35) BS02 rna N/A N/A Q5SHQ4 39039256
    883026 8vtw:1T (2.35) BS01 rna N/A N/A P60490 39039256
    883027 8vtw:1T (2.35) BS02 rna N/A N/A P60490 39039256
    883028 8vtw:1U (2.35) BS01 rna N/A N/A P60491 39039256
    883029 8vtw:1U (2.35) BS02 MG N/A N/A P60491 39039256
    883030 8vtw:1U (2.35) BS03 MG N/A N/A P60491 39039256
    883031 8vtw:1U (2.35) BS04 MG N/A N/A P60491 39039256
    883032 8vtw:1U (2.35) BS05 MG N/A N/A P60491 39039256
    883033 8vtw:1V (2.35) BS01 rna N/A N/A P60492 39039256
    883034 8vtw:1V (2.35) BS02 MG N/A N/A P60492 39039256
    883035 8vtw:1V (2.35) BS03 MG N/A N/A P60492 39039256
    883036 8vtw:1V (2.35) BS04 MG N/A N/A P60492 39039256
    883037 8vtw:1V (2.35) BS05 MG N/A N/A P60492 39039256
    883038 8vtw:1W (2.35) BS01 rna N/A N/A Q5SHP3 39039256
    883039 8vtw:1W (2.35) BS02 MG N/A N/A Q5SHP3 39039256
    883040 8vtw:1X (2.35) BS01 rna N/A N/A Q5SHP0 39039256
    883041 8vtw:1Y (2.35) BS01 rna N/A N/A Q5SHP9 39039256
    883042 8vtw:1Y (2.35) BS02 ZN N/A N/A Q5SHP9 39039256
    883043 8vtw:1Z (2.35) BS01 rna N/A N/A Q5SHZ1 39039256
    883044 8vtw:1Z (2.35) BS02 rna N/A N/A Q5SHZ1 39039256
    883045 8vtw:1b (2.35) BS01 rna N/A N/A P80371 39039256
    883046 8vtw:1b (2.35) BS02 MG N/A N/A P80371 39039256
    883047 8vtw:1c (2.35) BS01 rna N/A N/A P80372 39039256
    883048 8vtw:1d (2.35) BS01 rna N/A N/A P80373 39039256
    883049 8vtw:1d (2.35) BS02 MG N/A N/A P80373 39039256
    883050 8vtw:1d (2.35) BS03 SF4 N/A N/A P80373 39039256
    883051 8vtw:1e (2.35) BS01 rna N/A N/A Q5SHQ5 39039256
    883052 8vtw:1e (2.35) BS02 MG N/A N/A Q5SHQ5 39039256
    883053 8vtw:1f (2.35) BS01 rna N/A N/A Q5SLP8 39039256
    883054 8vtw:1f (2.35) BS02 MG N/A N/A Q5SLP8 39039256
    883055 8vtw:1g (2.35) BS01 rna N/A N/A P17291 39039256
    883056 8vtw:1h (2.35) BS01 rna N/A N/A P0DOY9 39039256
    883057 8vtw:1i (2.35) BS01 rna N/A N/A P80374 39039256
    883058 8vtw:1j (2.35) BS01 rna N/A N/A Q5SHN7 39039256
    883059 8vtw:1k (2.35) BS01 rna N/A N/A P80376 39039256
    883060 8vtw:1k (2.35) BS02 MG N/A N/A P80376 39039256
    883061 8vtw:1l (2.35) BS01 rna N/A N/A Q5SHN3 39039256
    883062 8vtw:1l (2.35) BS02 MG N/A N/A Q5SHN3 39039256
    883063 8vtw:1m (2.35) BS01 rna N/A N/A P80377 39039256
    883064 8vtw:1m (2.35) BS02 rna N/A N/A P80377 39039256
    883065 8vtw:1m (2.35) BS03 MG N/A N/A P80377 39039256
    883066 8vtw:1n (2.35) BS01 rna N/A N/A P0DOY6 39039256
    883067 8vtw:1n (2.35) BS02 ZN N/A N/A P0DOY6 39039256
    883068 8vtw:1o (2.35) BS01 rna N/A N/A Q5SJ76 39039256
    883069 8vtw:1o (2.35) BS02 rna N/A N/A Q5SJ76 39039256
    883070 8vtw:1p (2.35) BS01 rna N/A N/A Q5SJH3 39039256
    883071 8vtw:1q (2.35) BS01 rna N/A N/A P0DOY7 39039256
    883072 8vtw:1r (2.35) BS01 rna N/A N/A Q5SLQ0 39039256
    883073 8vtw:1s (2.35) BS01 rna N/A N/A Q5SHP2 39039256
    883074 8vtw:1t (2.35) BS01 rna N/A N/A P80380 39039256
    883075 8vtw:1t (2.35) BS02 MG N/A N/A P80380 39039256
    883076 8vtw:1y (2.35) BS01 rna N/A N/A P0AD49 39039256
    883077 8vtw:1y (2.35) BS02 MG N/A N/A P0AD49 39039256
    883078 8vtw:20 (2.35) BS01 rna N/A N/A P60493 39039256
    883079 8vtw:20 (2.35) BS02 rna N/A N/A P60493 39039256
    883080 8vtw:20 (2.35) BS03 MG N/A N/A P60493 39039256
    883081 8vtw:21 (2.35) BS01 rna N/A N/A P60494 39039256
    883082 8vtw:22 (2.35) BS01 rna N/A N/A Q5SHP6 39039256
    883083 8vtw:23 (2.35) BS01 rna N/A N/A Q5SHQ6 39039256
    883084 8vtw:23 (2.35) BS02 rna N/A N/A Q5SHQ6 39039256
    883085 8vtw:23 (2.35) BS03 MG N/A N/A Q5SHQ6 39039256
    883086 8vtw:24 (2.35) BS01 rna N/A N/A Q5SJE1 39039256
    883087 8vtw:24 (2.35) BS02 ZN N/A N/A Q5SJE1 39039256
    883088 8vtw:25 (2.35) BS01 rna N/A N/A P80339 39039256
    883089 8vtw:25 (2.35) BS02 MG N/A N/A P80339 39039256
    883090 8vtw:25 (2.35) BS03 ZN N/A N/A P80339 39039256
    883091 8vtw:26 (2.35) BS01 rna N/A N/A P35871 39039256
    883092 8vtw:26 (2.35) BS02 MG N/A N/A P35871 39039256
    883093 8vtw:26 (2.35) BS03 ZN N/A N/A P35871 39039256
    883094 8vtw:27 (2.35) BS01 rna N/A N/A P80340 39039256
    883095 8vtw:27 (2.35) BS02 MG N/A N/A P80340 39039256
    883096 8vtw:27 (2.35) BS03 MG N/A N/A P80340 39039256
    883097 8vtw:27 (2.35) BS04 MG N/A N/A P80340 39039256
    883098 8vtw:28 (2.35) BS01 rna N/A N/A Q5SKU1 39039256
    883099 8vtw:29 (2.35) BS01 rna N/A N/A Q5SHR2 39039256
    883100 8vtw:29 (2.35) BS02 ZN N/A N/A Q5SHR2 39039256
    883101 8vtw:2D (2.35) BS01 rna N/A N/A P60405 39039256
    883102 8vtw:2D (2.35) BS02 MG N/A N/A P60405 39039256
    883103 8vtw:2D (2.35) BS03 MG N/A N/A P60405 39039256
    883104 8vtw:2D (2.35) BS04 MG N/A N/A P60405 39039256
    883105 8vtw:2D (2.35) BS05 MG N/A N/A P60405 39039256
    883106 8vtw:2D (2.35) BS06 MG N/A N/A P60405 39039256
    883107 8vtw:2D (2.35) BS07 MG N/A N/A P60405 39039256
    883108 8vtw:2E (2.35) BS01 rna N/A N/A Q5SHN8 39039256
    883109 8vtw:2E (2.35) BS02 MG N/A N/A Q5SHN8 39039256
    883110 8vtw:2E (2.35) BS03 MG N/A N/A Q5SHN8 39039256
    883111 8vtw:2F (2.35) BS01 rna N/A N/A Q5SHN9 39039256
    883112 8vtw:2F (2.35) BS02 MG N/A N/A Q5SHN9 39039256
    883113 8vtw:2F (2.35) BS03 MG N/A N/A Q5SHN9 39039256
    883114 8vtw:2F (2.35) BS04 MG N/A N/A Q5SHN9 39039256
    883115 8vtw:2F (2.35) BS05 MG N/A N/A Q5SHN9 39039256
    883116 8vtw:2G (2.35) BS01 rna N/A N/A Q5SHQ0 39039256
    883117 8vtw:2G (2.35) BS02 rna N/A N/A Q5SHQ0 39039256
    883118 8vtw:2G (2.35) BS03 MG N/A N/A Q5SHQ0 39039256
    883119 8vtw:2H (2.35) BS01 rna N/A N/A P0DOY8 39039256
    883120 8vtw:2I (2.35) BS01 rna N/A N/A Q5SLQ1 39039256
    883121 8vtw:2N (2.35) BS01 rna N/A N/A P60488 39039256
    883122 8vtw:2O (2.35) BS01 rna N/A N/A Q5SHP8 39039256
    883123 8vtw:2O (2.35) BS02 rna N/A N/A Q5SHP8 39039256
    883124 8vtw:2P (2.35) BS01 rna N/A N/A Q5SHQ7 39039256
    883125 8vtw:2Q (2.35) BS01 rna N/A N/A P60489 39039256
    883126 8vtw:2Q (2.35) BS02 rna N/A N/A P60489 39039256
    883127 8vtw:2Q (2.35) BS03 MG N/A N/A P60489 39039256
    883128 8vtw:2Q (2.35) BS04 MG N/A N/A P60489 39039256
    883129 8vtw:2R (2.35) BS01 rna N/A N/A Q9Z9H5 39039256
    883130 8vtw:2R (2.35) BS02 MG N/A N/A Q9Z9H5 39039256
    883131 8vtw:2S (2.35) BS01 rna N/A N/A Q5SHQ4 39039256
    883132 8vtw:2S (2.35) BS02 rna N/A N/A Q5SHQ4 39039256
    883133 8vtw:2T (2.35) BS01 rna N/A N/A P60490 39039256
    883134 8vtw:2T (2.35) BS02 rna N/A N/A P60490 39039256
    883135 8vtw:2U (2.35) BS01 rna N/A N/A P60491 39039256
    883136 8vtw:2V (2.35) BS01 rna N/A N/A P60492 39039256
    883137 8vtw:2V (2.35) BS02 MG N/A N/A P60492 39039256
    883138 8vtw:2V (2.35) BS03 MG N/A N/A P60492 39039256
    883139 8vtw:2W (2.35) BS01 rna N/A N/A Q5SHP3 39039256
    883140 8vtw:2W (2.35) BS02 MG N/A N/A Q5SHP3 39039256
    883141 8vtw:2W (2.35) BS03 MG N/A N/A Q5SHP3 39039256
    883142 8vtw:2X (2.35) BS01 rna N/A N/A Q5SHP0 39039256
    883143 8vtw:2Y (2.35) BS01 rna N/A N/A Q5SHP9 39039256
    883144 8vtw:2Y (2.35) BS02 ZN N/A N/A Q5SHP9 39039256
    883145 8vtw:2Z (2.35) BS01 rna N/A N/A Q5SHZ1 39039256
    883146 8vtw:2Z (2.35) BS02 rna N/A N/A Q5SHZ1 39039256
    883147 8vtw:2b (2.35) BS01 rna N/A N/A P80371 39039256
    883148 8vtw:2c (2.35) BS01 rna N/A N/A P80372 39039256
    883149 8vtw:2d (2.35) BS01 rna N/A N/A P80373 39039256
    883150 8vtw:2d (2.35) BS02 SF4 N/A N/A P80373 39039256
    883151 8vtw:2e (2.35) BS01 rna N/A N/A Q5SHQ5 39039256
    883152 8vtw:2f (2.35) BS01 rna N/A N/A Q5SLP8 39039256
    883153 8vtw:2f (2.35) BS02 MG N/A N/A Q5SLP8 39039256
    883154 8vtw:2g (2.35) BS01 rna N/A N/A P17291 39039256
    883155 8vtw:2h (2.35) BS01 rna N/A N/A P0DOY9 39039256
    883156 8vtw:2i (2.35) BS01 rna N/A N/A P80374 39039256
    883157 8vtw:2j (2.35) BS01 rna N/A N/A Q5SHN7 39039256
    883158 8vtw:2j (2.35) BS02 MG N/A N/A Q5SHN7 39039256
    883159 8vtw:2k (2.35) BS01 rna N/A N/A P80376 39039256
    883160 8vtw:2k (2.35) BS02 MG N/A N/A P80376 39039256
    883161 8vtw:2l (2.35) BS01 rna N/A N/A Q5SHN3 39039256
    883162 8vtw:2l (2.35) BS02 MG N/A N/A Q5SHN3 39039256
    883163 8vtw:2m (2.35) BS01 rna N/A N/A P80377 39039256
    883164 8vtw:2n (2.35) BS01 rna N/A N/A P0DOY6 39039256
    883165 8vtw:2n (2.35) BS02 ZN N/A N/A P0DOY6 39039256
    883166 8vtw:2o (2.35) BS01 rna N/A N/A Q5SJ76 39039256
    883167 8vtw:2o (2.35) BS02 rna N/A N/A Q5SJ76 39039256
    883168 8vtw:2p (2.35) BS01 rna N/A N/A Q5SJH3 39039256
    883169 8vtw:2q (2.35) BS01 rna N/A N/A P0DOY7 39039256
    883170 8vtw:2r (2.35) BS01 rna N/A N/A Q5SLQ0 39039256
    883171 8vtw:2s (2.35) BS01 rna N/A N/A Q5SHP2 39039256
    883172 8vtw:2t (2.35) BS01 rna N/A N/A P80380 39039256
    883173 8vtw:2t (2.35) BS02 MG N/A N/A P80380 39039256
    883174 8vtw:2y (2.35) BS01 rna N/A N/A P0AD49 39039256
    883175 8vtx:10 (2.4) BS01 rna N/A N/A P60493 39039256
    883176 8vtx:10 (2.4) BS02 rna N/A N/A P60493 39039256
    883177 8vtx:10 (2.4) BS03 rna N/A N/A P60493 39039256
    883178 8vtx:10 (2.4) BS04 MG N/A N/A P60493 39039256
    883179 8vtx:10 (2.4) BS05 MG N/A N/A P60493 39039256
    883180 8vtx:10 (2.4) BS06 MG N/A N/A P60493 39039256
    883181 8vtx:11 (2.4) BS01 rna N/A N/A P60494 39039256
    883182 8vtx:11 (2.4) BS02 rna N/A N/A P60494 39039256
    883183 8vtx:11 (2.4) BS03 MG N/A N/A P60494 39039256
    883184 8vtx:12 (2.4) BS01 rna N/A N/A Q5SHP6 39039256
    883185 8vtx:12 (2.4) BS02 MG N/A N/A Q5SHP6 39039256
    883186 8vtx:13 (2.4) BS01 rna N/A N/A Q5SHQ6 39039256
    883187 8vtx:13 (2.4) BS02 rna N/A N/A Q5SHQ6 39039256
    883188 8vtx:13 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    883189 8vtx:13 (2.4) BS04 MG N/A N/A Q5SHQ6 39039256
    883190 8vtx:14 (2.4) BS01 rna N/A N/A Q5SJE1 39039256
    883191 8vtx:14 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    883192 8vtx:15 (2.4) BS01 rna N/A N/A P80339 39039256
    883193 8vtx:15 (2.4) BS02 MG N/A N/A P80339 39039256
    883194 8vtx:15 (2.4) BS03 ZN N/A N/A P80339 39039256
    883195 8vtx:16 (2.4) BS01 rna N/A N/A P35871 39039256
    883196 8vtx:16 (2.4) BS02 MG N/A N/A P35871 39039256
    883197 8vtx:16 (2.4) BS03 MG N/A N/A P35871 39039256
    883198 8vtx:16 (2.4) BS04 ZN N/A N/A P35871 39039256
    883199 8vtx:17 (2.4) BS01 rna N/A N/A P80340 39039256
    883200 8vtx:17 (2.4) BS02 MG N/A N/A P80340 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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