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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    882801 8vtv:1Y (2.55) BS03 ZN N/A N/A Q5SHP9 39039256
    882802 8vtv:1Z (2.55) BS01 rna N/A N/A Q5SHZ1 39039256
    882803 8vtv:1Z (2.55) BS02 rna N/A N/A Q5SHZ1 39039256
    882804 8vtv:1b (2.55) BS01 rna N/A N/A P80371 39039256
    882805 8vtv:1c (2.55) BS01 rna N/A N/A P80372 39039256
    882806 8vtv:1d (2.55) BS01 rna N/A N/A P80373 39039256
    882807 8vtv:1d (2.55) BS02 SF4 N/A N/A P80373 39039256
    882808 8vtv:1e (2.55) BS01 rna N/A N/A Q5SHQ5 39039256
    882809 8vtv:1e (2.55) BS02 MG N/A N/A Q5SHQ5 39039256
    882810 8vtv:1e (2.55) BS03 MG N/A N/A Q5SHQ5 39039256
    882811 8vtv:1f (2.55) BS01 rna N/A N/A Q5SLP8 39039256
    882812 8vtv:1g (2.55) BS01 rna N/A N/A P17291 39039256
    882813 8vtv:1g (2.55) BS02 rna N/A N/A P17291 39039256
    882814 8vtv:1h (2.55) BS01 rna N/A N/A P0DOY9 39039256
    882815 8vtv:1i (2.55) BS01 rna N/A N/A P80374 39039256
    882816 8vtv:1i (2.55) BS02 rna N/A N/A P80374 39039256
    882817 8vtv:1j (2.55) BS01 rna N/A N/A Q5SHN7 39039256
    882818 8vtv:1k (2.55) BS01 rna N/A N/A P80376 39039256
    882819 8vtv:1k (2.55) BS02 MG N/A N/A P80376 39039256
    882820 8vtv:1l (2.55) BS01 rna N/A N/A Q5SHN3 39039256
    882821 8vtv:1l (2.55) BS02 rna N/A N/A Q5SHN3 39039256
    882822 8vtv:1l (2.55) BS03 MG N/A N/A Q5SHN3 39039256
    882823 8vtv:1m (2.55) BS01 rna N/A N/A P80377 39039256
    882824 8vtv:1m (2.55) BS02 rna N/A N/A P80377 39039256
    882825 8vtv:1m (2.55) BS03 MG N/A N/A P80377 39039256
    882826 8vtv:1n (2.55) BS01 rna N/A N/A P0DOY6 39039256
    882827 8vtv:1n (2.55) BS02 ZN N/A N/A P0DOY6 39039256
    882828 8vtv:1o (2.55) BS01 rna N/A N/A Q5SJ76 39039256
    882829 8vtv:1o (2.55) BS02 rna N/A N/A Q5SJ76 39039256
    882830 8vtv:1p (2.55) BS01 rna N/A N/A Q5SJH3 39039256
    882831 8vtv:1q (2.55) BS01 rna N/A N/A P0DOY7 39039256
    882832 8vtv:1r (2.55) BS01 rna N/A N/A Q5SLQ0 39039256
    882833 8vtv:1s (2.55) BS01 rna N/A N/A Q5SHP2 39039256
    882834 8vtv:1t (2.55) BS01 rna N/A N/A P80380 39039256
    882835 8vtv:1t (2.55) BS02 MG N/A N/A P80380 39039256
    882836 8vtv:20 (2.55) BS01 rna N/A N/A P60493 39039256
    882837 8vtv:20 (2.55) BS02 rna N/A N/A P60493 39039256
    882838 8vtv:21 (2.55) BS01 rna N/A N/A P60494 39039256
    882839 8vtv:21 (2.55) BS02 rna N/A N/A P60494 39039256
    882840 8vtv:21 (2.55) BS03 MG N/A N/A P60494 39039256
    882841 8vtv:22 (2.55) BS01 rna N/A N/A Q5SHP6 39039256
    882842 8vtv:23 (2.55) BS01 rna N/A N/A Q5SHQ6 39039256
    882843 8vtv:23 (2.55) BS02 MG N/A N/A Q5SHQ6 39039256
    882844 8vtv:24 (2.55) BS01 rna N/A N/A Q5SJE1 39039256
    882845 8vtv:24 (2.55) BS02 ZN N/A N/A Q5SJE1 39039256
    882846 8vtv:25 (2.55) BS01 rna N/A N/A P80339 39039256
    882847 8vtv:25 (2.55) BS02 MG N/A N/A P80339 39039256
    882848 8vtv:25 (2.55) BS03 ZN N/A N/A P80339 39039256
    882849 8vtv:26 (2.55) BS01 rna N/A N/A P35871 39039256
    882850 8vtv:26 (2.55) BS02 MG N/A N/A P35871 39039256
    882851 8vtv:26 (2.55) BS03 ZN N/A N/A P35871 39039256
    882852 8vtv:27 (2.55) BS01 rna N/A N/A P80340 39039256
    882853 8vtv:27 (2.55) BS02 MG N/A N/A P80340 39039256
    882854 8vtv:28 (2.55) BS01 rna N/A N/A Q5SKU1 39039256
    882855 8vtv:28 (2.55) BS02 MG N/A N/A Q5SKU1 39039256
    882856 8vtv:29 (2.55) BS01 rna N/A N/A Q5SHR2 39039256
    882857 8vtv:29 (2.55) BS02 MG N/A N/A Q5SHR2 39039256
    882858 8vtv:29 (2.55) BS03 ZN N/A N/A Q5SHR2 39039256
    882859 8vtv:2D (2.55) BS01 rna N/A N/A P60405 39039256
    882860 8vtv:2D (2.55) BS02 rna N/A N/A P60405 39039256
    882861 8vtv:2D (2.55) BS03 MG N/A N/A P60405 39039256
    882862 8vtv:2D (2.55) BS04 MG N/A N/A P60405 39039256
    882863 8vtv:2D (2.55) BS05 MG N/A N/A P60405 39039256
    882864 8vtv:2E (2.55) BS01 rna N/A N/A Q5SHN8 39039256
    882865 8vtv:2E (2.55) BS02 MG N/A N/A Q5SHN8 39039256
    882866 8vtv:2F (2.55) BS01 rna N/A N/A Q5SHN9 39039256
    882867 8vtv:2F (2.55) BS02 MG N/A N/A Q5SHN9 39039256
    882868 8vtv:2F (2.55) BS03 MG N/A N/A Q5SHN9 39039256
    882869 8vtv:2F (2.55) BS04 MG N/A N/A Q5SHN9 39039256
    882870 8vtv:2F (2.55) BS05 MG N/A N/A Q5SHN9 39039256
    882871 8vtv:2G (2.55) BS01 rna N/A N/A Q5SHQ0 39039256
    882872 8vtv:2G (2.55) BS02 rna N/A N/A Q5SHQ0 39039256
    882873 8vtv:2G (2.55) BS03 rna N/A N/A Q5SHQ0 39039256
    882874 8vtv:2G (2.55) BS04 MG N/A N/A Q5SHQ0 39039256
    882875 8vtv:2H (2.55) BS01 rna N/A N/A P0DOY8 39039256
    882876 8vtv:2I (2.55) BS01 rna N/A N/A Q5SLQ1 39039256
    882877 8vtv:2N (2.55) BS01 rna N/A N/A P60488 39039256
    882878 8vtv:2O (2.55) BS01 rna N/A N/A Q5SHP8 39039256
    882879 8vtv:2O (2.55) BS02 rna N/A N/A Q5SHP8 39039256
    882880 8vtv:2P (2.55) BS01 rna N/A N/A Q5SHQ7 39039256
    882881 8vtv:2Q (2.55) BS01 rna N/A N/A P60489 39039256
    882882 8vtv:2Q (2.55) BS02 rna N/A N/A P60489 39039256
    882883 8vtv:2Q (2.55) BS03 rna N/A N/A P60489 39039256
    882884 8vtv:2Q (2.55) BS04 rna N/A N/A P60489 39039256
    882885 8vtv:2Q (2.55) BS05 MG N/A N/A P60489 39039256
    882886 8vtv:2R (2.55) BS01 rna N/A N/A Q9Z9H5 39039256
    882887 8vtv:2S (2.55) BS01 rna N/A N/A Q5SHQ4 39039256
    882888 8vtv:2S (2.55) BS02 rna N/A N/A Q5SHQ4 39039256
    882889 8vtv:2T (2.55) BS01 rna N/A N/A P60490 39039256
    882890 8vtv:2T (2.55) BS02 rna N/A N/A P60490 39039256
    882891 8vtv:2T (2.55) BS03 MG N/A N/A P60490 39039256
    882892 8vtv:2U (2.55) BS01 rna N/A N/A P60491 39039256
    882893 8vtv:2U (2.55) BS02 MG N/A N/A P60491 39039256
    882894 8vtv:2V (2.55) BS01 rna N/A N/A P60492 39039256
    882895 8vtv:2V (2.55) BS02 MG N/A N/A P60492 39039256
    882896 8vtv:2W (2.55) BS01 rna N/A N/A Q5SHP3 39039256
    882897 8vtv:2W (2.55) BS02 MG N/A N/A Q5SHP3 39039256
    882898 8vtv:2W (2.55) BS03 MG N/A N/A Q5SHP3 39039256
    882899 8vtv:2X (2.55) BS01 rna N/A N/A Q5SHP0 39039256
    882900 8vtv:2X (2.55) BS02 MG N/A N/A Q5SHP0 39039256
    882901 8vtv:2Y (2.55) BS01 rna N/A N/A Q5SHP9 39039256
    882902 8vtv:2Y (2.55) BS02 ZN N/A N/A Q5SHP9 39039256
    882903 8vtv:2Z (2.55) BS01 rna N/A N/A Q5SHZ1 39039256
    882904 8vtv:2Z (2.55) BS02 rna N/A N/A Q5SHZ1 39039256
    882905 8vtv:2Z (2.55) BS03 MG N/A N/A Q5SHZ1 39039256
    882906 8vtv:2b (2.55) BS01 rna N/A N/A P80371 39039256
    882907 8vtv:2c (2.55) BS01 rna N/A N/A P80372 39039256
    882908 8vtv:2d (2.55) BS01 rna N/A N/A P80373 39039256
    882909 8vtv:2d (2.55) BS02 MG N/A N/A P80373 39039256
    882910 8vtv:2d (2.55) BS03 SF4 N/A N/A P80373 39039256
    882911 8vtv:2e (2.55) BS01 rna N/A N/A Q5SHQ5 39039256
    882912 8vtv:2e (2.55) BS02 MG N/A N/A Q5SHQ5 39039256
    882913 8vtv:2f (2.55) BS01 rna N/A N/A Q5SLP8 39039256
    882914 8vtv:2f (2.55) BS02 MG N/A N/A Q5SLP8 39039256
    882915 8vtv:2g (2.55) BS01 rna N/A N/A P17291 39039256
    882916 8vtv:2g (2.55) BS02 rna N/A N/A P17291 39039256
    882917 8vtv:2h (2.55) BS01 rna N/A N/A P0DOY9 39039256
    882918 8vtv:2i (2.55) BS01 rna N/A N/A P80374 39039256
    882919 8vtv:2i (2.55) BS02 rna N/A N/A P80374 39039256
    882920 8vtv:2j (2.55) BS01 rna N/A N/A Q5SHN7 39039256
    882921 8vtv:2k (2.55) BS01 rna N/A N/A P80376 39039256
    882922 8vtv:2k (2.55) BS02 MG N/A N/A P80376 39039256
    882923 8vtv:2l (2.55) BS01 rna N/A N/A Q5SHN3 39039256
    882924 8vtv:2l (2.55) BS02 MG N/A N/A Q5SHN3 39039256
    882925 8vtv:2l (2.55) BS03 MG N/A N/A Q5SHN3 39039256
    882926 8vtv:2m (2.55) BS01 rna N/A N/A P80377 39039256
    882927 8vtv:2m (2.55) BS02 rna N/A N/A P80377 39039256
    882928 8vtv:2n (2.55) BS01 rna N/A N/A P0DOY6 39039256
    882929 8vtv:2n (2.55) BS02 ZN N/A N/A P0DOY6 39039256
    882930 8vtv:2o (2.55) BS01 rna N/A N/A Q5SJ76 39039256
    882931 8vtv:2o (2.55) BS02 rna N/A N/A Q5SJ76 39039256
    882932 8vtv:2p (2.55) BS01 rna N/A N/A Q5SJH3 39039256
    882933 8vtv:2q (2.55) BS01 rna N/A N/A P0DOY7 39039256
    882934 8vtv:2q (2.55) BS02 MG N/A N/A P0DOY7 39039256
    882935 8vtv:2q (2.55) BS03 MG N/A N/A P0DOY7 39039256
    882936 8vtv:2r (2.55) BS01 rna N/A N/A Q5SLQ0 39039256
    882937 8vtv:2s (2.55) BS01 rna N/A N/A Q5SHP2 39039256
    882938 8vtv:2t (2.55) BS01 rna N/A N/A P80380 39039256
    882939 8vtw:10 (2.35) BS01 rna N/A N/A P60493 39039256
    882940 8vtw:10 (2.35) BS02 rna N/A N/A P60493 39039256
    882941 8vtw:10 (2.35) BS03 MG N/A N/A P60493 39039256
    882942 8vtw:10 (2.35) BS04 MG N/A N/A P60493 39039256
    882943 8vtw:10 (2.35) BS05 MG N/A N/A P60493 39039256
    882944 8vtw:11 (2.35) BS01 rna N/A N/A P60494 39039256
    882945 8vtw:11 (2.35) BS02 MG N/A N/A P60494 39039256
    882946 8vtw:12 (2.35) BS01 rna N/A N/A Q5SHP6 39039256
    882947 8vtw:13 (2.35) BS01 rna N/A N/A Q5SHQ6 39039256
    882948 8vtw:13 (2.35) BS02 rna N/A N/A Q5SHQ6 39039256
    882949 8vtw:13 (2.35) BS03 MG N/A N/A Q5SHQ6 39039256
    882950 8vtw:13 (2.35) BS04 MG N/A N/A Q5SHQ6 39039256
    882951 8vtw:14 (2.35) BS01 rna N/A N/A Q5SJE1 39039256
    882952 8vtw:14 (2.35) BS02 ZN N/A N/A Q5SJE1 39039256
    882953 8vtw:15 (2.35) BS01 rna N/A N/A P80339 39039256
    882954 8vtw:15 (2.35) BS02 MG N/A N/A P80339 39039256
    882955 8vtw:15 (2.35) BS03 MG N/A N/A P80339 39039256
    882956 8vtw:15 (2.35) BS04 ZN N/A N/A P80339 39039256
    882957 8vtw:16 (2.35) BS01 rna N/A N/A P35871 39039256
    882958 8vtw:16 (2.35) BS02 ZN N/A N/A P35871 39039256
    882959 8vtw:17 (2.35) BS01 rna N/A N/A P80340 39039256
    882960 8vtw:17 (2.35) BS02 MG N/A N/A P80340 39039256
    882961 8vtw:17 (2.35) BS03 MG N/A N/A P80340 39039256
    882962 8vtw:18 (2.35) BS01 rna N/A N/A Q5SKU1 39039256
    882963 8vtw:18 (2.35) BS02 MG N/A N/A Q5SKU1 39039256
    882964 8vtw:18 (2.35) BS03 MG N/A N/A Q5SKU1 39039256
    882965 8vtw:19 (2.35) BS01 rna N/A N/A Q5SHR2 39039256
    882966 8vtw:19 (2.35) BS02 ZN N/A N/A Q5SHR2 39039256
    882967 8vtw:1D (2.35) BS01 rna N/A N/A P60405 39039256
    882968 8vtw:1D (2.35) BS02 rna N/A N/A P60405 39039256
    882969 8vtw:1D (2.35) BS03 MG N/A N/A P60405 39039256
    882970 8vtw:1D (2.35) BS04 MG N/A N/A P60405 39039256
    882971 8vtw:1D (2.35) BS05 MG N/A N/A P60405 39039256
    882972 8vtw:1D (2.35) BS06 MG N/A N/A P60405 39039256
    882973 8vtw:1D (2.35) BS07 MG N/A N/A P60405 39039256
    882974 8vtw:1D (2.35) BS08 MG N/A N/A P60405 39039256
    882975 8vtw:1D (2.35) BS09 MG N/A N/A P60405 39039256
    882976 8vtw:1D (2.35) BS10 MG N/A N/A P60405 39039256
    882977 8vtw:1D (2.35) BS11 MG N/A N/A P60405 39039256
    882978 8vtw:1D (2.35) BS12 MG N/A N/A P60405 39039256
    882979 8vtw:1E (2.35) BS01 rna N/A N/A Q5SHN8 39039256
    882980 8vtw:1E (2.35) BS02 MG N/A N/A Q5SHN8 39039256
    882981 8vtw:1E (2.35) BS03 MG N/A N/A Q5SHN8 39039256
    882982 8vtw:1E (2.35) BS04 MG N/A N/A Q5SHN8 39039256
    882983 8vtw:1E (2.35) BS05 MG N/A N/A Q5SHN8 39039256
    882984 8vtw:1F (2.35) BS01 rna N/A N/A Q5SHN9 39039256
    882985 8vtw:1F (2.35) BS02 MG N/A N/A Q5SHN9 39039256
    882986 8vtw:1F (2.35) BS03 MG N/A N/A Q5SHN9 39039256
    882987 8vtw:1F (2.35) BS04 MG N/A N/A Q5SHN9 39039256
    882988 8vtw:1F (2.35) BS05 MG N/A N/A Q5SHN9 39039256
    882989 8vtw:1F (2.35) BS06 ARG N/A N/A Q5SHN9 39039256
    882990 8vtw:1F (2.35) BS07 MG N/A N/A Q5SHN9 39039256
    882991 8vtw:1F (2.35) BS08 MG N/A N/A Q5SHN9 39039256
    882992 8vtw:1F (2.35) BS09 MG N/A N/A Q5SHN9 39039256
    882993 8vtw:1F (2.35) BS10 MG N/A N/A Q5SHN9 39039256
    882994 8vtw:1F (2.35) BS11 MG N/A N/A Q5SHN9 39039256
    882995 8vtw:1F (2.35) BS12 MG N/A N/A Q5SHN9 39039256
    882996 8vtw:1F (2.35) BS13 MG N/A N/A Q5SHN9 39039256
    882997 8vtw:1F (2.35) BS14 MG N/A N/A Q5SHN9 39039256
    882998 8vtw:1F (2.35) BS15 MG N/A N/A Q5SHN9 39039256
    882999 8vtw:1G (2.35) BS01 rna N/A N/A Q5SHQ0 39039256
    883000 8vtw:1G (2.35) BS02 rna N/A N/A Q5SHQ0 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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