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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    882601 8vtu:2F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    882602 8vtu:2F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    882603 8vtu:2F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    882604 8vtu:2G (2.4) BS01 rna N/A N/A Q5SHQ0 39039256
    882605 8vtu:2G (2.4) BS02 rna N/A N/A Q5SHQ0 39039256
    882606 8vtu:2G (2.4) BS03 rna N/A N/A Q5SHQ0 39039256
    882607 8vtu:2G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    882608 8vtu:2H (2.4) BS01 rna N/A N/A P0DOY8 39039256
    882609 8vtu:2I (2.4) BS01 rna N/A N/A Q5SLQ1 39039256
    882610 8vtu:2N (2.4) BS01 rna N/A N/A P60488 39039256
    882611 8vtu:2O (2.4) BS01 rna N/A N/A Q5SHP8 39039256
    882612 8vtu:2O (2.4) BS02 rna N/A N/A Q5SHP8 39039256
    882613 8vtu:2P (2.4) BS01 rna N/A N/A Q5SHQ7 39039256
    882614 8vtu:2Q (2.4) BS01 rna N/A N/A P60489 39039256
    882615 8vtu:2Q (2.4) BS02 rna N/A N/A P60489 39039256
    882616 8vtu:2Q (2.4) BS03 rna N/A N/A P60489 39039256
    882617 8vtu:2Q (2.4) BS04 rna N/A N/A P60489 39039256
    882618 8vtu:2Q (2.4) BS05 MG N/A N/A P60489 39039256
    882619 8vtu:2Q (2.4) BS06 MG N/A N/A P60489 39039256
    882620 8vtu:2R (2.4) BS01 rna N/A N/A Q9Z9H5 39039256
    882621 8vtu:2S (2.4) BS01 rna N/A N/A Q5SHQ4 39039256
    882622 8vtu:2S (2.4) BS02 rna N/A N/A Q5SHQ4 39039256
    882623 8vtu:2T (2.4) BS01 rna N/A N/A P60490 39039256
    882624 8vtu:2T (2.4) BS02 rna N/A N/A P60490 39039256
    882625 8vtu:2T (2.4) BS03 MG N/A N/A P60490 39039256
    882626 8vtu:2U (2.4) BS01 rna N/A N/A P60491 39039256
    882627 8vtu:2U (2.4) BS02 MG N/A N/A P60491 39039256
    882628 8vtu:2V (2.4) BS01 rna N/A N/A P60492 39039256
    882629 8vtu:2V (2.4) BS02 MG N/A N/A P60492 39039256
    882630 8vtu:2W (2.4) BS01 rna N/A N/A Q5SHP3 39039256
    882631 8vtu:2W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    882632 8vtu:2X (2.4) BS01 rna N/A N/A Q5SHP0 39039256
    882633 8vtu:2X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    882634 8vtu:2Y (2.4) BS01 rna N/A N/A Q5SHP9 39039256
    882635 8vtu:2Y (2.4) BS02 ZN N/A N/A Q5SHP9 39039256
    882636 8vtu:2Z (2.4) BS01 rna N/A N/A Q5SHZ1 39039256
    882637 8vtu:2Z (2.4) BS02 rna N/A N/A Q5SHZ1 39039256
    882638 8vtu:2b (2.4) BS01 rna N/A N/A P80371 39039256
    882639 8vtu:2c (2.4) BS01 rna N/A N/A P80372 39039256
    882640 8vtu:2d (2.4) BS01 rna N/A N/A P80373 39039256
    882641 8vtu:2d (2.4) BS02 SF4 N/A N/A P80373 39039256
    882642 8vtu:2e (2.4) BS01 rna N/A N/A Q5SHQ5 39039256
    882643 8vtu:2e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    882644 8vtu:2f (2.4) BS01 rna N/A N/A Q5SLP8 39039256
    882645 8vtu:2f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    882646 8vtu:2g (2.4) BS01 rna N/A N/A P17291 39039256
    882647 8vtu:2g (2.4) BS02 rna N/A N/A P17291 39039256
    882648 8vtu:2h (2.4) BS01 rna N/A N/A P0DOY9 39039256
    882649 8vtu:2i (2.4) BS01 rna N/A N/A P80374 39039256
    882650 8vtu:2i (2.4) BS02 rna N/A N/A P80374 39039256
    882651 8vtu:2j (2.4) BS01 rna N/A N/A Q5SHN7 39039256
    882652 8vtu:2k (2.4) BS01 rna N/A N/A P80376 39039256
    882653 8vtu:2k (2.4) BS02 MG N/A N/A P80376 39039256
    882654 8vtu:2l (2.4) BS01 rna N/A N/A Q5SHN3 39039256
    882655 8vtu:2l (2.4) BS02 MG N/A N/A Q5SHN3 39039256
    882656 8vtu:2l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    882657 8vtu:2l (2.4) BS04 MG N/A N/A Q5SHN3 39039256
    882658 8vtu:2m (2.4) BS01 rna N/A N/A P80377 39039256
    882659 8vtu:2m (2.4) BS02 rna N/A N/A P80377 39039256
    882660 8vtu:2n (2.4) BS01 rna N/A N/A P0DOY6 39039256
    882661 8vtu:2n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    882662 8vtu:2o (2.4) BS01 rna N/A N/A Q5SJ76 39039256
    882663 8vtu:2o (2.4) BS02 rna N/A N/A Q5SJ76 39039256
    882664 8vtu:2p (2.4) BS01 rna N/A N/A Q5SJH3 39039256
    882665 8vtu:2q (2.4) BS01 rna N/A N/A P0DOY7 39039256
    882666 8vtu:2q (2.4) BS02 MG N/A N/A P0DOY7 39039256
    882667 8vtu:2q (2.4) BS03 MG N/A N/A P0DOY7 39039256
    882668 8vtu:2r (2.4) BS01 rna N/A N/A Q5SLQ0 39039256
    882669 8vtu:2s (2.4) BS01 rna N/A N/A Q5SHP2 39039256
    882670 8vtu:2t (2.4) BS01 rna N/A N/A P80380 39039256
    882671 8vtv:10 (2.55) BS01 rna N/A N/A P60493 39039256
    882672 8vtv:10 (2.55) BS02 rna N/A N/A P60493 39039256
    882673 8vtv:10 (2.55) BS03 rna N/A N/A P60493 39039256
    882674 8vtv:10 (2.55) BS04 MG N/A N/A P60493 39039256
    882675 8vtv:10 (2.55) BS05 MG N/A N/A P60493 39039256
    882676 8vtv:11 (2.55) BS01 rna N/A N/A P60494 39039256
    882677 8vtv:11 (2.55) BS02 rna N/A N/A P60494 39039256
    882678 8vtv:11 (2.55) BS03 MG N/A N/A P60494 39039256
    882679 8vtv:12 (2.55) BS01 rna N/A N/A Q5SHP6 39039256
    882680 8vtv:12 (2.55) BS02 MG N/A N/A Q5SHP6 39039256
    882681 8vtv:13 (2.55) BS01 rna N/A N/A Q5SHQ6 39039256
    882682 8vtv:13 (2.55) BS02 rna N/A N/A Q5SHQ6 39039256
    882683 8vtv:13 (2.55) BS03 MG N/A N/A Q5SHQ6 39039256
    882684 8vtv:13 (2.55) BS04 MG N/A N/A Q5SHQ6 39039256
    882685 8vtv:13 (2.55) BS05 MG N/A N/A Q5SHQ6 39039256
    882686 8vtv:13 (2.55) BS06 MG N/A N/A Q5SHQ6 39039256
    882687 8vtv:14 (2.55) BS01 rna N/A N/A Q5SJE1 39039256
    882688 8vtv:14 (2.55) BS02 ZN N/A N/A Q5SJE1 39039256
    882689 8vtv:15 (2.55) BS01 rna N/A N/A P80339 39039256
    882690 8vtv:15 (2.55) BS02 MG N/A N/A P80339 39039256
    882691 8vtv:15 (2.55) BS03 MG N/A N/A P80339 39039256
    882692 8vtv:15 (2.55) BS04 MG N/A N/A P80339 39039256
    882693 8vtv:15 (2.55) BS05 ZN N/A N/A P80339 39039256
    882694 8vtv:16 (2.55) BS01 rna N/A N/A P35871 39039256
    882695 8vtv:16 (2.55) BS02 MG N/A N/A P35871 39039256
    882696 8vtv:16 (2.55) BS03 MG N/A N/A P35871 39039256
    882697 8vtv:16 (2.55) BS04 ZN N/A N/A P35871 39039256
    882698 8vtv:17 (2.55) BS01 rna N/A N/A P80340 39039256
    882699 8vtv:17 (2.55) BS02 MG N/A N/A P80340 39039256
    882700 8vtv:17 (2.55) BS03 MG N/A N/A P80340 39039256
    882701 8vtv:18 (2.55) BS01 rna N/A N/A Q5SKU1 39039256
    882702 8vtv:18 (2.55) BS02 MG N/A N/A Q5SKU1 39039256
    882703 8vtv:18 (2.55) BS03 MG N/A N/A Q5SKU1 39039256
    882704 8vtv:19 (2.55) BS01 rna N/A N/A Q5SHR2 39039256
    882705 8vtv:19 (2.55) BS02 ZN N/A N/A Q5SHR2 39039256
    882706 8vtv:1D (2.55) BS01 rna N/A N/A P60405 39039256
    882707 8vtv:1D (2.55) BS02 rna N/A N/A P60405 39039256
    882708 8vtv:1D (2.55) BS03 MG N/A N/A P60405 39039256
    882709 8vtv:1D (2.55) BS04 MG N/A N/A P60405 39039256
    882710 8vtv:1D (2.55) BS05 MG N/A N/A P60405 39039256
    882711 8vtv:1D (2.55) BS06 MG N/A N/A P60405 39039256
    882712 8vtv:1D (2.55) BS07 MG N/A N/A P60405 39039256
    882713 8vtv:1D (2.55) BS08 MG N/A N/A P60405 39039256
    882714 8vtv:1D (2.55) BS09 MG N/A N/A P60405 39039256
    882715 8vtv:1D (2.55) BS10 MG N/A N/A P60405 39039256
    882716 8vtv:1D (2.55) BS11 MG N/A N/A P60405 39039256
    882717 8vtv:1D (2.55) BS12 MG N/A N/A P60405 39039256
    882718 8vtv:1D (2.55) BS13 MG N/A N/A P60405 39039256
    882719 8vtv:1E (2.55) BS01 rna N/A N/A Q5SHN8 39039256
    882720 8vtv:1E (2.55) BS02 MG N/A N/A Q5SHN8 39039256
    882721 8vtv:1E (2.55) BS03 MG N/A N/A Q5SHN8 39039256
    882722 8vtv:1E (2.55) BS04 MG N/A N/A Q5SHN8 39039256
    882723 8vtv:1E (2.55) BS05 MG N/A N/A Q5SHN8 39039256
    882724 8vtv:1F (2.55) BS01 rna N/A N/A Q5SHN9 39039256
    882725 8vtv:1F (2.55) BS02 MG N/A N/A Q5SHN9 39039256
    882726 8vtv:1F (2.55) BS03 MG N/A N/A Q5SHN9 39039256
    882727 8vtv:1F (2.55) BS04 MG N/A N/A Q5SHN9 39039256
    882728 8vtv:1F (2.55) BS05 MG N/A N/A Q5SHN9 39039256
    882729 8vtv:1F (2.55) BS06 MG N/A N/A Q5SHN9 39039256
    882730 8vtv:1F (2.55) BS07 MG N/A N/A Q5SHN9 39039256
    882731 8vtv:1F (2.55) BS08 MG N/A N/A Q5SHN9 39039256
    882732 8vtv:1F (2.55) BS09 MG N/A N/A Q5SHN9 39039256
    882733 8vtv:1F (2.55) BS10 MG N/A N/A Q5SHN9 39039256
    882734 8vtv:1G (2.55) BS01 rna N/A N/A Q5SHQ0 39039256
    882735 8vtv:1G (2.55) BS02 rna N/A N/A Q5SHQ0 39039256
    882736 8vtv:1G (2.55) BS03 rna N/A N/A Q5SHQ0 39039256
    882737 8vtv:1G (2.55) BS04 MG N/A N/A Q5SHQ0 39039256
    882738 8vtv:1G (2.55) BS05 MG N/A N/A Q5SHQ0 39039256
    882739 8vtv:1H (2.55) BS01 rna N/A N/A P0DOY8 39039256
    882740 8vtv:1I (2.55) BS01 rna N/A N/A Q5SLQ1 39039256
    882741 8vtv:1I (2.55) BS02 MG N/A N/A Q5SLQ1 39039256
    882742 8vtv:1N (2.55) BS01 rna N/A N/A P60488 39039256
    882743 8vtv:1N (2.55) BS02 MG N/A N/A P60488 39039256
    882744 8vtv:1N (2.55) BS03 MG N/A N/A P60488 39039256
    882745 8vtv:1N (2.55) BS04 MG N/A N/A P60488 39039256
    882746 8vtv:1N (2.55) BS05 MG N/A N/A P60488 39039256
    882747 8vtv:1N (2.55) BS06 MG N/A N/A P60488 39039256
    882748 8vtv:1O (2.55) BS01 rna N/A N/A Q5SHP8 39039256
    882749 8vtv:1O (2.55) BS02 rna N/A N/A Q5SHP8 39039256
    882750 8vtv:1O (2.55) BS03 MG N/A N/A Q5SHP8 39039256
    882751 8vtv:1P (2.55) BS01 rna N/A N/A Q5SHQ7 39039256
    882752 8vtv:1P (2.55) BS02 MG N/A N/A Q5SHQ7 39039256
    882753 8vtv:1P (2.55) BS03 MG N/A N/A Q5SHQ7 39039256
    882754 8vtv:1P (2.55) BS04 MG N/A N/A Q5SHQ7 39039256
    882755 8vtv:1P (2.55) BS05 MG N/A N/A Q5SHQ7 39039256
    882756 8vtv:1Q (2.55) BS01 rna N/A N/A P60489 39039256
    882757 8vtv:1Q (2.55) BS02 rna N/A N/A P60489 39039256
    882758 8vtv:1Q (2.55) BS03 rna N/A N/A P60489 39039256
    882759 8vtv:1Q (2.55) BS04 rna N/A N/A P60489 39039256
    882760 8vtv:1Q (2.55) BS05 MG N/A N/A P60489 39039256
    882761 8vtv:1Q (2.55) BS06 MG N/A N/A P60489 39039256
    882762 8vtv:1Q (2.55) BS07 MG N/A N/A P60489 39039256
    882763 8vtv:1Q (2.55) BS08 MG N/A N/A P60489 39039256
    882764 8vtv:1Q (2.55) BS09 MG N/A N/A P60489 39039256
    882765 8vtv:1R (2.55) BS01 rna N/A N/A Q9Z9H5 39039256
    882766 8vtv:1R (2.55) BS02 MG N/A N/A Q9Z9H5 39039256
    882767 8vtv:1S (2.55) BS01 rna N/A N/A Q5SHQ4 39039256
    882768 8vtv:1S (2.55) BS02 rna N/A N/A Q5SHQ4 39039256
    882769 8vtv:1S (2.55) BS03 MG N/A N/A Q5SHQ4 39039256
    882770 8vtv:1S (2.55) BS04 MG N/A N/A Q5SHQ4 39039256
    882771 8vtv:1T (2.55) BS01 rna N/A N/A P60490 39039256
    882772 8vtv:1T (2.55) BS02 rna N/A N/A P60490 39039256
    882773 8vtv:1U (2.55) BS01 rna N/A N/A P60491 39039256
    882774 8vtv:1U (2.55) BS02 MG N/A N/A P60491 39039256
    882775 8vtv:1U (2.55) BS03 MG N/A N/A P60491 39039256
    882776 8vtv:1U (2.55) BS04 MG N/A N/A P60491 39039256
    882777 8vtv:1U (2.55) BS05 MG N/A N/A P60491 39039256
    882778 8vtv:1U (2.55) BS06 MG N/A N/A P60491 39039256
    882779 8vtv:1U (2.55) BS07 MG N/A N/A P60491 39039256
    882780 8vtv:1V (2.55) BS01 rna N/A N/A P60492 39039256
    882781 8vtv:1V (2.55) BS02 MG N/A N/A P60492 39039256
    882782 8vtv:1V (2.55) BS03 MG N/A N/A P60492 39039256
    882783 8vtv:1V (2.55) BS04 MG N/A N/A P60492 39039256
    882784 8vtv:1V (2.55) BS05 MG N/A N/A P60492 39039256
    882785 8vtv:1V (2.55) BS06 MG N/A N/A P60492 39039256
    882786 8vtv:1W (2.55) BS01 rna N/A N/A Q5SHP3 39039256
    882787 8vtv:1W (2.55) BS02 MG N/A N/A Q5SHP3 39039256
    882788 8vtv:1W (2.55) BS03 MG N/A N/A Q5SHP3 39039256
    882789 8vtv:1W (2.55) BS04 MG N/A N/A Q5SHP3 39039256
    882790 8vtv:1W (2.55) BS05 MG N/A N/A Q5SHP3 39039256
    882791 8vtv:1W (2.55) BS06 MG N/A N/A Q5SHP3 39039256
    882792 8vtv:1W (2.55) BS07 MG N/A N/A Q5SHP3 39039256
    882793 8vtv:1X (2.55) BS01 rna N/A N/A Q5SHP0 39039256
    882794 8vtv:1X (2.55) BS02 MG N/A N/A Q5SHP0 39039256
    882795 8vtv:1X (2.55) BS03 MG N/A N/A Q5SHP0 39039256
    882796 8vtv:1X (2.55) BS04 MG N/A N/A Q5SHP0 39039256
    882797 8vtv:1X (2.55) BS05 MG N/A N/A Q5SHP0 39039256
    882798 8vtv:1X (2.55) BS06 MG N/A N/A Q5SHP0 39039256
    882799 8vtv:1Y (2.55) BS01 rna N/A N/A Q5SHP9 39039256
    882800 8vtv:1Y (2.55) BS02 MG N/A N/A Q5SHP9 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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