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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    882401 8vtu:10 (2.4) BS02 rna N/A N/A P60493 39039256
    882402 8vtu:10 (2.4) BS03 rna N/A N/A P60493 39039256
    882403 8vtu:10 (2.4) BS04 MG N/A N/A P60493 39039256
    882404 8vtu:10 (2.4) BS05 MG N/A N/A P60493 39039256
    882405 8vtu:10 (2.4) BS06 MG N/A N/A P60493 39039256
    882406 8vtu:11 (2.4) BS01 rna N/A N/A P60494 39039256
    882407 8vtu:11 (2.4) BS02 rna N/A N/A P60494 39039256
    882408 8vtu:11 (2.4) BS03 MG N/A N/A P60494 39039256
    882409 8vtu:11 (2.4) BS04 MG N/A N/A P60494 39039256
    882410 8vtu:12 (2.4) BS01 rna N/A N/A Q5SHP6 39039256
    882411 8vtu:12 (2.4) BS02 MG N/A N/A Q5SHP6 39039256
    882412 8vtu:13 (2.4) BS01 rna N/A N/A Q5SHQ6 39039256
    882413 8vtu:13 (2.4) BS02 rna N/A N/A Q5SHQ6 39039256
    882414 8vtu:13 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    882415 8vtu:13 (2.4) BS04 MG N/A N/A Q5SHQ6 39039256
    882416 8vtu:13 (2.4) BS05 MG N/A N/A Q5SHQ6 39039256
    882417 8vtu:14 (2.4) BS01 rna N/A N/A Q5SJE1 39039256
    882418 8vtu:14 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    882419 8vtu:15 (2.4) BS01 rna N/A N/A P80339 39039256
    882420 8vtu:15 (2.4) BS02 MG N/A N/A P80339 39039256
    882421 8vtu:15 (2.4) BS03 ZN N/A N/A P80339 39039256
    882422 8vtu:16 (2.4) BS01 rna N/A N/A P35871 39039256
    882423 8vtu:16 (2.4) BS02 MG N/A N/A P35871 39039256
    882424 8vtu:16 (2.4) BS03 ZN N/A N/A P35871 39039256
    882425 8vtu:17 (2.4) BS01 rna N/A N/A P80340 39039256
    882426 8vtu:17 (2.4) BS02 MG N/A N/A P80340 39039256
    882427 8vtu:17 (2.4) BS03 MG N/A N/A P80340 39039256
    882428 8vtu:18 (2.4) BS01 rna N/A N/A Q5SKU1 39039256
    882429 8vtu:18 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    882430 8vtu:18 (2.4) BS03 MG N/A N/A Q5SKU1 39039256
    882431 8vtu:18 (2.4) BS04 MG N/A N/A Q5SKU1 39039256
    882432 8vtu:18 (2.4) BS05 MG N/A N/A Q5SKU1 39039256
    882433 8vtu:19 (2.4) BS01 rna N/A N/A Q5SHR2 39039256
    882434 8vtu:19 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    882435 8vtu:1D (2.4) BS01 rna N/A N/A P60405 39039256
    882436 8vtu:1D (2.4) BS02 rna N/A N/A P60405 39039256
    882437 8vtu:1D (2.4) BS03 MG N/A N/A P60405 39039256
    882438 8vtu:1D (2.4) BS04 MG N/A N/A P60405 39039256
    882439 8vtu:1D (2.4) BS05 MG N/A N/A P60405 39039256
    882440 8vtu:1D (2.4) BS06 MG N/A N/A P60405 39039256
    882441 8vtu:1D (2.4) BS07 MG N/A N/A P60405 39039256
    882442 8vtu:1D (2.4) BS08 MG N/A N/A P60405 39039256
    882443 8vtu:1D (2.4) BS09 MG N/A N/A P60405 39039256
    882444 8vtu:1D (2.4) BS10 MG N/A N/A P60405 39039256
    882445 8vtu:1D (2.4) BS11 MG N/A N/A P60405 39039256
    882446 8vtu:1D (2.4) BS12 MG N/A N/A P60405 39039256
    882447 8vtu:1D (2.4) BS13 MG N/A N/A P60405 39039256
    882448 8vtu:1D (2.4) BS14 MG N/A N/A P60405 39039256
    882449 8vtu:1E (2.4) BS01 rna N/A N/A Q5SHN8 39039256
    882450 8vtu:1E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    882451 8vtu:1E (2.4) BS03 MG N/A N/A Q5SHN8 39039256
    882452 8vtu:1E (2.4) BS04 MG N/A N/A Q5SHN8 39039256
    882453 8vtu:1E (2.4) BS05 MG N/A N/A Q5SHN8 39039256
    882454 8vtu:1F (2.4) BS01 rna N/A N/A Q5SHN9 39039256
    882455 8vtu:1F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    882456 8vtu:1F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    882457 8vtu:1F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    882458 8vtu:1F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    882459 8vtu:1F (2.4) BS06 MG N/A N/A Q5SHN9 39039256
    882460 8vtu:1F (2.4) BS07 MG N/A N/A Q5SHN9 39039256
    882461 8vtu:1F (2.4) BS08 MG N/A N/A Q5SHN9 39039256
    882462 8vtu:1F (2.4) BS09 MG N/A N/A Q5SHN9 39039256
    882463 8vtu:1F (2.4) BS10 MG N/A N/A Q5SHN9 39039256
    882464 8vtu:1G (2.4) BS01 rna N/A N/A Q5SHQ0 39039256
    882465 8vtu:1G (2.4) BS02 rna N/A N/A Q5SHQ0 39039256
    882466 8vtu:1G (2.4) BS03 rna N/A N/A Q5SHQ0 39039256
    882467 8vtu:1G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    882468 8vtu:1H (2.4) BS01 rna N/A N/A P0DOY8 39039256
    882469 8vtu:1I (2.4) BS01 rna N/A N/A Q5SLQ1 39039256
    882470 8vtu:1I (2.4) BS02 MG N/A N/A Q5SLQ1 39039256
    882471 8vtu:1N (2.4) BS01 rna N/A N/A P60488 39039256
    882472 8vtu:1N (2.4) BS02 MG N/A N/A P60488 39039256
    882473 8vtu:1N (2.4) BS03 MG N/A N/A P60488 39039256
    882474 8vtu:1N (2.4) BS04 MG N/A N/A P60488 39039256
    882475 8vtu:1O (2.4) BS01 rna N/A N/A Q5SHP8 39039256
    882476 8vtu:1O (2.4) BS02 rna N/A N/A Q5SHP8 39039256
    882477 8vtu:1O (2.4) BS03 MG N/A N/A Q5SHP8 39039256
    882478 8vtu:1O (2.4) BS04 MG N/A N/A Q5SHP8 39039256
    882479 8vtu:1P (2.4) BS01 rna N/A N/A Q5SHQ7 39039256
    882480 8vtu:1P (2.4) BS02 MG N/A N/A Q5SHQ7 39039256
    882481 8vtu:1P (2.4) BS03 MG N/A N/A Q5SHQ7 39039256
    882482 8vtu:1P (2.4) BS04 MG N/A N/A Q5SHQ7 39039256
    882483 8vtu:1P (2.4) BS05 MG N/A N/A Q5SHQ7 39039256
    882484 8vtu:1Q (2.4) BS01 rna N/A N/A P60489 39039256
    882485 8vtu:1Q (2.4) BS02 rna N/A N/A P60489 39039256
    882486 8vtu:1Q (2.4) BS03 rna N/A N/A P60489 39039256
    882487 8vtu:1Q (2.4) BS04 rna N/A N/A P60489 39039256
    882488 8vtu:1Q (2.4) BS05 MG N/A N/A P60489 39039256
    882489 8vtu:1Q (2.4) BS06 MG N/A N/A P60489 39039256
    882490 8vtu:1Q (2.4) BS07 MG N/A N/A P60489 39039256
    882491 8vtu:1Q (2.4) BS08 MG N/A N/A P60489 39039256
    882492 8vtu:1Q (2.4) BS09 MG N/A N/A P60489 39039256
    882493 8vtu:1R (2.4) BS01 rna N/A N/A Q9Z9H5 39039256
    882494 8vtu:1R (2.4) BS02 MG N/A N/A Q9Z9H5 39039256
    882495 8vtu:1R (2.4) BS03 MG N/A N/A Q9Z9H5 39039256
    882496 8vtu:1S (2.4) BS01 rna N/A N/A Q5SHQ4 39039256
    882497 8vtu:1S (2.4) BS02 rna N/A N/A Q5SHQ4 39039256
    882498 8vtu:1S (2.4) BS03 MG N/A N/A Q5SHQ4 39039256
    882499 8vtu:1S (2.4) BS04 MG N/A N/A Q5SHQ4 39039256
    882500 8vtu:1T (2.4) BS01 rna N/A N/A P60490 39039256
    882501 8vtu:1T (2.4) BS02 rna N/A N/A P60490 39039256
    882502 8vtu:1U (2.4) BS01 rna N/A N/A P60491 39039256
    882503 8vtu:1U (2.4) BS02 MG N/A N/A P60491 39039256
    882504 8vtu:1U (2.4) BS03 MG N/A N/A P60491 39039256
    882505 8vtu:1U (2.4) BS04 MG N/A N/A P60491 39039256
    882506 8vtu:1U (2.4) BS05 MG N/A N/A P60491 39039256
    882507 8vtu:1U (2.4) BS06 MG N/A N/A P60491 39039256
    882508 8vtu:1U (2.4) BS07 MG N/A N/A P60491 39039256
    882509 8vtu:1U (2.4) BS08 MG N/A N/A P60491 39039256
    882510 8vtu:1V (2.4) BS01 rna N/A N/A P60492 39039256
    882511 8vtu:1V (2.4) BS02 MG N/A N/A P60492 39039256
    882512 8vtu:1V (2.4) BS03 MG N/A N/A P60492 39039256
    882513 8vtu:1V (2.4) BS04 MG N/A N/A P60492 39039256
    882514 8vtu:1V (2.4) BS05 MG N/A N/A P60492 39039256
    882515 8vtu:1V (2.4) BS06 MG N/A N/A P60492 39039256
    882516 8vtu:1V (2.4) BS07 MG N/A N/A P60492 39039256
    882517 8vtu:1W (2.4) BS01 rna N/A N/A Q5SHP3 39039256
    882518 8vtu:1W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    882519 8vtu:1W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    882520 8vtu:1W (2.4) BS04 MG N/A N/A Q5SHP3 39039256
    882521 8vtu:1W (2.4) BS05 MG N/A N/A Q5SHP3 39039256
    882522 8vtu:1X (2.4) BS01 rna N/A N/A Q5SHP0 39039256
    882523 8vtu:1X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    882524 8vtu:1X (2.4) BS03 MG N/A N/A Q5SHP0 39039256
    882525 8vtu:1X (2.4) BS04 MG N/A N/A Q5SHP0 39039256
    882526 8vtu:1X (2.4) BS05 MG N/A N/A Q5SHP0 39039256
    882527 8vtu:1X (2.4) BS06 MG N/A N/A Q5SHP0 39039256
    882528 8vtu:1Y (2.4) BS01 rna N/A N/A Q5SHP9 39039256
    882529 8vtu:1Y (2.4) BS02 MG N/A N/A Q5SHP9 39039256
    882530 8vtu:1Y (2.4) BS03 MG N/A N/A Q5SHP9 39039256
    882531 8vtu:1Y (2.4) BS04 ZN N/A N/A Q5SHP9 39039256
    882532 8vtu:1Z (2.4) BS01 rna N/A N/A Q5SHZ1 39039256
    882533 8vtu:1Z (2.4) BS02 rna N/A N/A Q5SHZ1 39039256
    882534 8vtu:1b (2.4) BS01 rna N/A N/A P80371 39039256
    882535 8vtu:1c (2.4) BS01 rna N/A N/A P80372 39039256
    882536 8vtu:1d (2.4) BS01 rna N/A N/A P80373 39039256
    882537 8vtu:1d (2.4) BS02 SF4 N/A N/A P80373 39039256
    882538 8vtu:1e (2.4) BS01 rna N/A N/A Q5SHQ5 39039256
    882539 8vtu:1e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    882540 8vtu:1e (2.4) BS03 MG N/A N/A Q5SHQ5 39039256
    882541 8vtu:1f (2.4) BS01 rna N/A N/A Q5SLP8 39039256
    882542 8vtu:1f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    882543 8vtu:1g (2.4) BS01 rna N/A N/A P17291 39039256
    882544 8vtu:1g (2.4) BS02 rna N/A N/A P17291 39039256
    882545 8vtu:1h (2.4) BS01 rna N/A N/A P0DOY9 39039256
    882546 8vtu:1i (2.4) BS01 rna N/A N/A P80374 39039256
    882547 8vtu:1i (2.4) BS02 rna N/A N/A P80374 39039256
    882548 8vtu:1j (2.4) BS01 rna N/A N/A Q5SHN7 39039256
    882549 8vtu:1k (2.4) BS01 rna N/A N/A P80376 39039256
    882550 8vtu:1k (2.4) BS02 MG N/A N/A P80376 39039256
    882551 8vtu:1l (2.4) BS01 rna N/A N/A Q5SHN3 39039256
    882552 8vtu:1l (2.4) BS02 rna N/A N/A Q5SHN3 39039256
    882553 8vtu:1l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    882554 8vtu:1m (2.4) BS01 rna N/A N/A P80377 39039256
    882555 8vtu:1m (2.4) BS02 rna N/A N/A P80377 39039256
    882556 8vtu:1m (2.4) BS03 rna N/A N/A P80377 39039256
    882557 8vtu:1m (2.4) BS04 MG N/A N/A P80377 39039256
    882558 8vtu:1n (2.4) BS01 rna N/A N/A P0DOY6 39039256
    882559 8vtu:1n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    882560 8vtu:1o (2.4) BS01 rna N/A N/A Q5SJ76 39039256
    882561 8vtu:1o (2.4) BS02 rna N/A N/A Q5SJ76 39039256
    882562 8vtu:1p (2.4) BS01 rna N/A N/A Q5SJH3 39039256
    882563 8vtu:1q (2.4) BS01 rna N/A N/A P0DOY7 39039256
    882564 8vtu:1r (2.4) BS01 rna N/A N/A Q5SLQ0 39039256
    882565 8vtu:1s (2.4) BS01 rna N/A N/A Q5SHP2 39039256
    882566 8vtu:1t (2.4) BS01 rna N/A N/A P80380 39039256
    882567 8vtu:1t (2.4) BS02 MG N/A N/A P80380 39039256
    882568 8vtu:20 (2.4) BS01 rna N/A N/A P60493 39039256
    882569 8vtu:20 (2.4) BS02 rna N/A N/A P60493 39039256
    882570 8vtu:20 (2.4) BS03 rna N/A N/A P60493 39039256
    882571 8vtu:21 (2.4) BS01 rna N/A N/A P60494 39039256
    882572 8vtu:21 (2.4) BS02 rna N/A N/A P60494 39039256
    882573 8vtu:21 (2.4) BS03 MG N/A N/A P60494 39039256
    882574 8vtu:22 (2.4) BS01 rna N/A N/A Q5SHP6 39039256
    882575 8vtu:23 (2.4) BS01 rna N/A N/A Q5SHQ6 39039256
    882576 8vtu:23 (2.4) BS02 rna N/A N/A Q5SHQ6 39039256
    882577 8vtu:23 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    882578 8vtu:24 (2.4) BS01 rna N/A N/A Q5SJE1 39039256
    882579 8vtu:24 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    882580 8vtu:25 (2.4) BS01 rna N/A N/A P80339 39039256
    882581 8vtu:25 (2.4) BS02 MG N/A N/A P80339 39039256
    882582 8vtu:25 (2.4) BS03 ZN N/A N/A P80339 39039256
    882583 8vtu:26 (2.4) BS01 rna N/A N/A P35871 39039256
    882584 8vtu:26 (2.4) BS02 MG N/A N/A P35871 39039256
    882585 8vtu:26 (2.4) BS03 ZN N/A N/A P35871 39039256
    882586 8vtu:27 (2.4) BS01 rna N/A N/A P80340 39039256
    882587 8vtu:27 (2.4) BS02 MG N/A N/A P80340 39039256
    882588 8vtu:27 (2.4) BS03 MG N/A N/A P80340 39039256
    882589 8vtu:28 (2.4) BS01 rna N/A N/A Q5SKU1 39039256
    882590 8vtu:29 (2.4) BS01 rna N/A N/A Q5SHR2 39039256
    882591 8vtu:29 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    882592 8vtu:2D (2.4) BS01 rna N/A N/A P60405 39039256
    882593 8vtu:2D (2.4) BS02 rna N/A N/A P60405 39039256
    882594 8vtu:2D (2.4) BS03 MG N/A N/A P60405 39039256
    882595 8vtu:2D (2.4) BS04 MG N/A N/A P60405 39039256
    882596 8vtu:2D (2.4) BS05 MG N/A N/A P60405 39039256
    882597 8vtu:2D (2.4) BS06 MG N/A N/A P60405 39039256
    882598 8vtu:2E (2.4) BS01 rna N/A N/A Q5SHN8 39039256
    882599 8vtu:2E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    882600 8vtu:2F (2.4) BS01 rna N/A N/A Q5SHN9 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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