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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    882201 8vsa:L21 (3.7) BS01 rna ? GO:0003723 ... C3SSG2 38500588
    882202 8vsa:L22 (3.7) BS01 rna ? GO:0002181 ... P61175 38500588
    882203 8vsa:L23 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882204 8vsa:L24 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    882205 8vsa:L25 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882206 8vsa:L27 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    882207 8vsa:L27 (3.7) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    882208 8vsa:L28 (3.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 38500588
    882209 8vsa:L29 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882210 8vsa:L30 (3.7) BS01 rna ? GO:0003735 ... C3SR32 38500588
    882211 8vsa:L30 (3.7) BS02 rna ? GO:0003735 ... C3SR32 38500588
    882212 8vsa:L31 (3.7) BS01 rna ? GO:0003735 ... C3SIV2 38500588
    882213 8vsa:L32 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882214 8vsa:L33 (3.7) BS01 rna ? GO:0003735 ... C3SME7 38500588
    882215 8vsa:L34 (3.7) BS01 rna ? GO:0003735 ... B7MGC4 38500588
    882216 8vsa:L35 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    882217 8vsa:L36 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L017 38500588
    882218 8vsa:S02 (3.7) BS01 rna ? GO:0003735 ... C3TPN2 38500588
    882219 8vsa:S02 (3.7) BS02 rna ? GO:0003735 ... C3TPN2 38500588
    882220 8vsa:S03 (3.7) BS01 rna ? GO:0003676 ... B7MCS9 38500588
    882221 8vsa:S03 (3.7) BS02 rna ? GO:0003676 ... B7MCS9 38500588
    882222 8vsa:S04 (3.7) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    882223 8vsa:S05 (3.7) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    882224 8vsa:S05 (3.7) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    882225 8vsa:S06 (3.7) BS01 rna ? GO:0002181 ... P02358 38500588
    882226 8vsa:S07 (3.7) BS01 rna ? GO:0000028 ... P02359 38500588
    882227 8vsa:S08 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882228 8vsa:S09 (3.7) BS01 rna ? GO:0000028 ... C3SRY2 38500588
    882229 8vsa:S10 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    882230 8vsa:S11 (3.7) BS01 rna ? GO:0003735 ... B7MCR3 38500588
    882231 8vsa:S12 (3.7) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    882232 8vsa:S13 (3.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 38500588
    882233 8vsa:S13 (3.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 38500588
    882234 8vsa:S14 (3.7) BS01 rna ? GO:0003735 ... A0A2X1PQW4 38500588
    882235 8vsa:S15 (3.7) BS01 rna ? GO:0000028 ... C3SSQ7 38500588
    882236 8vsa:S15 (3.7) BS02 rna ? GO:0000028 ... C3SSQ7 38500588
    882237 8vsa:S16 (3.7) BS01 rna ? GO:0000028 ... C3SYP2 38500588
    882238 8vsa:S17 (3.7) BS01 rna ? GO:0000028 ... C3SQY7 38500588
    882239 8vsa:S18 (3.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38500588
    882240 8vsa:S19 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    882241 8vsa:S19 (3.7) BS02 rna N/A GO:0003723 ... N/A 38500588
    882242 8vsa:S20 (3.7) BS01 rna ? GO:0000028 ... C3TRH7 38500588
    882243 8vsa:S21 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38500588
    882244 8vsa:SMPB (3.7) BS01 rna ? GO:0003723 ... A0A2X1N680 38500588
    882245 8vsa:SMPB (3.7) BS02 rna ? GO:0003723 ... A0A2X1N680 38500588
    882246 8vsa:SMPB (3.7) BS03 rna ? GO:0003723 ... A0A2X1N680 38500588
    882247 8vsd:A (3.2) BS01 CA N/A N/A P06756 N/A
    882248 8vsd:A (3.2) BS02 CA N/A N/A P06756 N/A
    882249 8vsd:A (3.2) BS03 CA N/A N/A P06756 N/A
    882250 8vsd:A (3.2) BS04 CA N/A N/A P06756 N/A
    882251 8vsd:B (3.2) BS01 CA N/A N/A P26012 N/A
    882252 8vsd:B (3.2) BS02 MG N/A N/A P26012 N/A
    882253 8vsg:A (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38518735
    882254 8vsg:B (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38518735
    882255 8vsh:A (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    882256 8vsh:B (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    882257 8vsh:C (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    882258 8vsh:D (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    882259 8vsi:A (3.1) BS01 MG 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    882260 8vsi:A (3.1) BS02 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    882261 8vsi:A (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    882262 8vsi:B (3.1) BS01 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    882263 8vsi:B (3.1) BS02 MG 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    882264 8vsi:B (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    882265 8vsk:AAA (1.515) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    882266 8vsk:AAA (1.515) BS02 OXY N/A GO:0004601 ... Q9NAV8 38959050
    882267 8vsk:BBB (1.515) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    882268 8vsk:BBB (1.515) BS02 Y8I N/A GO:0004601 ... Q9NAV8 38959050
    882269 8vsu:B (2.86) BS01 ADP N/A GO:0004672 ... Q7RTN6 38944401
    882270 8vsw:A (-1.00) BS01 HTU N/A N/A N/A 38487244
    882271 8vsy:A (1.6) BS01 WSR N/A N/A N/A N/A
    882272 8vsy:B (1.6) BS01 WSR N/A N/A N/A N/A
    882273 8vt0:A (3.58) BS01 MG N/A N/A A0A024L722 39108302
    882274 8vt0:B (3.58) BS01 MG N/A N/A A0A024L722 39108302
    882275 8vt0:C (3.58) BS01 MG N/A N/A A0A024L722 39108302
    882276 8vt0:D (3.58) BS01 MG N/A N/A A0A024L722 39108302
    882277 8vt7:A (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    882278 8vt7:B (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    882279 8vt7:F (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    882280 8vt7:J (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    882281 8vt9:A (2.9) BS01 CMP N/A N/A G0GA88 N/A
    882282 8vt9:A (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    882283 8vt9:A (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    882284 8vt9:B (2.9) BS01 CMP N/A N/A G0GA88 N/A
    882285 8vt9:B (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    882286 8vt9:B (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    882287 8vt9:C (2.9) BS01 CMP N/A N/A G0GA88 N/A
    882288 8vt9:C (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    882289 8vt9:C (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    882290 8vt9:D (2.9) BS01 PT5 N/A N/A G0GA88 N/A
    882291 8vt9:D (2.9) BS02 CMP N/A N/A G0GA88 N/A
    882292 8vt9:D (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    882293 8vta:A (3.0) BS01 CMP N/A N/A G0GA88 N/A
    882294 8vta:A (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    882295 8vta:B (3.0) BS01 CMP N/A N/A G0GA88 N/A
    882296 8vta:B (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    882297 8vta:C (3.0) BS01 CMP N/A N/A G0GA88 N/A
    882298 8vta:C (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    882299 8vta:D (3.0) BS01 CMP N/A N/A G0GA88 N/A
    882300 8vta:D (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    882301 8vtb:A (2.5) BS01 CMP N/A N/A G0GA88 N/A
    882302 8vtb:B (2.5) BS01 CMP N/A N/A G0GA88 N/A
    882303 8vtb:C (2.5) BS01 CMP N/A N/A G0GA88 N/A
    882304 8vtb:D (2.5) BS01 CMP N/A N/A G0GA88 N/A
    882305 8vtj:L (2.81) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    882306 8vtj:L (2.81) BS02 BPH ? GO:0009772 ... Q3J1A5 N/A
    882307 8vtj:L (2.81) BS03 BCL ? GO:0009772 ... Q3J1A5 N/A
    882308 8vtj:L (2.81) BS04 FE ? GO:0009772 ... Q3J1A5 N/A
    882309 8vtj:L (2.81) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    882310 8vtj:L (2.81) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    882311 8vtj:M (2.81) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    882312 8vtj:M (2.81) BS02 BPH ? GO:0009772 ... Q3J1A6 N/A
    882313 8vtj:M (2.81) BS03 BCL ? GO:0009772 ... Q3J1A6 N/A
    882314 8vtj:M (2.81) BS04 FE ? GO:0009772 ... Q3J1A6 N/A
    882315 8vtj:M (2.81) BS05 BPH ? GO:0009772 ... Q3J1A6 N/A
    882316 8vtj:M (2.81) BS06 SPO ? GO:0009772 ... Q3J1A6 N/A
    882317 8vtj:M (2.81) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    882318 8vtk:L (3.07) BS01 BPH ? GO:0009772 ... Q3J1A5 N/A
    882319 8vtk:L (3.07) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    882320 8vtk:L (3.07) BS03 BPH ? GO:0009772 ... Q3J1A5 N/A
    882321 8vtk:L (3.07) BS04 BCL ? GO:0009772 ... Q3J1A5 N/A
    882322 8vtk:L (3.07) BS05 BCL ? GO:0009772 ... Q3J1A5 N/A
    882323 8vtk:M (3.07) BS01 BPH ? GO:0009772 ... Q3J1A6 N/A
    882324 8vtk:M (3.07) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    882325 8vtk:M (3.07) BS03 BPH ? GO:0009772 ... Q3J1A6 N/A
    882326 8vtk:M (3.07) BS04 BCL ? GO:0009772 ... Q3J1A6 N/A
    882327 8vtk:M (3.07) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    882328 8vtk:M (3.07) BS06 BCL ? GO:0009772 ... Q3J1A6 N/A
    882329 8vtl:L (3.05) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    882330 8vtl:L (3.05) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    882331 8vtl:L (3.05) BS03 BCL ? GO:0009772 ... P0C0Y8 N/A
    882332 8vtl:L (3.05) BS04 FE ? GO:0009772 ... P0C0Y8 N/A
    882333 8vtl:L (3.05) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    882334 8vtl:L (3.05) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    882335 8vtl:M (3.05) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    882336 8vtl:M (3.05) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    882337 8vtl:M (3.05) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    882338 8vtl:M (3.05) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    882339 8vtl:M (3.05) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    882340 8vtl:M (3.05) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    882341 8vtl:M (3.05) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    882342 8vtm:L (3.51) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    882343 8vtm:L (3.51) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    882344 8vtm:L (3.51) BS03 FE ? GO:0009772 ... Q3J1A5 N/A
    882345 8vtm:L (3.51) BS04 BPH ? GO:0009772 ... Q3J1A5 N/A
    882346 8vtm:L (3.51) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    882347 8vtm:L (3.51) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    882348 8vtm:M (3.51) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    882349 8vtm:M (3.51) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    882350 8vtm:M (3.51) BS03 FE ? GO:0009772 ... Q3J1A6 N/A
    882351 8vtm:M (3.51) BS04 BPH ? GO:0009772 ... Q3J1A6 N/A
    882352 8vtm:M (3.51) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    882353 8vtm:M (3.51) BS06 BPH ? GO:0009772 ... Q3J1A6 N/A
    882354 8vtm:M (3.51) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    882355 8vtn:L (3.57) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    882356 8vtn:L (3.57) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    882357 8vtn:L (3.57) BS03 FE ? GO:0009772 ... P0C0Y8 N/A
    882358 8vtn:L (3.57) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    882359 8vtn:L (3.57) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    882360 8vtn:L (3.57) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    882361 8vtn:M (3.57) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    882362 8vtn:M (3.57) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    882363 8vtn:M (3.57) BS03 FE ? GO:0009772 ... P0C0Y9 N/A
    882364 8vtn:M (3.57) BS04 BPH ? GO:0009772 ... P0C0Y9 N/A
    882365 8vtn:M (3.57) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    882366 8vtn:M (3.57) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    882367 8vtn:M (3.57) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    882368 8vto:L (3.09) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    882369 8vto:L (3.09) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    882370 8vto:L (3.09) BS03 BPH ? GO:0009772 ... P0C0Y8 N/A
    882371 8vto:L (3.09) BS04 BCL ? GO:0009772 ... P0C0Y8 N/A
    882372 8vto:L (3.09) BS05 FE ? GO:0009772 ... P0C0Y8 N/A
    882373 8vto:L (3.09) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    882374 8vto:M (3.09) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    882375 8vto:M (3.09) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    882376 8vto:M (3.09) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    882377 8vto:M (3.09) BS04 BCL ? GO:0009772 ... P0C0Y9 N/A
    882378 8vto:M (3.09) BS05 FE ? GO:0009772 ... P0C0Y9 N/A
    882379 8vto:M (3.09) BS06 SPO ? GO:0009772 ... P0C0Y9 N/A
    882380 8vto:M (3.09) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    882381 8vtq:A (2.05) BS01 HEM N/A N/A P48775 39106326
    882382 8vtq:A (2.05) BS02 ZIQ N/A N/A P48775 39106326
    882383 8vtq:A (2.05) BS03 A1ADX N/A N/A P48775 39106326
    882384 8vtq:A (2.05) BS04 A1ADX N/A N/A P48775 39106326
    882385 8vtq:B (2.05) BS01 A1ADX N/A N/A P48775 39106326
    882386 8vtq:B (2.05) BS02 HEM N/A N/A P48775 39106326
    882387 8vtq:B (2.05) BS03 ZIQ N/A N/A P48775 39106326
    882388 8vtq:B (2.05) BS04 A1ADX N/A N/A P48775 39106326
    882389 8vtq:C (2.05) BS01 HEM N/A N/A P48775 39106326
    882390 8vtq:C (2.05) BS02 ZIQ N/A N/A P48775 39106326
    882391 8vtq:C (2.05) BS03 A1ADX N/A N/A P48775 39106326
    882392 8vtq:C (2.05) BS04 A1ADX N/A N/A P48775 39106326
    882393 8vtq:D (2.05) BS01 A1ADX N/A N/A P48775 39106326
    882394 8vtq:D (2.05) BS02 HEM N/A N/A P48775 39106326
    882395 8vtq:D (2.05) BS03 ZIQ N/A N/A P48775 39106326
    882396 8vtq:D (2.05) BS04 A1ADX N/A N/A P48775 39106326
    882397 8vts:B (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    882398 8vts:D (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    882399 8vtt:D (2.45) BS01 RIO ? GO:0003677 ... Q60954 39183959
    882400 8vtu:10 (2.4) BS01 rna N/A N/A P60493 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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