Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4400 4401 4402 4403 4404 4405 4406 4407 4408 4409 4410 4411 4412 4413 4414 4415 4416 4417 4418 4419 4420 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    881801 8vnf:B (1.5) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881802 8vnf:B (1.5) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881803 8vng:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881804 8vng:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881805 8vng:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881806 8vng:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881807 8vng:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881808 8vng:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881809 8vng:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881810 8vng:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881811 8vnh:A (1.76) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881812 8vnh:A (1.76) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881813 8vnh:A (1.76) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881814 8vnh:A (1.76) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881815 8vnh:B (1.76) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881816 8vnh:B (1.76) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881817 8vnh:B (1.76) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881818 8vnh:B (1.76) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881819 8vnj:A (1.61) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881820 8vnj:A (1.61) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881821 8vnj:A (1.61) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881822 8vnj:A (1.61) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881823 8vnj:B (1.61) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881824 8vnj:B (1.61) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881825 8vnj:B (1.61) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881826 8vnj:B (1.61) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881827 8vnk:A (1.61) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881828 8vnk:A (1.61) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881829 8vnk:A (1.61) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881830 8vnk:A (1.61) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881831 8vnk:B (1.61) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881832 8vnk:B (1.61) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881833 8vnk:B (1.61) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881834 8vnk:B (1.61) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881835 8vnl:A (1.64) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881836 8vnl:A (1.64) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881837 8vnl:A (1.64) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881838 8vnl:A (1.64) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881839 8vnl:A (1.64) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881840 8vnl:B (1.64) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881841 8vnl:B (1.64) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881842 8vnl:B (1.64) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881843 8vnl:B (1.64) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881844 8vnl:B (1.64) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881845 8vnm:A (1.59) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881846 8vnm:A (1.59) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881847 8vnm:A (1.59) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881848 8vnm:A (1.59) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881849 8vnm:B (1.59) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881850 8vnm:B (1.59) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881851 8vnm:B (1.59) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881852 8vnm:B (1.59) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881853 8vnn:A (1.79) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881854 8vnn:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881855 8vnn:A (1.79) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881856 8vnn:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881857 8vnn:A (1.79) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881858 8vnn:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881859 8vnn:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881860 8vnn:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881861 8vnn:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881862 8vno:A (1.7) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881863 8vno:A (1.7) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881864 8vno:A (1.7) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881865 8vno:A (1.7) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881866 8vno:A (1.7) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881867 8vno:B (1.7) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881868 8vno:B (1.7) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881869 8vno:B (1.7) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881870 8vno:B (1.7) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881871 8vnp:A (1.79) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881872 8vnp:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881873 8vnp:A (1.79) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881874 8vnp:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881875 8vnp:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881876 8vnp:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881877 8vnp:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881878 8vnp:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881879 8vnq:A (1.93) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881880 8vnq:A (1.93) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881881 8vnq:A (1.93) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881882 8vnq:A (1.93) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881883 8vnq:B (1.93) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881884 8vnq:B (1.93) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881885 8vnq:B (1.93) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881886 8vnq:B (1.93) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881887 8vnr:A (1.98) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881888 8vnr:A (1.98) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881889 8vnr:A (1.98) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881890 8vnr:A (1.98) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881891 8vnr:B (1.98) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881892 8vnr:B (1.98) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881893 8vnr:B (1.98) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881894 8vnr:B (1.98) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881895 8vns:A (2.11) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881896 8vns:A (2.11) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881897 8vns:A (2.11) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881898 8vns:A (2.11) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881899 8vns:B (2.11) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881900 8vns:B (2.11) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881901 8vns:B (2.11) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881902 8vns:B (2.11) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881903 8vnt:A (1.62) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881904 8vnt:A (1.62) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881905 8vnt:A (1.62) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881906 8vnt:A (1.62) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881907 8vnt:A (1.62) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881908 8vnt:B (1.62) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881909 8vnt:B (1.62) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881910 8vnt:B (1.62) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881911 8vnt:B (1.62) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881912 8vnt:B (1.62) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881913 8vnu:A (2.2) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881914 8vnu:A (2.2) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881915 8vnu:A (2.2) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881916 8vnu:A (2.2) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881917 8vnu:B (2.2) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881918 8vnu:B (2.2) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881919 8vnu:B (2.2) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881920 8vnu:B (2.2) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881921 8vof:A (3.0) BS01 A1ADE N/A N/A Q9UBF8 N/A
    881922 8vof:B (3.0) BS01 GDP N/A N/A P62491 N/A
    881923 8voi:A (-1.00) BS01 MG ? N/A P11215 N/A
    881924 8vov:A (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    881925 8vov:A (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    881926 8vov:B (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    881927 8vov:B (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    881928 8vov:C (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    881929 8vov:C (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    881930 8vov:D (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    881931 8vov:D (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    881932 8vov:E (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    881933 8vov:E (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    881934 8vov:F (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    881935 8vov:F (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    881936 8vpg:A (3.05) BS01 dna N/A N/A A0A031WG99 N/A
    881937 8vpg:A (3.05) BS02 dna N/A N/A A0A031WG99 N/A
    881938 8vpg:A (3.05) BS03 dna N/A N/A A0A031WG99 N/A
    881939 8vpg:B (3.05) BS01 dna N/A N/A A0A031WG99 N/A
    881940 8vpg:B (3.05) BS02 dna N/A N/A A0A031WG99 N/A
    881941 8vpg:C (3.05) BS01 dna N/A N/A A0A031WG99 N/A
    881942 8vpg:C (3.05) BS02 dna N/A N/A A0A031WG99 N/A
    881943 8vph:A (3.18) BS01 dna N/A N/A A0A031WG99 N/A
    881944 8vph:A (3.18) BS02 dna N/A N/A A0A031WG99 N/A
    881945 8vph:A (3.18) BS03 dna N/A N/A A0A031WG99 N/A
    881946 8vph:A (3.18) BS04 Q8Y N/A N/A A0A031WG99 N/A
    881947 8vph:B (3.18) BS01 dna N/A N/A A0A031WG99 N/A
    881948 8vph:B (3.18) BS02 dna N/A N/A A0A031WG99 N/A
    881949 8vph:B (3.18) BS03 Q8Y N/A N/A A0A031WG99 N/A
    881950 8vph:C (3.18) BS01 dna N/A N/A A0A031WG99 N/A
    881951 8vph:C (3.18) BS02 dna N/A N/A A0A031WG99 N/A
    881952 8vph:C (3.18) BS03 Q8Y N/A N/A A0A031WG99 N/A
    881953 8vpi:A (2.89) BS01 dna N/A N/A A0A031WG99 N/A
    881954 8vpi:A (2.89) BS02 dna N/A N/A A0A031WG99 N/A
    881955 8vpi:A (2.89) BS03 dna N/A N/A A0A031WG99 N/A
    881956 8vpi:B (2.89) BS01 dna N/A N/A A0A031WG99 N/A
    881957 8vpi:B (2.89) BS02 dna N/A N/A A0A031WG99 N/A
    881958 8vpi:C (2.89) BS01 dna N/A N/A A0A031WG99 N/A
    881959 8vpi:C (2.89) BS02 dna N/A N/A A0A031WG99 N/A
    881960 8vpn:A (2.7) BS01 BL1 N/A N/A J3QSS1 39143061
    881961 8vpn:A (2.7) BS02 ATP N/A N/A J3QSS1 39143061
    881962 8vpn:B (2.7) BS01 ATP N/A N/A J3QSS1 39143061
    881963 8vpo:A (1.66) BS01 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    881964 8vpo:A (1.66) BS02 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    881965 8vpp:A (2.9) BS01 KLT N/A N/A J3QSS1 39143061
    881966 8vpr:A (2.7) BS01 peptide N/A N/A P52293 38811007
    881967 8vpu:A (2.1) BS01 peptide N/A N/A P52293 38811007
    881968 8vq1:A (1.3) BS01 QCV ? GO:0006355 ... Q4K977 38536910
    881969 8vq2:A (3.829) BS01 dna N/A N/A I7GY94 39140041
    881970 8vq2:A (3.829) BS02 dna N/A N/A I7GY94 39140041
    881971 8vq2:A (3.829) BS03 A1AC6 N/A N/A I7GY94 39140041
    881972 8vq2:B (3.829) BS01 dna N/A N/A I7GY94 39140041
    881973 8vq2:B (3.829) BS02 dna N/A N/A I7GY94 39140041
    881974 8vq2:B (3.829) BS03 A1AC6 N/A N/A I7GY94 39140041
    881975 8vq3:A (1.84) BS01 A1AC4 2.7.11.22 GO:0000082 ... P24941 38293178
    881976 8vq3:B (1.84) BS01 A1AC4 ? N/A P24864 38293178
    881977 8vq4:A (1.9) BS01 A1AC5 2.7.11.22 GO:0000082 ... P24941 38293178
    881978 8vq4:B (1.9) BS01 A1AC5 ? N/A P24864 38293178
    881979 8vql:A (2.29) BS01 A1ADD ? N/A P03452 38753503
    881980 8vql:B (2.29) BS01 A1ADD ? N/A P03452 38753503
    881981 8vqm:A (2.21) BS01 A1ADU ? N/A P03452 38753503
    881982 8vqm:B (2.21) BS01 A1ADU ? N/A P03452 38753503
    881983 8vqn:A (2.21) BS01 A1ADV ? N/A P03452 38753503
    881984 8vqn:B (2.21) BS01 A1ADV ? N/A P03452 38753503
    881985 8vqq:A (2.05) BS01 A1ADC ? N/A P03452 38753503
    881986 8vqq:B (2.05) BS01 A1ADC ? N/A P03452 38753503
    881987 8vqr:A (2.565) BS01 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    881988 8vqr:A (2.565) BS02 BMA 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    881989 8vqr:A (2.565) BS03 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    881990 8vqr:A (2.565) BS04 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    881991 8vqr:B (2.565) BS01 MAN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    881992 8vqr:B (2.565) BS02 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    881993 8vqr:B (2.565) BS03 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    881994 8vqw:C (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    881995 8vqw:D (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    881996 8vqx:A (1.35) BS01 A1ADM N/A N/A P0DTD1 38518735
    881997 8vqy:A (2.82) BS01 ABU N/A N/A P47870 38898000
    881998 8vqy:A (2.82) BS02 A1ADG N/A N/A P47870 38898000
    881999 8vqy:B (2.82) BS01 ABU N/A N/A P14867 38898000
    882000 8vqy:B (2.82) BS02 A1ADG N/A N/A P14867 38898000
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218