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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    881401 8vk4:K (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881402 8vk4:K (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    881403 8vk4:L (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881404 8vk4:L (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    881405 8vk4:M (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881406 8vk4:M (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    881407 8vk4:N (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881408 8vk4:N (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    881409 8vk4:O (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881410 8vk4:O (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    881411 8vk4:P (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881412 8vk4:P (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    881413 8vka:A (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    881414 8vka:A (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    881415 8vka:B (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    881416 8vka:B (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    881417 8vka:C (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    881418 8vka:C (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    881419 8vkb:A (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    881420 8vkb:A (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    881421 8vkb:B (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    881422 8vkb:B (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    881423 8vkb:C (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    881424 8vkb:C (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    881425 8vkc:AAA (2.03) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    881426 8vkc:AAA (2.03) BS02 NPO N/A GO:0004601 ... Q9NAV8 38959050
    881427 8vkc:BBB (2.03) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    881428 8vkc:BBB (2.03) BS02 NPO N/A GO:0004601 ... Q9NAV8 38959050
    881429 8vkd:AAA (1.4) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    881430 8vkd:AAA (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    881431 8vkd:BBB (1.4) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    881432 8vkd:BBB (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    881433 8vkf:A (1.7) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    881434 8vkf:A (1.7) BS02 LVK ? GO:0004497 ... Q2IU02 N/A
    881435 8vkj:A (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    881436 8vkj:B (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    881437 8vkt:A (1.398) BS01 ZN 3.5.1.18 GO:0006526 ... A0A1S8KJG1 38740150
    881438 8vkt:A (1.398) BS02 ZN 3.5.1.18 GO:0006526 ... A0A1S8KJG1 38740150
    881439 8vku:A (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881440 8vku:B (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881441 8vku:C (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881442 8vku:D (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881443 8vku:E (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881444 8vku:F (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881445 8vkz:A (2.133) BS01 peptide ? N/A P04150 38516584
    881446 8vkz:A (2.133) BS02 A1ACE ? N/A P04150 38516584
    881447 8vkz:B (2.133) BS01 peptide ? N/A P04150 38516584
    881448 8vkz:B (2.133) BS02 A1ACE ? N/A P04150 38516584
    881449 8vl0:A (1.837) BS01 LVC ? GO:0004497 ... Q2IU02 N/A
    881450 8vl0:A (1.837) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    881451 8vl7:A (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881452 8vl7:A (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881453 8vl7:A (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881454 8vl7:B (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881455 8vl7:B (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881456 8vl7:B (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881457 8vl7:C (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881458 8vl7:C (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881459 8vl7:C (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881460 8vl7:D (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881461 8vl7:D (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881462 8vl7:D (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881463 8vl7:E (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881464 8vl7:E (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881465 8vl7:E (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881466 8vl7:F (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881467 8vl7:F (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881468 8vl7:F (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881469 8vl7:G (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881470 8vl7:G (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881471 8vl7:G (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881472 8vl7:H (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881473 8vl7:H (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881474 8vl7:H (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    881475 8vl8:A (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    881476 8vl8:B (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    881477 8vl8:C (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    881478 8vl8:D (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    881479 8vl8:E (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    881480 8vl9:A (2.5) BS01 A1ACI ? N/A P40337 N/A
    881481 8vl9:D (2.5) BS01 A1ACI 1.13.11.20 GO:0000097 ... Q16878 N/A
    881482 8vl9:D (2.5) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    881483 8vlb:A (2.9) BS01 3JF ? N/A P40337 N/A
    881484 8vlb:D (2.9) BS01 3JF 1.13.11.20 GO:0000097 ... Q16878 N/A
    881485 8vlb:D (2.9) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    881486 8vlg:A (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    881487 8vlg:A (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    881488 8vlg:B (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    881489 8vlg:B (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    881490 8vli:A (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    881491 8vli:A (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    881492 8vli:B (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    881493 8vli:B (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    881494 8vlj:A (1.39) BS01 ZN N/A N/A Q12178 39146405
    881495 8vlj:B (1.39) BS01 ZN N/A N/A Q12178 39146405
    881496 8vlk:A (1.76) BS01 ZN N/A N/A Q12178 39146405
    881497 8vlk:B (1.76) BS01 ZN N/A N/A Q12178 39146405
    881498 8vlk:C (1.76) BS01 ZN N/A N/A Q12178 39146405
    881499 8vlk:D (1.76) BS01 ZN N/A N/A Q12178 39146405
    881500 8vll:A (1.67) BS01 ZN N/A N/A Q12178 39146405
    881501 8vll:B (1.67) BS01 ZN N/A N/A Q12178 39146405
    881502 8vlm:A (2.67) BS01 ZN N/A N/A Q12178 39146405
    881503 8vlm:B (2.67) BS01 ZN N/A N/A Q12178 39146405
    881504 8vlm:C (2.67) BS01 ZN N/A N/A Q12178 39146405
    881505 8vlm:D (2.67) BS01 ZN N/A N/A Q12178 39146405
    881506 8vlq:A (2.07) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    881507 8vlq:A (2.07) BS02 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    881508 8vlq:A (2.07) BS03 A1AFY 1.1.1.88 GO:0004420 ... P13702 38327055
    881509 8vlq:A (2.07) BS04 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    881510 8vlq:A (2.07) BS05 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    881511 8vlq:B (2.07) BS01 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    881512 8vlq:B (2.07) BS02 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    881513 8vlq:B (2.07) BS03 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    881514 8vlq:B (2.07) BS04 MEV 1.1.1.88 GO:0004420 ... P13702 38327055
    881515 8vls:A (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881516 8vls:B (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881517 8vls:C (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881518 8vls:D (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881519 8vls:E (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881520 8vls:F (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881521 8vls:G (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881522 8vls:H (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881523 8vls:I (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881524 8vls:J (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881525 8vls:K (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881526 8vls:L (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    881527 8vlu:A (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    881528 8vlu:B (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    881529 8vlx:A (2.6) BS01 A1ACS ? GO:0000132 ... P42858 N/A
    881530 8vlx:B (2.6) BS01 A1ACS ? GO:0003674 ... P23610 N/A
    881531 8vm2:A (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    881532 8vm2:A (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    881533 8vm2:A (1.74) BS03 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    881534 8vm2:A (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    881535 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    881536 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    881537 8vm2:B (1.74) BS03 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    881538 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    881539 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    881540 8vm2:C (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    881541 8vm8:H (1.54) BS01 rna N/A N/A N/A 39036953
    881542 8vm8:L (1.54) BS01 rna N/A N/A N/A 39036953
    881543 8vm9:A (2.2) BS01 rna N/A N/A N/A 39036953
    881544 8vm9:B (2.2) BS01 rna N/A N/A N/A 39036953
    881545 8vm9:B (2.2) BS02 rna N/A N/A N/A 39036953
    881546 8vm9:H (2.2) BS01 rna N/A N/A N/A 39036953
    881547 8vm9:L (2.2) BS01 rna N/A N/A N/A 39036953
    881548 8vm9:L (2.2) BS02 rna N/A N/A N/A 39036953
    881549 8vma:A (2.54) BS01 rna N/A N/A N/A 39036953
    881550 8vma:B (2.54) BS01 rna N/A N/A N/A 39036953
    881551 8vma:B (2.54) BS02 rna N/A N/A N/A 39036953
    881552 8vma:H (2.54) BS01 rna N/A N/A N/A 39036953
    881553 8vma:L (2.54) BS01 rna N/A N/A N/A 39036953
    881554 8vma:L (2.54) BS02 rna N/A N/A N/A 39036953
    881555 8vmb:H (2.97) BS01 rna N/A N/A N/A 39036953
    881556 8vmb:L (2.97) BS01 rna N/A N/A N/A 39036953
    881557 8vme:A (2.3) BS01 peptide N/A N/A Q9WV60 39226374
    881558 8vme:A (2.3) BS02 peptide N/A N/A Q9WV60 39226374
    881559 8vme:A (2.3) BS03 ADP N/A N/A Q9WV60 39226374
    881560 8vme:A (2.3) BS04 MG N/A N/A Q9WV60 39226374
    881561 8vmf:A (2.5) BS01 peptide N/A N/A Q9WV60 39226374
    881562 8vmf:A (2.5) BS02 peptide N/A N/A Q9WV60 39226374
    881563 8vmf:A (2.5) BS03 MG N/A N/A Q9WV60 39226374
    881564 8vmf:A (2.5) BS04 AF3 N/A N/A Q9WV60 39226374
    881565 8vmf:A (2.5) BS05 ADP N/A N/A Q9WV60 39226374
    881566 8vmg:A (2.45) BS01 ADP N/A N/A Q9WV60 39226374
    881567 8vmg:A (2.45) BS02 MG N/A N/A Q9WV60 39226374
    881568 8vmo:A (1.68) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881569 8vmo:A (1.68) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881570 8vmo:A (1.68) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881571 8vmo:A (1.68) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881572 8vmo:B (1.68) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881573 8vmo:B (1.68) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881574 8vmo:B (1.68) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881575 8vmo:B (1.68) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881576 8vmp:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881577 8vmp:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881578 8vmp:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881579 8vmp:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881580 8vmp:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881581 8vmp:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881582 8vmp:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881583 8vmp:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881584 8vmq:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881585 8vmq:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881586 8vmq:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881587 8vmq:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881588 8vmq:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881589 8vmq:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881590 8vmq:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881591 8vmq:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881592 8vmr:A (1.5) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881593 8vmr:A (1.5) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881594 8vmr:A (1.5) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881595 8vmr:A (1.5) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881596 8vmr:B (1.5) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881597 8vmr:B (1.5) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881598 8vmr:B (1.5) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881599 8vmr:B (1.5) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881600 8vms:A (1.42) BS01 dna N/A GO:0004519 ... Q94702 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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