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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    881201 8vhq:B (3.4) BS01 DTP N/A N/A P00452 39164005
    881202 8vhq:B (3.4) BS02 DTP N/A N/A P00452 39164005
    881203 8vhq:B (3.4) BS03 ATP N/A N/A P00452 39164005
    881204 8vhq:B (3.4) BS04 DTP N/A N/A P00452 39164005
    881205 8vhq:C (3.4) BS01 DTP N/A N/A P00452 39164005
    881206 8vhq:C (3.4) BS02 ATP N/A N/A P00452 39164005
    881207 8vhq:C (3.4) BS03 DTP N/A N/A P00452 39164005
    881208 8vhq:C (3.4) BS04 DTP N/A N/A P00452 39164005
    881209 8vhq:D (3.4) BS01 DTP N/A N/A P00452 39164005
    881210 8vhq:D (3.4) BS02 DTP N/A N/A P00452 39164005
    881211 8vhq:D (3.4) BS03 ATP N/A N/A P00452 39164005
    881212 8vhq:D (3.4) BS04 DTP N/A N/A P00452 39164005
    881213 8vhr:A (3.55) BS01 DTP N/A N/A P00452 39164005
    881214 8vhr:A (3.55) BS02 GTP N/A N/A P00452 39164005
    881215 8vhr:A (3.55) BS03 DTP N/A N/A P00452 39164005
    881216 8vhr:A (3.55) BS04 DTP N/A N/A P00452 39164005
    881217 8vhr:B (3.55) BS01 DTP N/A N/A P00452 39164005
    881218 8vhr:B (3.55) BS02 DTP N/A N/A P00452 39164005
    881219 8vhr:B (3.55) BS03 GTP N/A N/A P00452 39164005
    881220 8vhr:B (3.55) BS04 DTP N/A N/A P00452 39164005
    881221 8vhr:C (3.55) BS01 DTP N/A N/A P00452 39164005
    881222 8vhr:C (3.55) BS02 GTP N/A N/A P00452 39164005
    881223 8vhr:C (3.55) BS03 DTP N/A N/A P00452 39164005
    881224 8vhr:D (3.55) BS01 DTP N/A N/A P00452 39164005
    881225 8vhr:D (3.55) BS02 DTP N/A N/A P00452 39164005
    881226 8vhr:D (3.55) BS03 GTP N/A N/A P00452 39164005
    881227 8vhr:D (3.55) BS04 DTP N/A N/A P00452 39164005
    881228 8vhu:A (2.1) BS01 DTP N/A N/A P00452
    P69924    		 39164005
    881229 8vhu:A (2.1) BS02 DTP N/A N/A P00452
    P69924    		 39164005
    881230 8vhu:A (2.1) BS03 DTP N/A N/A P00452
    P69924    		 39164005
    881231 8vhu:B (2.1) BS01 DTP N/A N/A P00452
    P69924    		 39164005
    881232 8vhu:B (2.1) BS02 DTP N/A N/A P00452
    P69924    		 39164005
    881233 8vhw:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    881234 8vhw:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    881235 8vhy:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    881236 8vhy:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    881237 8vi8:A (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    881238 8vi8:A (3.21) BS02 X5Z N/A N/A C3THM2 39088332
    881239 8vi8:B (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    881240 8vi8:C (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    881241 8vi8:D (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    881242 8vi8:E (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    881243 8vi8:F (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    881244 8vic:A (3.48) BS01 A1AA3 N/A N/A Q9BSA9 N/A
    881245 8vie:A (3.52) BS01 A1AB0 N/A N/A Q9BSA9 N/A
    881246 8vig:A (1.6) BS01 FE N/A N/A A0A978T1Y9 39216472
    881247 8vig:A (1.6) BS02 AVJ N/A N/A A0A978T1Y9 39216472
    881248 8vih:A (1.55) BS01 FE N/A N/A B1WTS6 39216472
    881249 8vih:A (1.55) BS02 AVJ N/A N/A B1WTS6 39216472
    881250 8vih:B (1.55) BS01 FE N/A N/A B1WTS6 39216472
    881251 8vih:B (1.55) BS02 AVJ N/A N/A B1WTS6 39216472
    881252 8vii:A (1.621) BS01 MN N/A N/A B1WTS6 39216472
    881253 8vii:A (1.621) BS02 AVJ N/A N/A B1WTS6 39216472
    881254 8vii:A (1.621) BS03 CYS N/A N/A B1WTS6 39216472
    881255 8vii:B (1.621) BS01 MN N/A N/A B1WTS6 39216472
    881256 8vii:B (1.621) BS02 AVJ N/A N/A B1WTS6 39216472
    881257 8vii:B (1.621) BS03 CYS N/A N/A B1WTS6 39216472
    881258 8vij:A (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    881259 8vij:B (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    881260 8vij:C (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    881261 8vij:D (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    881262 8vik:A (1.961) BS01 FE N/A N/A B1WTS6 39216472
    881263 8vik:B (1.961) BS01 FE N/A N/A B1WTS6 39216472
    881264 8vil:A (1.95) BS01 FE N/A N/A B1WTS6 39216472
    881265 8vil:A (1.95) BS02 AVI N/A N/A B1WTS6 39216472
    881266 8vil:B (1.95) BS01 FE N/A N/A B1WTS6 39216472
    881267 8vis:B (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    881268 8vis:D (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    881269 8vis:D (1.59) BS02 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    881270 8vis:F (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    881271 8vis:H (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    881272 8vis:H (1.59) BS02 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    881273 8viw:A (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    881274 8viw:A (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    881275 8viw:A (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    881276 8viw:A (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    881277 8viw:A (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    881278 8viw:A (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    881279 8viw:A (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    881280 8viw:B (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    881281 8viw:B (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    881282 8viw:B (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    881283 8viw:B (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    881284 8viw:B (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    881285 8viw:B (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    881286 8viw:B (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    881287 8viw:C (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    881288 8viw:C (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    881289 8viw:C (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    881290 8viw:C (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    881291 8viw:C (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    881292 8viw:C (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    881293 8viw:C (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    881294 8viw:D (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    881295 8viw:D (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    881296 8viw:D (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    881297 8viw:D (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    881298 8viw:D (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    881299 8viw:D (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    881300 8viw:D (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    881301 8vj0:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    881302 8vj0:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    881303 8vj3:A (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    881304 8vj3:B (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    881305 8vj3:C (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    881306 8vj3:D (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    881307 8vj4:A (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    881308 8vj4:B (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    881309 8vj5:A (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    881310 8vj5:B (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    881311 8vj6:A (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    881312 8vj6:B (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    881313 8vj6:C (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    881314 8vj6:D (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    881315 8vj7:A (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    881316 8vj7:A (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    881317 8vj7:B (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    881318 8vj7:B (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    881319 8vj7:C (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    881320 8vj7:C (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    881321 8vj7:D (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    881322 8vj7:D (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    881323 8vj8:A (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    881324 8vj8:B (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    881325 8vjj:A (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881326 8vjj:B (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881327 8vjj:C (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881328 8vjj:D (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881329 8vjk:A (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881330 8vjk:A (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881331 8vjk:A (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881332 8vjk:A (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881333 8vjk:A (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881334 8vjk:B (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881335 8vjk:B (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881336 8vjk:B (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881337 8vjk:B (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881338 8vjk:B (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881339 8vjk:C (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881340 8vjk:C (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881341 8vjk:C (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881342 8vjk:C (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881343 8vjk:C (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881344 8vjk:D (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881345 8vjk:D (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881346 8vjk:D (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881347 8vjk:D (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881348 8vjk:D (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881349 8vjn:A (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    881350 8vjn:B (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    881351 8vjn:C (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    881352 8vjn:D (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    881353 8vjo:A (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    881354 8vjo:B (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    881355 8vjo:C (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    881356 8vjp:A (1.13) BS01 peptide ? GO:0042981 ... Q07820 38695666
    881357 8vju:A (1.99) BS01 peptide N/A N/A Q9BYT8 39117724
    881358 8vju:A (1.99) BS02 ZN N/A N/A Q9BYT8 39117724
    881359 8vjv:A (2.12) BS01 peptide N/A N/A Q9BYT8 39117724
    881360 8vjv:A (2.12) BS02 ZN N/A N/A Q9BYT8 39117724
    881361 8vjw:A (2.491) BS01 peptide N/A N/A Q9BYT8 39117724
    881362 8vjw:A (2.491) BS02 peptide N/A N/A Q9BYT8 39117724
    881363 8vjw:A (2.491) BS03 ZN N/A N/A Q9BYT8 39117724
    881364 8vjw:B (2.491) BS01 peptide N/A N/A Q9BYT8 39117724
    881365 8vjw:B (2.491) BS02 peptide N/A N/A Q9BYT8 39117724
    881366 8vjw:B (2.491) BS03 ZN N/A N/A Q9BYT8 39117724
    881367 8vjx:A (2.89) BS01 peptide N/A N/A Q9BYT8 39117724
    881368 8vjx:A (2.89) BS02 ZN N/A N/A Q9BYT8 39117724
    881369 8vjy:A (1.95) BS01 peptide N/A N/A Q9BYT8 39117724
    881370 8vjy:A (1.95) BS02 ZN N/A N/A Q9BYT8 39117724
    881371 8vjy:C (1.95) BS01 peptide N/A N/A Q9BYT8 39117724
    881372 8vjy:C (1.95) BS02 ZN N/A N/A Q9BYT8 39117724
    881373 8vk3:A (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881374 8vk3:B (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881375 8vk3:C (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881376 8vk3:D (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881377 8vk4:A (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881378 8vk4:A (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881379 8vk4:A (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881380 8vk4:A (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881381 8vk4:A (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881382 8vk4:B (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881383 8vk4:B (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881384 8vk4:B (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881385 8vk4:B (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881386 8vk4:B (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881387 8vk4:C (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881388 8vk4:C (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881389 8vk4:C (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881390 8vk4:C (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881391 8vk4:C (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881392 8vk4:D (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    881393 8vk4:D (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    881394 8vk4:D (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    881395 8vk4:D (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    881396 8vk4:D (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    881397 8vk4:I (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881398 8vk4:I (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    881399 8vk4:J (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    881400 8vk4:J (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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