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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    880801 8vct:E (3.83) BS02 MG N/A GO:0003677 ... P05846 38834067
    880802 8vct:F (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    880803 8vct:G (3.83) BS01 AGS N/A GO:0003677 ... P05846 38834067
    880804 8vct:X (3.83) BS01 dna N/A N/A P13991 38834067
    880805 8vct:X (3.83) BS02 ZN N/A N/A P13991 38834067
    880806 8vct:Y (3.83) BS01 ZN N/A N/A P13991 38834067
    880807 8vcv:A (2.8) BS01 FUC N/A N/A P08669 39243373
    880808 8vcv:A (2.8) BS02 MAN N/A N/A P08669 39243373
    880809 8vcv:B (2.8) BS01 MAN N/A N/A P08669 39243373
    880810 8vcv:C (2.8) BS01 MAN N/A N/A P08669 39243373
    880811 8vcw:A (1.35) BS01 SAM 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    880812 8vcw:A (1.35) BS02 Q46 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    880813 8vcw:A (1.35) BS03 SF4 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    880814 8vcw:A (1.35) BS04 DTB 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    880815 8vcx:A (2.59) BS01 peptide N/A N/A Q30069 39074636
    880816 8vcx:B (2.59) BS01 peptide N/A N/A O19707 39074636
    880817 8vcy:A (2.6) BS01 peptide N/A N/A Q30069 39074636
    880818 8vcy:B (2.6) BS01 peptide N/A N/A O19707 39074636
    880819 8vcy:D (2.6) BS01 peptide N/A N/A N/A 39074636
    880820 8vcy:E (2.6) BS01 peptide N/A N/A N/A 39074636
    880821 8vd2:A (2.9) BS01 peptide N/A N/A Q30069 39074636
    880822 8vd2:B (2.9) BS01 peptide N/A N/A O19707 39074636
    880823 8vd2:D (2.9) BS01 peptide N/A N/A N/A 39074636
    880824 8vd2:E (2.9) BS01 peptide N/A N/A N/A 39074636
    880825 8vd8:A (3.2) BS01 peptide ? N/A A4ZFA8 38135177
    880826 8vda:A (2.02) BS01 COA 2.3.1.180
    2.3.1.300    		 GO:0004315 ... O34746 38310992
    880827 8vdc:A (3.5) BS01 peptide ? N/A A4ZFA8 38135177
    880828 8vdd:A (2.6) BS01 peptide N/A N/A Q30069 39074636
    880829 8vdd:B (2.6) BS01 peptide N/A N/A O19707 39074636
    880830 8vdh:F (1.64) BS01 dna N/A N/A P17947 N/A
    880831 8vdh:F (1.64) BS02 dna N/A N/A P17947 N/A
    880832 8vdi:F (1.93) BS01 dna N/A N/A P17947 N/A
    880833 8vdi:F (1.93) BS02 dna N/A N/A P17947 N/A
    880834 8vdj:A (2.002) BS01 A1AA0 N/A N/A P0DTD1 39090095
    880835 8vdj:B (2.002) BS01 A1AA0 N/A N/A P0DTD1 39090095
    880836 8vdk:A (1.8) BS01 CA N/A N/A Q99W47 N/A
    880837 8vdk:A (1.8) BS02 CA N/A N/A Q99W47 N/A
    880838 8vdk:A (1.8) BS03 CA N/A N/A Q99W47 N/A
    880839 8vdk:A (1.8) BS04 CA N/A N/A Q99W47 N/A
    880840 8vdk:A (1.8) BS05 CA N/A N/A Q99W47 N/A
    880841 8vdn:A (2.39) BS01 dna 6.5.1.1 N/A P18858 38522520
    880842 8vdn:A (2.39) BS02 dna 6.5.1.1 N/A P18858 38522520
    880843 8vdn:A (2.39) BS03 dna 6.5.1.1 N/A P18858 38522520
    880844 8vdn:A (2.39) BS04 AMP 6.5.1.1 N/A P18858 38522520
    880845 8vds:A (2.79) BS01 dna 6.5.1.1 N/A P18858 38522520
    880846 8vds:A (2.79) BS02 dna 6.5.1.1 N/A P18858 38522520
    880847 8vdt:A (2.78) BS01 dna 6.5.1.1 N/A P18858 38522520
    880848 8vdt:A (2.78) BS02 dna 6.5.1.1 N/A P18858 38522520
    880849 8vdu:A (3.5) BS01 peptide N/A N/A Q30069 39074636
    880850 8vdu:B (3.5) BS01 peptide N/A N/A O19707 39074636
    880851 8vdu:D (3.5) BS01 peptide N/A N/A Q30069 39074636
    880852 8vdu:E (3.5) BS01 peptide N/A N/A O19707 39074636
    880853 8vdu:G (3.5) BS01 peptide N/A N/A Q30069 39074636
    880854 8vdu:H (3.5) BS01 peptide N/A N/A O19707 39074636
    880855 8vdu:J (3.5) BS01 peptide N/A N/A Q30069 39074636
    880856 8vdu:K (3.5) BS01 peptide N/A N/A O19707 39074636
    880857 8vdw:A (1.807) BS01 Q46 2.8.1.6 GO:0003824 ... N/A 38215281
    880858 8vdw:A (1.807) BS02 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    880859 8vdw:A (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    880860 8vdw:A (1.807) BS04 DTB 2.8.1.6 GO:0003824 ... N/A 38215281
    880861 8vdw:B (1.807) BS01 Q46 2.8.1.6 GO:0003824 ... N/A 38215281
    880862 8vdw:B (1.807) BS02 DTB 2.8.1.6 GO:0003824 ... N/A 38215281
    880863 8vdw:B (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    880864 8vdw:B (1.807) BS04 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    880865 8ve0:A (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880866 8ve0:B (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880867 8ve0:C (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880868 8ve0:D (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880869 8ve1:A (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880870 8ve1:B (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880871 8ve1:C (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880872 8ve1:D (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    880873 8ve5:B (3.4) BS01 P2C ? GO:0005179 ... P02766 N/A
    880874 8ve5:D (3.4) BS01 P2C ? GO:0005179 ... P02766 N/A
    880875 8ve6:B (4.1) BS01 P2C ? GO:0005179 ... P02766 N/A
    880876 8ve6:D (4.1) BS01 P2C ? GO:0005179 ... P02766 N/A
    880877 8ve8:A (2.8) BS01 MAN N/A N/A P08669 39243373
    880878 8ve8:B (2.8) BS01 MAN N/A N/A P08669 39243373
    880879 8ve8:C (2.8) BS01 MAN N/A N/A P08669 39243373
    880880 8vec:A (2.0) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 39043718
    880881 8veh:C (2.6) BS01 GLY ? GO:0030288 ... Q1RKI7 N/A
    880882 8ven:A (1.8) BS01 A1ADP 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    880883 8veo:A (2.03) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    880884 8vep:A (2.002) BS01 JPP 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    880885 8veq:A (2.4) BS01 59H 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    880886 8ves:A (3.22) BS01 rna N/A N/A P23839 39180400
    880887 8ves:B (3.22) BS01 rna N/A N/A P23839 39180400
    880888 8ves:F (3.22) BS01 rna N/A N/A P23839 39180400
    880889 8vet:A (2.63) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    880890 8vet:A (2.63) BS02 A1AAS 2.1.1.320 GO:0000387 ... O14744 38595098
    880891 8veu:A (2.46) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    880892 8veu:A (2.46) BS02 A1AAT 2.1.1.320 GO:0000387 ... O14744 38595098
    880893 8vev:C (3.06) BS01 6MD N/A N/A N/A N/A
    880894 8vev:D (3.06) BS01 6MD N/A N/A N/A N/A
    880895 8vev:H (3.06) BS01 6MD N/A N/A N/A N/A
    880896 8vev:L (3.06) BS01 6MD N/A N/A N/A N/A
    880897 8vew:A (2.69) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    880898 8vew:A (2.69) BS02 A1AAU 2.1.1.320 GO:0000387 ... O14744 38595098
    880899 8vex:A (2.79) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    880900 8vex:A (2.79) BS02 A1AAR 2.1.1.320 GO:0000387 ... O14744 38595098
    880901 8vey:A (2.44) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    880902 8vey:A (2.44) BS02 A1AAV 2.1.1.320 GO:0000387 ... O14744 38595098
    880903 8vf0:A (2.028) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    880904 8vf0:A (2.028) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    880905 8vf3:A (1.469) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    880906 8vf3:A (1.469) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    880907 8vf6:A (2.7) BS01 A1AAY 2.7.11.1 N/A Q9BYT3 38781365
    880908 8vf6:B (2.7) BS01 A1AAY 2.7.11.1 N/A Q9BYT3 38781365
    880909 8vf8:A (1.98) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880910 8vf8:A (1.98) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880911 8vf8:A (1.98) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880912 8vf9:A (1.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880913 8vf9:A (1.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880914 8vf9:A (1.9) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880915 8vfa:A (2.05) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880916 8vfa:A (2.05) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880917 8vfa:A (2.05) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880918 8vfa:A (2.05) BS04 G2P 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880919 8vfa:A (2.05) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880920 8vfa:A (2.05) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880921 8vfb:A (2.64) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880922 8vfb:A (2.64) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880923 8vfb:A (2.64) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880924 8vfb:A (2.64) BS04 G2P 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880925 8vfb:A (2.64) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880926 8vfb:A (2.64) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880927 8vfc:A (2.48) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880928 8vfc:A (2.48) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880929 8vfc:A (2.48) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880930 8vfd:A (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880931 8vfd:A (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880932 8vfd:A (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880933 8vfd:A (2.1) BS04 A1ACD 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880934 8vfd:A (2.1) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880935 8vfd:A (2.1) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880936 8vfe:A (2.09) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880937 8vfe:A (2.09) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880938 8vfe:A (2.09) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880939 8vff:A (1.69) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880940 8vff:A (1.69) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880941 8vff:A (1.69) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880942 8vfg:A (1.54) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880943 8vfg:A (1.54) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880944 8vfg:A (1.54) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880945 8vfh:A (2.01) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880946 8vfh:A (2.01) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880947 8vfh:A (2.01) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880948 8vfh:A (2.01) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880949 8vfh:A (2.01) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880950 8vfh:A (2.01) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880951 8vfi:A (1.77) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880952 8vfi:A (1.77) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880953 8vfi:A (1.77) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880954 8vfi:A (1.77) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880955 8vfi:A (1.77) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880956 8vfi:A (1.77) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880957 8vfj:A (2.14) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880958 8vfj:A (2.14) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880959 8vfj:A (2.14) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    880960 8vfp:A (2.7) BS01 4MA ? GO:0004497 ... Q2IU02 N/A
    880961 8vfp:A (2.7) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    880962 8vfr:A (2.018) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    880963 8vfr:A (2.018) BS02 4MA ? GO:0004497 ... Q2IU02 N/A
    880964 8vfr:A (2.018) BS03 E5X ? GO:0004497 ... Q2IU02 N/A
    880965 8vfx:A (2.65) BS01 dna N/A N/A P68431 39121853
    880966 8vfx:A (2.65) BS02 dna N/A N/A P68431 39121853
    880967 8vfx:B (2.65) BS01 dna N/A N/A P62805 39121853
    880968 8vfx:B (2.65) BS02 dna N/A N/A P62805 39121853
    880969 8vfx:C (2.65) BS01 dna N/A N/A P04908 39121853
    880970 8vfx:C (2.65) BS02 dna N/A N/A P04908 39121853
    880971 8vfx:D (2.65) BS01 dna N/A N/A P06899 39121853
    880972 8vfx:D (2.65) BS02 dna N/A N/A P06899 39121853
    880973 8vfx:E (2.65) BS01 dna N/A N/A P68431 39121853
    880974 8vfx:E (2.65) BS02 dna N/A N/A P68431 39121853
    880975 8vfx:F (2.65) BS01 dna N/A N/A P62805 39121853
    880976 8vfx:F (2.65) BS02 dna N/A N/A P62805 39121853
    880977 8vfx:G (2.65) BS01 dna N/A N/A P04908 39121853
    880978 8vfx:G (2.65) BS02 dna N/A N/A P04908 39121853
    880979 8vfx:H (2.65) BS01 dna N/A N/A P06899 39121853
    880980 8vfx:H (2.65) BS02 dna N/A N/A P06899 39121853
    880981 8vfy:A (2.89) BS01 dna N/A N/A P68431 39121853
    880982 8vfy:A (2.89) BS02 dna N/A N/A P68431 39121853
    880983 8vfy:B (2.89) BS01 dna N/A N/A P62805 39121853
    880984 8vfy:B (2.89) BS02 dna N/A N/A P62805 39121853
    880985 8vfy:C (2.89) BS01 dna N/A N/A P04908 39121853
    880986 8vfy:C (2.89) BS02 dna N/A N/A P04908 39121853
    880987 8vfy:D (2.89) BS01 dna N/A N/A P06899 39121853
    880988 8vfy:D (2.89) BS02 dna N/A N/A P06899 39121853
    880989 8vfy:E (2.89) BS01 dna N/A N/A P68431 39121853
    880990 8vfy:E (2.89) BS02 dna N/A N/A P68431 39121853
    880991 8vfy:F (2.89) BS01 dna N/A N/A P62805 39121853
    880992 8vfy:F (2.89) BS02 dna N/A N/A P62805 39121853
    880993 8vfy:G (2.89) BS01 dna N/A N/A P04908 39121853
    880994 8vfy:G (2.89) BS02 dna N/A N/A P04908 39121853
    880995 8vfy:H (2.89) BS01 dna N/A N/A P06899 39121853
    880996 8vfy:H (2.89) BS02 dna N/A N/A P06899 39121853
    880997 8vfy:O (2.89) BS01 dna N/A N/A P55317 39121853
    880998 8vfy:O (2.89) BS02 dna N/A N/A P55317 39121853
    880999 8vfz:A (4.1) BS01 dna N/A N/A P68431 39121853
    881000 8vfz:A (4.1) BS02 dna N/A N/A P68431 39121853
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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