Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4394 4395 4396 4397 4398 4399 4400 4401 4402 4403 4404 4405 4406 4407 4408 4409 4410 4411 4412 4413 4414 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    880601 8val:C (3.7) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880602 8val:C (3.7) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    880603 8val:D (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880604 8val:D (3.7) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880605 8val:D (3.7) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880606 8val:D (3.7) BS04 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880607 8val:E (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    880608 8val:E (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    880609 8vam:B (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880610 8vam:B (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880611 8vam:B (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880612 8vam:B (3.9) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    880613 8vam:C (3.9) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880614 8vam:C (3.9) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880615 8vam:C (3.9) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880616 8vam:D (3.9) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880617 8vam:D (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880618 8vam:D (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880619 8vam:D (3.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880620 8vam:E (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    880621 8vap:B (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880622 8vap:B (3.0) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880623 8vap:B (3.0) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880624 8vap:C (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880625 8vap:C (3.0) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880626 8vap:C (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880627 8vap:D (3.0) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880628 8vap:D (3.0) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880629 8vap:D (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880630 8vap:D (3.0) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    880631 8vap:D (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880632 8vap:E (3.0) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    880633 8vaq:A (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    880634 8vaq:A (3.8) BS02 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    880635 8vaq:B (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880636 8vaq:B (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880637 8vaq:B (3.8) BS03 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    880638 8vaq:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880639 8vaq:C (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880640 8vaq:C (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880641 8vaq:C (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880642 8vaq:D (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880643 8vaq:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880644 8vaq:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880645 8vaq:D (3.8) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    880646 8vaq:D (3.8) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880647 8vaq:E (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    880648 8vaq:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    880649 8var:A (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    880650 8var:B (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880651 8var:B (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880652 8var:B (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880653 8var:B (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880654 8var:C (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880655 8var:C (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880656 8var:C (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880657 8var:C (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880658 8var:D (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880659 8var:D (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880660 8var:D (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880661 8var:D (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880662 8var:D (3.9) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    880663 8var:E (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    880664 8var:E (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    880665 8var:G (3.9) BS01 dna ? GO:0003677 ... P0A988 38490435
    880666 8vas:A (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    880667 8vas:B (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880668 8vas:B (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880669 8vas:B (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880670 8vas:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880671 8vas:C (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880672 8vas:C (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880673 8vas:C (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880674 8vas:C (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880675 8vas:D (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880676 8vas:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880677 8vas:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880678 8vas:E (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    880679 8vas:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    880680 8vat:A (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    880681 8vat:B (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880682 8vat:B (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880683 8vat:B (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880684 8vat:B (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880685 8vat:C (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880686 8vat:C (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880687 8vat:C (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880688 8vat:C (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880689 8vat:D (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880690 8vat:D (3.2) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880691 8vat:D (3.2) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    880692 8vat:D (3.2) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    880693 8vat:E (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    880694 8vat:E (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    880695 8vb1:A (1.3) BS01 A1AAD ? GO:0004190 ... G0X8E8 38380945
    880696 8vb1:B (1.3) BS01 A1AAD ? GO:0004190 ... G0X8E8 38380945
    880697 8vba:A (3.29) BS01 BGC N/A N/A Q29XT7 N/A
    880698 8vba:A (3.29) BS02 BGC N/A N/A Q29XT7 N/A
    880699 8vba:A (3.29) BS03 BGC N/A N/A Q29XT7 N/A
    880700 8vba:A (3.29) BS04 BGC N/A N/A Q29XT7 N/A
    880701 8vba:A (3.29) BS05 BGC N/A N/A Q29XT7 N/A
    880702 8vba:A (3.29) BS06 BGC N/A N/A Q29XT7 N/A
    880703 8vba:A (3.29) BS07 BGC N/A N/A Q29XT7 N/A
    880704 8vba:A (3.29) BS08 BGC N/A N/A Q29XT7 N/A
    880705 8vba:A (3.29) BS09 BGC N/A N/A Q29XT7 N/A
    880706 8vba:A (3.29) BS10 BGC N/A N/A Q29XT7 N/A
    880707 8vba:A (3.29) BS11 BGC N/A N/A Q29XT7 N/A
    880708 8vba:A (3.29) BS12 BGC N/A N/A Q29XT7 N/A
    880709 8vba:A (3.29) BS13 BGC N/A N/A Q29XT7 N/A
    880710 8vba:A (3.29) BS14 BGC N/A N/A Q29XT7 N/A
    880711 8vba:A (3.29) BS15 BGC N/A N/A Q29XT7 N/A
    880712 8vba:A (3.29) BS16 BGC N/A N/A Q29XT7 N/A
    880713 8vba:A (3.29) BS17 BGC N/A N/A Q29XT7 N/A
    880714 8vba:A (3.29) BS18 BGC N/A N/A Q29XT7 N/A
    880715 8vba:A (3.29) BS19 BGC N/A N/A Q29XT7 N/A
    880716 8vba:A (3.29) BS20 BGC N/A N/A Q29XT7 N/A
    880717 8vba:A (3.29) BS21 BGC N/A N/A Q29XT7 N/A
    880718 8vba:A (3.29) BS22 BGC N/A N/A Q29XT7 N/A
    880719 8vba:A (3.29) BS23 BGC N/A N/A Q29XT7 N/A
    880720 8vba:A (3.29) BS24 BGC N/A N/A Q29XT7 N/A
    880721 8vba:A (3.29) BS25 BGC N/A N/A Q29XT7 N/A
    880722 8vba:A (3.29) BS26 BGC N/A N/A Q29XT7 N/A
    880723 8vba:A (3.29) BS27 BGC N/A N/A Q29XT7 N/A
    880724 8vba:H (3.29) BS01 BGC N/A N/A N/A N/A
    880725 8vbb:A (3.97) BS01 BGC N/A N/A Q29XT7 N/A
    880726 8vbb:A (3.97) BS02 BGC N/A N/A Q29XT7 N/A
    880727 8vbb:A (3.97) BS03 BGC N/A N/A Q29XT7 N/A
    880728 8vbb:A (3.97) BS04 BGC N/A N/A Q29XT7 N/A
    880729 8vbb:A (3.97) BS05 BGC N/A N/A Q29XT7 N/A
    880730 8vbb:A (3.97) BS06 BGC N/A N/A Q29XT7 N/A
    880731 8vbb:A (3.97) BS07 BGC N/A N/A Q29XT7 N/A
    880732 8vbb:A (3.97) BS08 BGC N/A N/A Q29XT7 N/A
    880733 8vbb:A (3.97) BS09 BGC N/A N/A Q29XT7 N/A
    880734 8vbb:A (3.97) BS10 BGC N/A N/A Q29XT7 N/A
    880735 8vbb:A (3.97) BS11 BGC N/A N/A Q29XT7 N/A
    880736 8vbb:A (3.97) BS12 BGC N/A N/A Q29XT7 N/A
    880737 8vbb:A (3.97) BS13 BGC N/A N/A Q29XT7 N/A
    880738 8vbb:A (3.97) BS14 BGC N/A N/A Q29XT7 N/A
    880739 8vbb:A (3.97) BS15 BGC N/A N/A Q29XT7 N/A
    880740 8vbb:A (3.97) BS16 BGC N/A N/A Q29XT7 N/A
    880741 8vbb:A (3.97) BS17 BGC N/A N/A Q29XT7 N/A
    880742 8vbb:A (3.97) BS18 BGC N/A N/A Q29XT7 N/A
    880743 8vbb:A (3.97) BS19 BGC N/A N/A Q29XT7 N/A
    880744 8vbb:A (3.97) BS20 BGC N/A N/A Q29XT7 N/A
    880745 8vbb:A (3.97) BS21 BGC N/A N/A Q29XT7 N/A
    880746 8vbb:A (3.97) BS22 BGC N/A N/A Q29XT7 N/A
    880747 8vbb:A (3.97) BS23 BGC N/A N/A Q29XT7 N/A
    880748 8vbb:A (3.97) BS24 BGC N/A N/A Q29XT7 N/A
    880749 8vbb:A (3.97) BS25 BGC N/A N/A Q29XT7 N/A
    880750 8vbb:A (3.97) BS26 BGC N/A N/A Q29XT7 N/A
    880751 8vbb:A (3.97) BS27 BGC N/A N/A Q29XT7 N/A
    880752 8vbb:A (3.97) BS28 BGC N/A N/A Q29XT7 N/A
    880753 8vbb:A (3.97) BS29 BGC N/A N/A Q29XT7 N/A
    880754 8vbb:A (3.97) BS30 BGC N/A N/A Q29XT7 N/A
    880755 8vbb:A (3.97) BS31 BGC N/A N/A Q29XT7 N/A
    880756 8vbb:A (3.97) BS32 BGC N/A N/A Q29XT7 N/A
    880757 8vbb:H (3.97) BS01 BGC N/A N/A N/A N/A
    880758 8vbu:A (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    880759 8vbu:B (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    880760 8vbv:A (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    880761 8vbv:B (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    880762 8vbw:A (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    880763 8vbw:B (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    880764 8vby:A (3.19) BS01 42L N/A N/A Q01959 39112705
    880765 8vby:A (3.19) BS02 A1AAF N/A N/A Q01959 39112705
    880766 8vby:A (3.19) BS03 Y01 N/A N/A Q01959 39112705
    880767 8vby:A (3.19) BS04 Y01 N/A N/A Q01959 39112705
    880768 8vby:A (3.19) BS05 ZN N/A N/A Q01959 39112705
    880769 8vby:A (3.19) BS06 Y01 N/A N/A Q01959 39112705
    880770 8vc1:A (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    880771 8vc1:B (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    880772 8vc1:C (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    880773 8vc1:D (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    880774 8vc5:A (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 N/A
    880775 8vc5:B (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 N/A
    880776 8vc8:A (1.8) BS01 HEM N/A N/A N/A 38452047
    880777 8vcd:A (2.32) BS01 VTY N/A N/A Q9FG13 39090154
    880778 8vcj:A (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    880779 8vcj:B (3.32) BS01 dna N/A GO:0003677 ... P05846 38834067
    880780 8vcj:B (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    880781 8vcj:B (3.32) BS03 AGS N/A GO:0003677 ... P05846 38834067
    880782 8vcj:C (3.32) BS01 dna N/A GO:0003677 ... P05846 38834067
    880783 8vcj:C (3.32) BS02 AGS N/A GO:0003677 ... P05846 38834067
    880784 8vcj:D (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    880785 8vcj:D (3.32) BS02 MG N/A GO:0003677 ... P05846 38834067
    880786 8vcj:E (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    880787 8vcj:F (3.32) BS01 dna N/A GO:0003677 ... P05846 38834067
    880788 8vcj:F (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    880789 8vcj:G (3.32) BS01 AGS N/A GO:0003677 ... P05846 38834067
    880790 8vcj:X (3.32) BS01 dna N/A N/A P13991 38834067
    880791 8vcj:X (3.32) BS02 ZN N/A N/A P13991 38834067
    880792 8vcj:Y (3.32) BS01 ZN N/A N/A P13991 38834067
    880793 8vcn:A (1.47) BS01 FMN ? GO:0000166 ... A1E8I9 38442365
    880794 8vct:A (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    880795 8vct:B (3.83) BS01 dna N/A GO:0003677 ... P05846 38834067
    880796 8vct:B (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    880797 8vct:B (3.83) BS03 ADP N/A GO:0003677 ... P05846 38834067
    880798 8vct:C (3.83) BS01 dna N/A GO:0003677 ... P05846 38834067
    880799 8vct:C (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    880800 8vct:E (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218