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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    880401 8v9j:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    880402 8v9j:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    880403 8v9j:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    880404 8v9j:V (3.1) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    880405 8v9j:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    880406 8v9j:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    880407 8v9j:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    880408 8v9j:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    880409 8v9j:Z (3.1) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    880410 8v9j:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    880411 8v9j:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    880412 8v9j:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    880413 8v9j:f (3.1) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    880414 8v9j:g (3.1) BS01 rna ? GO:0000028 ... A0QS97 38355796
    880415 8v9j:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    880416 8v9j:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    880417 8v9j:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    880418 8v9j:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    880419 8v9j:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    880420 8v9j:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    880421 8v9j:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    880422 8v9j:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    880423 8v9j:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    880424 8v9j:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    880425 8v9j:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    880426 8v9j:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    880427 8v9j:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    880428 8v9j:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    880429 8v9j:u (3.1) BS01 rna N/A N/A N/A 38355796
    880430 8v9j:z (3.1) BS01 rna ? N/A A0QRI6 38355796
    880431 8v9j:z (3.1) BS02 rna ? N/A A0QRI6 38355796
    880432 8v9k:1 (3.1) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    880433 8v9k:2 (3.1) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    880434 8v9k:2 (3.1) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    880435 8v9k:3 (3.1) BS01 rna ? GO:0003735 ... A0R215 38355796
    880436 8v9k:4 (3.1) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    880437 8v9k:5 (3.1) BS01 rna ? GO:0003735 ... A0QS39 38355796
    880438 8v9k:5 (3.1) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    880439 8v9k:6 (3.1) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    880440 8v9k:7 (3.1) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    880441 8v9k:8 (3.1) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    880442 8v9k:C (3.1) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    880443 8v9k:D (3.1) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    880444 8v9k:E (3.1) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    880445 8v9k:F (3.1) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    880446 8v9k:F (3.1) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    880447 8v9k:G (3.1) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    880448 8v9k:H (3.1) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    880449 8v9k:I (3.1) BS01 rna ? GO:0003735 ... A0QS62 38355796
    880450 8v9k:J (3.1) BS01 rna ? GO:0003735 ... A0QS45 38355796
    880451 8v9k:K (3.1) BS01 rna ? GO:0000049 ... A0QS46 38355796
    880452 8v9k:L (3.1) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    880453 8v9k:M (3.1) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    880454 8v9k:M (3.1) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    880455 8v9k:N (3.1) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    880456 8v9k:O (3.1) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    880457 8v9k:P (3.1) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    880458 8v9k:Q (3.1) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    880459 8v9k:Q (3.1) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    880460 8v9k:R (3.1) BS01 rna ? GO:0003735 ... A0QV42 38355796
    880461 8v9k:R (3.1) BS02 rna ? GO:0003735 ... A0QV42 38355796
    880462 8v9k:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    880463 8v9k:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    880464 8v9k:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    880465 8v9k:V (3.1) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    880466 8v9k:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    880467 8v9k:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    880468 8v9k:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    880469 8v9k:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    880470 8v9k:Z (3.1) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    880471 8v9k:Z (3.1) BS02 ZN ? GO:0003735 ... I7FJ52 38355796
    880472 8v9k:b (3.1) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    880473 8v9k:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    880474 8v9k:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    880475 8v9k:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    880476 8v9k:f (3.1) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    880477 8v9k:f (3.1) BS02 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    880478 8v9k:g (3.1) BS01 rna ? GO:0000028 ... A0QS97 38355796
    880479 8v9k:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    880480 8v9k:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    880481 8v9k:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    880482 8v9k:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    880483 8v9k:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    880484 8v9k:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    880485 8v9k:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    880486 8v9k:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    880487 8v9k:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    880488 8v9k:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    880489 8v9k:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    880490 8v9k:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    880491 8v9k:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    880492 8v9k:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    880493 8v9k:u (3.1) BS01 rna N/A N/A N/A 38355796
    880494 8v9k:z (3.1) BS01 rna ? GO:0001666 ... P9WL63 38355796
    880495 8v9k:z (3.1) BS02 rna ? GO:0001666 ... P9WL63 38355796
    880496 8v9l:1 (3.0) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    880497 8v9l:2 (3.0) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    880498 8v9l:2 (3.0) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    880499 8v9l:3 (3.0) BS01 rna ? GO:0003735 ... A0R215 38355796
    880500 8v9l:4 (3.0) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    880501 8v9l:5 (3.0) BS01 rna ? GO:0003735 ... A0QS39 38355796
    880502 8v9l:5 (3.0) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    880503 8v9l:6 (3.0) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    880504 8v9l:7 (3.0) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    880505 8v9l:8 (3.0) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    880506 8v9l:C (3.0) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    880507 8v9l:D (3.0) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    880508 8v9l:E (3.0) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    880509 8v9l:F (3.0) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    880510 8v9l:F (3.0) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    880511 8v9l:G (3.0) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    880512 8v9l:H (3.0) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    880513 8v9l:I (3.0) BS01 rna ? GO:0003735 ... A0QS62 38355796
    880514 8v9l:J (3.0) BS01 rna ? GO:0003735 ... A0QS45 38355796
    880515 8v9l:L (3.0) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    880516 8v9l:M (3.0) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    880517 8v9l:M (3.0) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    880518 8v9l:N (3.0) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    880519 8v9l:O (3.0) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    880520 8v9l:P (3.0) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    880521 8v9l:Q (3.0) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    880522 8v9l:Q (3.0) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    880523 8v9l:R (3.0) BS01 rna ? GO:0003735 ... A0QV42 38355796
    880524 8v9l:R (3.0) BS02 rna ? GO:0003735 ... A0QV42 38355796
    880525 8v9l:S (3.0) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    880526 8v9l:T (3.0) BS01 rna ? GO:0003723 ... A0R151 38355796
    880527 8v9l:U (3.0) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    880528 8v9l:V (3.0) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    880529 8v9l:W (3.0) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    880530 8v9l:X (3.0) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    880531 8v9l:X (3.0) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    880532 8v9l:Y (3.0) BS01 rna ? GO:0003735 ... A0R150 38355796
    880533 8v9l:Z (3.0) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    880534 8v9l:b (3.0) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    880535 8v9l:c (3.0) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    880536 8v9l:d (3.0) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    880537 8v9l:e (3.0) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    880538 8v9l:f (3.0) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    880539 8v9l:g (3.0) BS01 rna ? GO:0000028 ... A0QS97 38355796
    880540 8v9l:h (3.0) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    880541 8v9l:i (3.0) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    880542 8v9l:j (3.0) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    880543 8v9l:k (3.0) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    880544 8v9l:l (3.0) BS01 rna ? GO:0000049 ... A0QS96 38355796
    880545 8v9l:m (3.0) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    880546 8v9l:n (3.0) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    880547 8v9l:o (3.0) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    880548 8v9l:o (3.0) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    880549 8v9l:p (3.0) BS01 rna ? GO:0003735 ... A0QV37 38355796
    880550 8v9l:q (3.0) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    880551 8v9l:r (3.0) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    880552 8v9l:s (3.0) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    880553 8v9l:t (3.0) BS01 rna ? GO:0003723 ... A0R102 38355796
    880554 8v9l:u (3.0) BS01 rna N/A N/A N/A 38355796
    880555 8v9l:u (3.0) BS02 rna N/A N/A N/A 38355796
    880556 8v9l:x (3.0) BS01 rna ? GO:0003746 ... A0QS98 38355796
    880557 8v9l:x (3.0) BS02 GDP ? GO:0003746 ... A0QS98 38355796
    880558 8v9l:z (3.0) BS01 rna ? N/A A0QRI6 38355796
    880559 8v9l:z (3.0) BS02 rna ? N/A A0QRI6 38355796
    880560 8v9m:A (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    880561 8v9m:B (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    880562 8v9m:C (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    880563 8v9p:A (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    880564 8v9p:B (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    880565 8v9p:C (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    880566 8v9p:D (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    880567 8v9q:A (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    880568 8v9q:A (2.29) BS02 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    880569 8v9q:A (2.29) BS03 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    880570 8v9q:A (2.29) BS04 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    880571 8v9q:B (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    880572 8v9q:B (2.29) BS02 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    880573 8v9q:B (2.29) BS03 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    880574 8v9w:A (1.68) BS01 7V7 N/A N/A N/A 38945452
    880575 8v9w:B (1.68) BS01 7V7 N/A N/A N/A 38945452
    880576 8v9w:C (1.68) BS01 7V7 N/A N/A N/A 38945452
    880577 8v9w:D (1.68) BS01 7V7 N/A N/A N/A 38945452
    880578 8v9x:A (1.55) BS01 7V7 N/A N/A N/A 38945452
    880579 8v9z:A (1.6) BS01 7V7 N/A N/A N/A 38945452
    880580 8va0:A (1.85) BS01 7V7 N/A N/A N/A 38945452
    880581 8va0:B (1.85) BS01 7V7 N/A N/A N/A 38945452
    880582 8va1:A (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    880583 8va1:B (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    880584 8va1:C (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    880585 8va1:D (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    880586 8va2:a (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    880587 8va2:a (4.5) BS02 MG 3.6.5.- GO:0000226 ... P68363 N/A
    880588 8va2:b (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    880589 8va2:g (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    880590 8va2:h (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    880591 8vac:A (3.4) BS01 9TP N/A GO:0003677 ... P02768 38852682
    880592 8vae:A (3.7) BS01 SAL N/A GO:0003677 ... P02768 38852682
    880593 8vae:A (3.7) BS02 SAL N/A GO:0003677 ... P02768 38852682
    880594 8vae:A (3.7) BS03 SAL N/A GO:0003677 ... P02768 38852682
    880595 8val:A (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    880596 8val:B (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880597 8val:B (3.7) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    880598 8val:C (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    880599 8val:C (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    880600 8val:C (3.7) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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