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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    879401 8v05:A (2.08) BS02 CYS 3.1.16.1 GO:0003824 ... O35405 38537643
    879402 8v06:B (2.73) BS01 BMA 3.1.16.1 GO:0003824 ... O35405 38537643
    879403 8v06:B (2.73) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    879404 8v07:B (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    879405 8v07:B (1.99) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    879406 8v07:C (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    879407 8v08:A (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    879408 8v08:B (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    879409 8v09:A (1.61) BS01 PGH N/A N/A N/A 39145435
    879410 8v0a:B (2.05) BS01 PGH N/A N/A N/A 39145435
    879411 8v0b:A (1.65) BS01 YCI N/A N/A Q9NUW8 N/A
    879412 8v0b:B (1.65) BS01 YCI N/A N/A Q9NUW8 N/A
    879413 8v0c:A (1.62) BS01 YE3 N/A N/A Q9NUW8 N/A
    879414 8v0c:B (1.62) BS01 YE3 N/A N/A Q9NUW8 N/A
    879415 8v0i:A (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879416 8v0i:B (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879417 8v0i:C (5.8) BS01 CA ? GO:0003009 ... P63317 38387550
    879418 8v0i:C (5.8) BS02 CA ? GO:0003009 ... P63317 38387550
    879419 8v0i:C (5.8) BS03 CA ? GO:0003009 ... P63317 38387550
    879420 8v0k:A (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879421 8v0k:B (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879422 8v0k:C (5.2) BS01 CA ? GO:0003009 ... P63317 38387550
    879423 8v0k:C (5.2) BS02 CA ? GO:0003009 ... P63317 38387550
    879424 8v0k:C (5.2) BS03 CA ? GO:0003009 ... P63317 38387550
    879425 8v0y:A (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879426 8v0y:B (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    879427 8v14:A (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    879428 8v14:B (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    879429 8v15:A (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879430 8v15:A (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879431 8v15:A (2.4) BS03 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879432 8v15:C (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879433 8v15:C (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879434 8v15:C (2.4) BS03 Y4T 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879435 8v15:C (2.4) BS04 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879436 8v1f:B (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    879437 8v1f:C (2.19) BS01 FUC 3.4.21.122 GO:0016020 ... O15393 N/A
    879438 8v1f:D (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    879439 8v1j:A (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    879440 8v1j:A (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    879441 8v1j:A (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    879442 8v1j:A (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    879443 8v1j:B (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    879444 8v1j:B (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    879445 8v1j:B (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    879446 8v1j:B (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    879447 8v1l:A (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    879448 8v1l:B (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    879449 8v1l:C (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    879450 8v1l:D (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    879451 8v1l:E (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    879452 8v1l:F (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    879453 8v1o:A (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    879454 8v1o:B (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    879455 8v1o:C (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    879456 8v1o:D (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    879457 8v1p:A (2.21) BS01 98C ? N/A Q8IVV7 N/A
    879458 8v1q:A (2.7) BS01 dna N/A N/A H9E937 39197451
    879459 8v1q:A (2.7) BS02 dna N/A N/A H9E937 39197451
    879460 8v1q:A (2.7) BS03 MG N/A N/A H9E937 39197451
    879461 8v1q:B (2.7) BS01 dna N/A N/A A0A181ZFK4 39197451
    879462 8v1r:A (2.9) BS01 dna N/A N/A H9E937 39197451
    879463 8v1r:A (2.9) BS02 dna N/A N/A H9E937 39197451
    879464 8v1r:A (2.9) BS03 MG N/A N/A H9E937 39197451
    879465 8v1r:A (2.9) BS04 MG N/A N/A H9E937 39197451
    879466 8v1r:A (2.9) BS05 MG N/A N/A H9E937 39197451
    879467 8v1r:A (2.9) BS06 MG N/A N/A H9E937 39197451
    879468 8v1r:A (2.9) BS07 TTP N/A N/A H9E937 39197451
    879469 8v1r:B (2.9) BS01 dna N/A N/A H9E949 39197451
    879470 8v1s:A (3.26) BS01 dna N/A N/A H9E937 39197451
    879471 8v1s:A (3.26) BS02 dna N/A N/A H9E937 39197451
    879472 8v1s:A (3.26) BS03 MG N/A N/A H9E937 39197451
    879473 8v1s:B (3.26) BS01 dna N/A N/A H9E949 39197451
    879474 8v1t:A (2.8) BS01 dna N/A N/A H9E937 39197451
    879475 8v1t:A (2.8) BS02 dna N/A N/A H9E937 39197451
    879476 8v1t:A (2.8) BS03 MG N/A N/A H9E937 39197451
    879477 8v1t:A (2.8) BS04 MG N/A N/A H9E937 39197451
    879478 8v1t:A (2.8) BS05 MG N/A N/A H9E937 39197451
    879479 8v1t:A (2.8) BS06 MG N/A N/A H9E937 39197451
    879480 8v1t:A (2.8) BS07 AVP N/A N/A H9E937 39197451
    879481 8v1t:B (2.8) BS01 dna N/A N/A H9E949 39197451
    879482 8v1t:B (2.8) BS02 dna N/A N/A H9E949 39197451
    879483 8v24:A (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    879484 8v24:B (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    879485 8v24:B (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    879486 8v24:C (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    879487 8v24:D (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    879488 8v24:D (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    879489 8v25:A (3.32) BS01 dna N/A N/A P84233 39149911
    879490 8v25:A (3.32) BS02 dna N/A N/A P84233 39149911
    879491 8v25:B (3.32) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879492 8v25:C (3.32) BS01 dna N/A N/A Q6AZJ8 39149911
    879493 8v25:C (3.32) BS02 dna N/A N/A Q6AZJ8 39149911
    879494 8v25:D (3.32) BS01 dna N/A N/A P02281 39149911
    879495 8v25:D (3.32) BS02 dna N/A N/A P02281 39149911
    879496 8v25:E (3.32) BS01 dna N/A N/A P84233 39149911
    879497 8v25:E (3.32) BS02 dna N/A N/A P84233 39149911
    879498 8v25:F (3.32) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879499 8v25:G (3.32) BS01 dna N/A N/A Q6AZJ8 39149911
    879500 8v25:G (3.32) BS02 dna N/A N/A Q6AZJ8 39149911
    879501 8v25:H (3.32) BS01 dna N/A N/A P02281 39149911
    879502 8v25:H (3.32) BS02 dna N/A N/A P02281 39149911
    879503 8v26:A (3.33) BS01 dna N/A N/A P84233 39149911
    879504 8v26:A (3.33) BS02 dna N/A N/A P84233 39149911
    879505 8v26:B (3.33) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879506 8v26:C (3.33) BS01 dna N/A N/A Q6AZJ8 39149911
    879507 8v26:C (3.33) BS02 dna N/A N/A Q6AZJ8 39149911
    879508 8v26:D (3.33) BS01 dna N/A N/A P02281 39149911
    879509 8v26:E (3.33) BS01 dna N/A N/A P84233 39149911
    879510 8v26:E (3.33) BS02 dna N/A N/A P84233 39149911
    879511 8v26:F (3.33) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879512 8v26:G (3.33) BS01 dna N/A N/A Q6AZJ8 39149911
    879513 8v26:H (3.33) BS01 dna N/A N/A P02281 39149911
    879514 8v26:H (3.33) BS02 dna N/A N/A P02281 39149911
    879515 8v27:A (3.34) BS01 dna N/A N/A P84233 39149911
    879516 8v27:A (3.34) BS02 dna N/A N/A P84233 39149911
    879517 8v27:B (3.34) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879518 8v27:C (3.34) BS01 dna N/A N/A Q6AZJ8 39149911
    879519 8v27:C (3.34) BS02 dna N/A N/A Q6AZJ8 39149911
    879520 8v27:D (3.34) BS01 dna N/A N/A P02281 39149911
    879521 8v27:D (3.34) BS02 dna N/A N/A P02281 39149911
    879522 8v27:E (3.34) BS01 dna N/A N/A P84233 39149911
    879523 8v27:E (3.34) BS02 dna N/A N/A P84233 39149911
    879524 8v27:F (3.34) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879525 8v27:F (3.34) BS02 dna N/A N/A A0A8J1LTD2 39149911
    879526 8v27:G (3.34) BS01 dna N/A N/A Q6AZJ8 39149911
    879527 8v27:G (3.34) BS02 dna N/A N/A Q6AZJ8 39149911
    879528 8v27:H (3.34) BS01 dna N/A N/A P02281 39149911
    879529 8v28:A (3.36) BS01 dna N/A N/A P84233 39149911
    879530 8v28:A (3.36) BS02 dna N/A N/A P84233 39149911
    879531 8v28:B (3.36) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879532 8v28:C (3.36) BS01 dna N/A N/A Q6AZJ8 39149911
    879533 8v28:C (3.36) BS02 dna N/A N/A Q6AZJ8 39149911
    879534 8v28:D (3.36) BS01 dna N/A N/A P02281 39149911
    879535 8v28:E (3.36) BS01 dna N/A N/A P84233 39149911
    879536 8v28:E (3.36) BS02 dna N/A N/A P84233 39149911
    879537 8v28:F (3.36) BS01 dna N/A N/A A0A8J1LTD2 39149911
    879538 8v28:F (3.36) BS02 dna N/A N/A A0A8J1LTD2 39149911
    879539 8v28:G (3.36) BS01 dna N/A N/A Q6AZJ8 39149911
    879540 8v28:G (3.36) BS02 dna N/A N/A Q6AZJ8 39149911
    879541 8v2f:A (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    879542 8v2f:B (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    879543 8v2f:C (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    879544 8v2f:D (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    879545 8v2i:A () BS01 GTP N/A N/A N/A N/A
    879546 8v2i:B () BS01 G2P N/A N/A N/A N/A
    879547 8v2i:I () BS01 GTP N/A N/A N/A N/A
    879548 8v2i:Q () BS01 G2P N/A N/A N/A N/A
    879549 8v2k:A (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    879550 8v2k:B (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    879551 8v2k:C (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    879552 8v2k:D (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    879553 8v2l:A (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    879554 8v2l:B (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    879555 8v2l:C (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    879556 8v2l:D (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    879557 8v2n:A (1.74) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879558 8v2n:A (1.74) BS02 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879559 8v2n:A (1.74) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    879560 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879561 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879562 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879563 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879564 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879565 8v2t:A (1.402) BS01 XLR 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    879566 8v2t:A (1.402) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    879567 8v2y:A (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    879568 8v2y:B (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    879569 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    879570 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    879571 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    879572 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    879573 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    879574 8v30:A (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879575 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879576 8v30:B (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879577 8v30:B (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879578 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879579 8v30:C (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879580 8v30:C (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879581 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879582 8v30:D (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879583 8v30:D (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879584 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879585 8v30:E (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879586 8v30:E (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    879587 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    879588 8v31:A (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    879589 8v31:C (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    879590 8v35:A (1.94) BS01 ZN N/A N/A Q46N53 39263660
    879591 8v35:B (1.94) BS01 ZN N/A N/A Q46N53 39263660
    879592 8v36:A (2.235) BS01 ZN N/A N/A Q46N53 39263660
    879593 8v36:A (2.235) BS02 NAI N/A N/A Q46N53 39263660
    879594 8v36:B (2.235) BS01 NAI N/A N/A Q46N53 39263660
    879595 8v36:B (2.235) BS02 ZN N/A N/A Q46N53 39263660
    879596 8v37:A (2.228) BS01 NAD N/A N/A Q46N53 39263660
    879597 8v37:A (2.228) BS02 ZN N/A N/A Q46N53 39263660
    879598 8v37:B (2.228) BS01 ZN N/A N/A Q46N53 39263660
    879599 8v3d:D (2.95) BS01 A1AFC N/A GO:0004984 ... A0A1S4GFY3 38870275
    879600 8v3k:A (1.47) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 38420671
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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