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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    879001 8ux1:D (2.5) BS01 dna ? GO:0000786 ... P02283 N/A
    879002 8ux1:D (2.5) BS02 dna ? GO:0000786 ... P02283 N/A
    879003 8ux1:E (2.5) BS01 dna ? GO:0000785 ... P02299 N/A
    879004 8ux1:E (2.5) BS02 dna ? GO:0000785 ... P02299 N/A
    879005 8ux1:F (2.5) BS01 dna ? GO:0000228 ... P84040 N/A
    879006 8ux1:F (2.5) BS02 dna ? GO:0000228 ... P84040 N/A
    879007 8ux1:G (2.5) BS01 dna ? GO:0000786 ... P84051 N/A
    879008 8ux1:G (2.5) BS02 dna ? GO:0000786 ... P84051 N/A
    879009 8ux1:H (2.5) BS01 dna ? GO:0000786 ... P02283 N/A
    879010 8ux1:H (2.5) BS02 dna ? GO:0000786 ... P02283 N/A
    879011 8ux2:A (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    879012 8ux2:A (1.87) BS02 CA 2.4.2.- N/A Q7NY09 38159861
    879013 8ux2:B (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    879014 8ux2:B (1.87) BS02 CA 2.4.2.- N/A Q7NY09 38159861
    879015 8ux2:C (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    879016 8ux2:C (1.87) BS02 CA 2.4.2.- N/A Q7NY09 38159861
    879017 8ux5:A (3.06) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    879018 8ux5:B (3.06) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    879019 8ux7:A (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    879020 8ux7:A (2.2) BS02 CA ? GO:0005509 ... B3EWJ2 N/A
    879021 8ux7:A (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    879022 8ux7:B (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    879023 8ux7:B (2.2) BS02 CA ? GO:0005509 ... B3EWJ2 N/A
    879024 8ux7:B (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    879025 8ux9:B (3.2) BS01 AGS N/A N/A N/A N/A
    879026 8ux9:B (3.2) BS02 AGS N/A N/A N/A N/A
    879027 8ux9:C (3.2) BS01 AGS N/A N/A N/A N/A
    879028 8uxc:A (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879029 8uxc:A (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879030 8uxc:A (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879031 8uxc:B (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879032 8uxc:B (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879033 8uxc:B (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879034 8uxc:C (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879035 8uxc:C (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879036 8uxc:C (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879037 8uxc:D (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879038 8uxc:D (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879039 8uxc:D (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879040 8uxe:A (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879041 8uxe:A (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879042 8uxe:A (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879043 8uxe:A (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879044 8uxe:B (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879045 8uxe:B (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879046 8uxe:B (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879047 8uxe:B (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879048 8uxe:C (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879049 8uxe:C (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879050 8uxe:C (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879051 8uxe:C (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879052 8uxe:D (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879053 8uxe:D (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879054 8uxe:D (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879055 8uxe:D (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879056 8uxf:A (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879057 8uxf:A (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879058 8uxf:A (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    879059 8uxf:B (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879060 8uxf:B (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879061 8uxf:B (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    879062 8uxf:C (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879063 8uxf:C (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879064 8uxf:C (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    879065 8uxf:D (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879066 8uxf:D (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879067 8uxf:D (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    879068 8uxg:A (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879069 8uxg:A (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879070 8uxg:A (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879071 8uxg:A (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879072 8uxg:B (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879073 8uxg:B (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879074 8uxg:B (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879075 8uxg:B (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879076 8uxg:C (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879077 8uxg:C (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879078 8uxg:C (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879079 8uxg:C (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879080 8uxg:D (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879081 8uxg:D (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879082 8uxg:D (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    879083 8uxg:D (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    879084 8uxh:A (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879085 8uxh:A (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879086 8uxh:A (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    879087 8uxh:A (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    879088 8uxh:B (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879089 8uxh:B (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879090 8uxh:B (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    879091 8uxh:B (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    879092 8uxh:C (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879093 8uxh:C (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879094 8uxh:C (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    879095 8uxh:C (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    879096 8uxh:D (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    879097 8uxh:D (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    879098 8uxh:D (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    879099 8uxh:D (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    879100 8uxi:A (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879101 8uxi:A (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879102 8uxi:A (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    879103 8uxi:A (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879104 8uxi:B (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879105 8uxi:B (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879106 8uxi:B (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    879107 8uxi:B (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879108 8uxi:C (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879109 8uxi:C (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879110 8uxi:C (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    879111 8uxi:C (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879112 8uxi:D (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879113 8uxi:D (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879114 8uxi:D (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    879115 8uxi:D (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879116 8uxl:A (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879117 8uxl:A (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879118 8uxl:A (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    879119 8uxl:A (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879120 8uxl:B (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879121 8uxl:B (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879122 8uxl:B (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    879123 8uxl:B (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879124 8uxl:C (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879125 8uxl:C (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879126 8uxl:C (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    879127 8uxl:C (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879128 8uxl:D (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879129 8uxl:D (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879130 8uxl:D (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    879131 8uxl:D (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    879132 8uxl:I (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879133 8uxl:I (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879134 8uxl:I (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879135 8uxl:I (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879136 8uxl:J (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879137 8uxl:J (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879138 8uxl:J (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879139 8uxl:J (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879140 8uxl:K (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879141 8uxl:K (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879142 8uxl:K (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879143 8uxl:K (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879144 8uxl:L (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879145 8uxl:L (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879146 8uxl:L (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879147 8uxl:L (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879148 8uxm:A (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879149 8uxm:A (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879150 8uxm:A (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    879151 8uxm:B (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879152 8uxm:B (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879153 8uxm:B (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    879154 8uxm:C (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879155 8uxm:C (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879156 8uxm:C (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    879157 8uxm:D (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    879158 8uxm:D (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    879159 8uxm:D (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    879160 8uxm:I (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879161 8uxm:I (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879162 8uxm:I (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879163 8uxm:I (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879164 8uxm:J (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879165 8uxm:J (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879166 8uxm:J (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879167 8uxm:J (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879168 8uxm:K (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879169 8uxm:K (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879170 8uxm:K (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879171 8uxm:K (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879172 8uxm:L (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    879173 8uxm:L (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    879174 8uxm:L (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    879175 8uxm:L (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    879176 8uxq:A (6.3) BS01 dna N/A N/A P45973 N/A
    879177 8uxq:E (6.3) BS01 dna N/A N/A P84233 N/A
    879178 8uxq:E (6.3) BS02 dna N/A N/A P84233 N/A
    879179 8uxq:F (6.3) BS01 dna N/A N/A P62799 N/A
    879180 8uxq:F (6.3) BS02 dna N/A N/A P62799 N/A
    879181 8uxq:G (6.3) BS01 dna N/A N/A P0C0S6 N/A
    879182 8uxq:G (6.3) BS02 dna N/A N/A P0C0S6 N/A
    879183 8uxq:H (6.3) BS01 dna N/A N/A P02281 N/A
    879184 8uxq:H (6.3) BS02 dna N/A N/A P02281 N/A
    879185 8uxq:K (6.3) BS01 dna N/A N/A P84233 N/A
    879186 8uxq:K (6.3) BS02 dna N/A N/A P84233 N/A
    879187 8uxq:L (6.3) BS01 dna N/A N/A P62799 N/A
    879188 8uxq:L (6.3) BS02 dna N/A N/A P62799 N/A
    879189 8uxq:M (6.3) BS01 dna N/A N/A P0C0S6 N/A
    879190 8uxq:N (6.3) BS01 dna N/A N/A P02281 N/A
    879191 8uxq:N (6.3) BS02 dna N/A N/A P02281 N/A
    879192 8uxs:A (2.0) BS01 XU8 N/A N/A Q9Y2U9 N/A
    879193 8uxs:B (2.0) BS01 XU8 N/A N/A Q9Y2U9 N/A
    879194 8uxu:A (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879195 8uxu:B (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879196 8uxu:C (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879197 8uxu:D (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879198 8uxu:E (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879199 8uxu:F (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    879200 8uxu:G (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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