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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    878801 8uvs:1e (2.75) BS01 rna N/A N/A Q5SHQ5 38165935
    878802 8uvs:1e (2.75) BS02 Y7K N/A N/A Q5SHQ5 38165935
    878803 8uvs:1e (2.75) BS03 MG N/A N/A Q5SHQ5 38165935
    878804 8uvs:1f (2.75) BS01 rna N/A N/A Q5SLP8 38165935
    878805 8uvs:1g (2.75) BS01 rna N/A N/A P17291 38165935
    878806 8uvs:1g (2.75) BS02 rna N/A N/A P17291 38165935
    878807 8uvs:1h (2.75) BS01 rna N/A N/A P0DOY9 38165935
    878808 8uvs:1i (2.75) BS01 rna N/A N/A P80374 38165935
    878809 8uvs:1i (2.75) BS02 rna N/A N/A P80374 38165935
    878810 8uvs:1j (2.75) BS01 rna N/A N/A Q5SHN7 38165935
    878811 8uvs:1k (2.75) BS01 rna N/A N/A P80376 38165935
    878812 8uvs:1k (2.75) BS02 MG N/A N/A P80376 38165935
    878813 8uvs:1l (2.75) BS01 rna N/A N/A Q5SHN3 38165935
    878814 8uvs:1l (2.75) BS02 MG N/A N/A Q5SHN3 38165935
    878815 8uvs:1m (2.75) BS01 rna N/A N/A P80377 38165935
    878816 8uvs:1m (2.75) BS02 rna N/A N/A P80377 38165935
    878817 8uvs:1m (2.75) BS03 rna N/A N/A P80377 38165935
    878818 8uvs:1m (2.75) BS04 rna N/A N/A P80377 38165935
    878819 8uvs:1m (2.75) BS05 MG N/A N/A P80377 38165935
    878820 8uvs:1n (2.75) BS01 rna N/A N/A P0DOY6 38165935
    878821 8uvs:1n (2.75) BS02 ZN N/A N/A P0DOY6 38165935
    878822 8uvs:1o (2.75) BS01 rna N/A N/A Q5SJ76 38165935
    878823 8uvs:1o (2.75) BS02 rna N/A N/A Q5SJ76 38165935
    878824 8uvs:1p (2.75) BS01 rna N/A N/A Q5SJH3 38165935
    878825 8uvs:1q (2.75) BS01 rna N/A N/A P0DOY7 38165935
    878826 8uvs:1r (2.75) BS01 rna N/A N/A Q5SLQ0 38165935
    878827 8uvs:1s (2.75) BS01 rna N/A N/A Q5SHP2 38165935
    878828 8uvs:1t (2.75) BS01 rna N/A N/A P80380 38165935
    878829 8uvs:1t (2.75) BS02 MG N/A N/A P80380 38165935
    878830 8uvs:20 (2.75) BS01 rna N/A N/A P60493 38165935
    878831 8uvs:20 (2.75) BS02 rna N/A N/A P60493 38165935
    878832 8uvs:21 (2.75) BS01 rna N/A N/A P60494 38165935
    878833 8uvs:21 (2.75) BS02 rna N/A N/A P60494 38165935
    878834 8uvs:21 (2.75) BS03 MG N/A N/A P60494 38165935
    878835 8uvs:22 (2.75) BS01 rna N/A N/A Q5SHP6 38165935
    878836 8uvs:23 (2.75) BS01 rna N/A N/A Q5SHQ6 38165935
    878837 8uvs:23 (2.75) BS02 rna N/A N/A Q5SHQ6 38165935
    878838 8uvs:23 (2.75) BS03 MG N/A N/A Q5SHQ6 38165935
    878839 8uvs:24 (2.75) BS01 rna N/A N/A Q5SJE1 38165935
    878840 8uvs:24 (2.75) BS02 ZN N/A N/A Q5SJE1 38165935
    878841 8uvs:25 (2.75) BS01 rna N/A N/A P80339 38165935
    878842 8uvs:25 (2.75) BS02 MG N/A N/A P80339 38165935
    878843 8uvs:25 (2.75) BS03 MG N/A N/A P80339 38165935
    878844 8uvs:25 (2.75) BS04 MG N/A N/A P80339 38165935
    878845 8uvs:25 (2.75) BS05 ZN N/A N/A P80339 38165935
    878846 8uvs:26 (2.75) BS01 rna N/A N/A P35871 38165935
    878847 8uvs:26 (2.75) BS02 MG N/A N/A P35871 38165935
    878848 8uvs:26 (2.75) BS03 ZN N/A N/A P35871 38165935
    878849 8uvs:27 (2.75) BS01 rna N/A N/A P80340 38165935
    878850 8uvs:27 (2.75) BS02 MG N/A N/A P80340 38165935
    878851 8uvs:28 (2.75) BS01 rna N/A N/A Q5SKU1 38165935
    878852 8uvs:29 (2.75) BS01 rna N/A N/A Q5SHR2 38165935
    878853 8uvs:29 (2.75) BS02 ZN N/A N/A Q5SHR2 38165935
    878854 8uvs:2D (2.75) BS01 rna N/A N/A P60405 38165935
    878855 8uvs:2D (2.75) BS02 rna N/A N/A P60405 38165935
    878856 8uvs:2D (2.75) BS03 MG N/A N/A P60405 38165935
    878857 8uvs:2D (2.75) BS04 MG N/A N/A P60405 38165935
    878858 8uvs:2D (2.75) BS05 MG N/A N/A P60405 38165935
    878859 8uvs:2D (2.75) BS06 MG N/A N/A P60405 38165935
    878860 8uvs:2D (2.75) BS07 MG N/A N/A P60405 38165935
    878861 8uvs:2E (2.75) BS01 rna N/A N/A Q5SHN8 38165935
    878862 8uvs:2E (2.75) BS02 MG N/A N/A Q5SHN8 38165935
    878863 8uvs:2F (2.75) BS01 rna N/A N/A Q5SHN9 38165935
    878864 8uvs:2F (2.75) BS02 MG N/A N/A Q5SHN9 38165935
    878865 8uvs:2F (2.75) BS03 MG N/A N/A Q5SHN9 38165935
    878866 8uvs:2F (2.75) BS04 MG N/A N/A Q5SHN9 38165935
    878867 8uvs:2G (2.75) BS01 rna N/A N/A Q5SHQ0 38165935
    878868 8uvs:2G (2.75) BS02 rna N/A N/A Q5SHQ0 38165935
    878869 8uvs:2G (2.75) BS03 rna N/A N/A Q5SHQ0 38165935
    878870 8uvs:2H (2.75) BS01 rna N/A N/A P0DOY8 38165935
    878871 8uvs:2I (2.75) BS01 rna N/A N/A Q5SLQ1 38165935
    878872 8uvs:2N (2.75) BS01 rna N/A N/A P60488 38165935
    878873 8uvs:2O (2.75) BS01 rna N/A N/A Q5SHP8 38165935
    878874 8uvs:2O (2.75) BS02 rna N/A N/A Q5SHP8 38165935
    878875 8uvs:2P (2.75) BS01 rna N/A N/A Q5SHQ7 38165935
    878876 8uvs:2Q (2.75) BS01 rna N/A N/A P60489 38165935
    878877 8uvs:2Q (2.75) BS02 rna N/A N/A P60489 38165935
    878878 8uvs:2Q (2.75) BS03 rna N/A N/A P60489 38165935
    878879 8uvs:2Q (2.75) BS04 MG N/A N/A P60489 38165935
    878880 8uvs:2Q (2.75) BS05 MG N/A N/A P60489 38165935
    878881 8uvs:2Q (2.75) BS06 MG N/A N/A P60489 38165935
    878882 8uvs:2R (2.75) BS01 rna N/A N/A Q9Z9H5 38165935
    878883 8uvs:2S (2.75) BS01 rna N/A N/A Q5SHQ4 38165935
    878884 8uvs:2S (2.75) BS02 rna N/A N/A Q5SHQ4 38165935
    878885 8uvs:2T (2.75) BS01 rna N/A N/A P60490 38165935
    878886 8uvs:2T (2.75) BS02 rna N/A N/A P60490 38165935
    878887 8uvs:2U (2.75) BS01 rna N/A N/A P60491 38165935
    878888 8uvs:2U (2.75) BS02 MG N/A N/A P60491 38165935
    878889 8uvs:2V (2.75) BS01 rna N/A N/A P60492 38165935
    878890 8uvs:2V (2.75) BS02 MG N/A N/A P60492 38165935
    878891 8uvs:2W (2.75) BS01 rna N/A N/A Q5SHP3 38165935
    878892 8uvs:2W (2.75) BS02 MG N/A N/A Q5SHP3 38165935
    878893 8uvs:2X (2.75) BS01 rna N/A N/A Q5SHP0 38165935
    878894 8uvs:2X (2.75) BS02 MG N/A N/A Q5SHP0 38165935
    878895 8uvs:2Y (2.75) BS01 rna N/A N/A Q5SHP9 38165935
    878896 8uvs:2Y (2.75) BS02 ZN N/A N/A Q5SHP9 38165935
    878897 8uvs:2Z (2.75) BS01 rna N/A N/A Q5SHZ1 38165935
    878898 8uvs:2Z (2.75) BS02 MG N/A N/A Q5SHZ1 38165935
    878899 8uvs:2b (2.75) BS01 rna N/A N/A P80371 38165935
    878900 8uvs:2c (2.75) BS01 rna N/A N/A P80372 38165935
    878901 8uvs:2d (2.75) BS01 rna N/A N/A P80373 38165935
    878902 8uvs:2d (2.75) BS02 MG N/A N/A P80373 38165935
    878903 8uvs:2d (2.75) BS03 SF4 N/A N/A P80373 38165935
    878904 8uvs:2e (2.75) BS01 rna N/A N/A Q5SHQ5 38165935
    878905 8uvs:2e (2.75) BS02 Y7K N/A N/A Q5SHQ5 38165935
    878906 8uvs:2e (2.75) BS03 MG N/A N/A Q5SHQ5 38165935
    878907 8uvs:2f (2.75) BS01 rna N/A N/A Q5SLP8 38165935
    878908 8uvs:2f (2.75) BS02 MG N/A N/A Q5SLP8 38165935
    878909 8uvs:2g (2.75) BS01 rna N/A N/A P17291 38165935
    878910 8uvs:2g (2.75) BS02 rna N/A N/A P17291 38165935
    878911 8uvs:2h (2.75) BS01 rna N/A N/A P0DOY9 38165935
    878912 8uvs:2i (2.75) BS01 rna N/A N/A P80374 38165935
    878913 8uvs:2i (2.75) BS02 rna N/A N/A P80374 38165935
    878914 8uvs:2j (2.75) BS01 rna N/A N/A Q5SHN7 38165935
    878915 8uvs:2k (2.75) BS01 rna N/A N/A P80376 38165935
    878916 8uvs:2k (2.75) BS02 MG N/A N/A P80376 38165935
    878917 8uvs:2l (2.75) BS01 rna N/A N/A Q5SHN3 38165935
    878918 8uvs:2l (2.75) BS02 rna N/A N/A Q5SHN3 38165935
    878919 8uvs:2l (2.75) BS03 MG N/A N/A Q5SHN3 38165935
    878920 8uvs:2l (2.75) BS04 MG N/A N/A Q5SHN3 38165935
    878921 8uvs:2m (2.75) BS01 rna N/A N/A P80377 38165935
    878922 8uvs:2n (2.75) BS01 rna N/A N/A P0DOY6 38165935
    878923 8uvs:2n (2.75) BS02 ZN N/A N/A P0DOY6 38165935
    878924 8uvs:2o (2.75) BS01 rna N/A N/A Q5SJ76 38165935
    878925 8uvs:2o (2.75) BS02 rna N/A N/A Q5SJ76 38165935
    878926 8uvs:2p (2.75) BS01 rna N/A N/A Q5SJH3 38165935
    878927 8uvs:2q (2.75) BS01 rna N/A N/A P0DOY7 38165935
    878928 8uvs:2q (2.75) BS02 MG N/A N/A P0DOY7 38165935
    878929 8uvs:2r (2.75) BS01 rna N/A N/A Q5SLQ0 38165935
    878930 8uvs:2s (2.75) BS01 rna N/A N/A Q5SHP2 38165935
    878931 8uvs:2t (2.75) BS01 rna N/A N/A P80380 38165935
    878932 8uvu:A (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    878933 8uvu:A (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    878934 8uvu:B (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    878935 8uvu:B (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    878936 8uvu:C (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    878937 8uvu:C (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    878938 8uvu:D (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    878939 8uvu:D (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    878940 8uvv:A (2.5) BS01 SIA N/A N/A N/A 39251137
    878941 8uvx:A (2.9) BS01 dna ? GO:0000160 ... A0A3H9R6A1 38323832
    878942 8uvx:A (2.9) BS02 dna ? GO:0000160 ... A0A3H9R6A1 38323832
    878943 8uvx:B (2.9) BS01 dna ? GO:0000160 ... A0A3H9R6A1 38323832
    878944 8uvx:B (2.9) BS02 dna ? GO:0000160 ... A0A3H9R6A1 38323832
    878945 8uvy:A (2.11) BS01 XOO N/A N/A P31749 N/A
    878946 8uvy:A (2.11) BS02 ZN N/A N/A P31749 N/A
    878947 8uvz:A (0.93) BS01 NAP 1.5.1.3 GO:0004146 ... P11045 N/A
    878948 8uw0:A (0.93) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    878949 8uw0:A (0.93) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    878950 8uw1:A (2.88) BS01 dna N/A N/A P84233 39196936
    878951 8uw1:A (2.88) BS02 dna N/A N/A P84233 39196936
    878952 8uw1:B (2.88) BS01 dna N/A N/A A0A8J1LTD2 39196936
    878953 8uw1:B (2.88) BS02 dna N/A N/A A0A8J1LTD2 39196936
    878954 8uw1:C (2.88) BS01 dna N/A N/A Q6AZJ8 39196936
    878955 8uw1:C (2.88) BS02 dna N/A N/A Q6AZJ8 39196936
    878956 8uw1:D (2.88) BS01 dna N/A N/A P02281 39196936
    878957 8uw1:E (2.88) BS01 dna N/A N/A P84233 39196936
    878958 8uw1:E (2.88) BS02 dna N/A N/A P84233 39196936
    878959 8uw1:F (2.88) BS01 dna N/A N/A A0A8J1LTD2 39196936
    878960 8uw1:F (2.88) BS02 dna N/A N/A A0A8J1LTD2 39196936
    878961 8uw1:G (2.88) BS01 dna N/A N/A Q6AZJ8 39196936
    878962 8uw1:G (2.88) BS02 dna N/A N/A Q6AZJ8 39196936
    878963 8uw1:H (2.88) BS01 dna N/A N/A P02281 39196936
    878964 8uw1:H (2.88) BS02 dna N/A N/A P02281 39196936
    878965 8uw2:A (2.2) BS01 XOO N/A N/A P31749 N/A
    878966 8uw3:A (3.2) BS01 rna 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096901
    878967 8uw3:A (3.2) BS02 dna 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096901
    878968 8uw3:A (3.2) BS03 TTP 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096901
    878969 8uw6:A (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878970 8uw6:A (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878971 8uw6:B (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878972 8uw6:B (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878973 8uw6:B (1.8) BS03 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878974 8uw6:C (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878975 8uw6:C (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878976 8uw6:D (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878977 8uw6:D (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878978 8uw6:D (1.8) BS03 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    878979 8uw7:A (1.972) BS01 XOO N/A N/A P31749 N/A
    878980 8uw8:A (2.3) BS01 CA N/A N/A Q14703 38977690
    878981 8uw9:A (1.9) BS01 XQ2 N/A N/A P31749 N/A
    878982 8uw9:A (1.9) BS02 ZN N/A N/A P31749 N/A
    878983 8uwa:B (4.02) BS01 MAN ? GO:0019031 ... C6KNH7 38670113
    878984 8uwb:C (3.15) BS01 MN ? GO:0004722 ... P30153 38582449
    878985 8uwb:C (3.15) BS02 MN ? GO:0004722 ... P30153 38582449
    878986 8uwb:F (3.15) BS01 MN ? GO:0004722 ... P30153 38582449
    878987 8uwb:F (3.15) BS02 MN ? GO:0004722 ... P30153 38582449
    878988 8uwp:A (1.77) BS01 XRU 2.1.1.366 N/A Q15047 N/A
    878989 8uwp:B (1.77) BS01 XRU 2.1.1.366 N/A Q15047 N/A
    878990 8uws:A (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    878991 8uws:B (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    878992 8uws:C (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    878993 8uws:D (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    878994 8uwv:A (1.08) BS01 MG ? GO:0046872 ... Q8A0N7 N/A
    878995 8ux1:A (2.5) BS01 dna ? GO:0000785 ... P02299 N/A
    878996 8ux1:A (2.5) BS02 dna ? GO:0000785 ... P02299 N/A
    878997 8ux1:B (2.5) BS01 dna ? GO:0000228 ... P84040 N/A
    878998 8ux1:B (2.5) BS02 dna ? GO:0000228 ... P84040 N/A
    878999 8ux1:C (2.5) BS01 dna ? GO:0000786 ... P84051 N/A
    879000 8ux1:C (2.5) BS02 dna ? GO:0000786 ... P84051 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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