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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870401 8tdi:G (2.6) BS01 NAD N/A N/A N/A 38898276
    870402 8tdi:H (2.6) BS01 NAD N/A N/A N/A 38898276
    870403 8tdi:I (2.6) BS01 NAD N/A N/A N/A 38898276
    870404 8tdi:J (2.6) BS01 NAD N/A N/A N/A 38898276
    870405 8tdi:K (2.6) BS01 NAD N/A N/A N/A 38898276
    870406 8tdi:L (2.6) BS01 NAD N/A N/A N/A 38898276
    870407 8tdp:A (1.85) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    870408 8tdp:A (1.85) BS02 YTT 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    870409 8tdq:A (1.65) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    870410 8tdq:A (1.65) BS02 YTT 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    870411 8tdr:A (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870412 8tdr:B (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870413 8tdr:C (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870414 8tdr:D (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870415 8tdu:A (3.11) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870416 8tdu:A (3.11) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870417 8tdu:C (3.11) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870418 8tdu:C (3.11) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    870419 8tdv:A (3.44) BS01 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870420 8tdv:A (3.44) BS02 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870421 8tdv:A (3.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870422 8tdv:B (3.44) BS01 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870423 8tdv:B (3.44) BS02 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870424 8tdv:B (3.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870425 8tdw:A (3.04) BS01 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870426 8tdw:A (3.04) BS02 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870427 8tdw:A (3.04) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870428 8tdw:B (3.04) BS01 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870429 8tdw:B (3.04) BS02 rna 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870430 8tdw:B (3.04) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    870431 8tdx:A (2.09) BS01 peptide N/A N/A N/A N/A
    870432 8tdx:B (2.09) BS01 peptide N/A N/A N/A N/A
    870433 8tdx:C (2.09) BS01 peptide N/A N/A N/A N/A
    870434 8tdx:D (2.09) BS01 peptide N/A N/A N/A N/A
    870435 8te1:A (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870436 8te1:B (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870437 8te1:C (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870438 8te1:D (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870439 8te3:A (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870440 8te3:B (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870441 8te3:C (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870442 8te3:D (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870443 8te4:A (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870444 8te4:B (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870445 8te4:C (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870446 8te4:D (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    870447 8te9:A (1.25) BS01 8X3 N/A N/A Q312S0 N/A
    870448 8te9:B (1.25) BS01 8X3 N/A N/A Q312S0 N/A
    870449 8teb:A (2.2) BS01 MG 2.7.1.36 GO:0000287 ... Q12TI0 38411551
    870450 8tec:A (2.04) BS01 peptide N/A N/A Q8CIB5 38904068
    870451 8ted:A (2.1) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    870452 8ted:A (2.1) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    870453 8ted:B (2.1) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    870454 8ted:B (2.1) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    870455 8ted:B (2.1) BS03 CA ? GO:0000160 ... A5FFU4 N/A
    870456 8tee:A (2.49) BS01 peptide N/A N/A Q8CIB5 38904068
    870457 8tee:B (2.49) BS01 peptide N/A N/A Q8CIB5 38904068
    870458 8tef:A (2.85) BS01 MG ? GO:0000160 ... A5FFU4 N/A
    870459 8tef:B (2.85) BS01 MG ? GO:0000160 ... A5FFU4 N/A
    870460 8tef:C (2.85) BS01 MG ? GO:0000160 ... A5FFU4 N/A
    870461 8tef:D (2.85) BS01 MG ? GO:0000160 ... A5FFU4 N/A
    870462 8teg:A (2.15) BS01 peptide N/A GO:0005768 ... Q8VYR7 N/A
    870463 8tey:1 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870464 8tey:1 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870465 8tey:2 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870466 8tey:2 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870467 8tey:3 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870468 8tey:3 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870469 8tey:4 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870470 8tey:4 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870471 8tey:5 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870472 8tey:5 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870473 8tey:6 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870474 8tey:6 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870475 8tey:7 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870476 8tey:7 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870477 8tey:8 (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870478 8tey:8 (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870479 8tey:A (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870480 8tey:A (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870481 8tey:B (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870482 8tey:B (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870483 8tey:C (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870484 8tey:C (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870485 8tey:D (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870486 8tey:D (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870487 8tey:E (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870488 8tey:E (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870489 8tey:F (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870490 8tey:F (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870491 8tey:G (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870492 8tey:G (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870493 8tey:H (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870494 8tey:H (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870495 8tey:I (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870496 8tey:I (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870497 8tey:J (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870498 8tey:J (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870499 8tey:K (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870500 8tey:K (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870501 8tey:L (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870502 8tey:L (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870503 8tey:M (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870504 8tey:M (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870505 8tey:N (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870506 8tey:N (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870507 8tey:O (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870508 8tey:O (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870509 8tey:P (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870510 8tey:P (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870511 8tey:Q (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870512 8tey:Q (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870513 8tey:R (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870514 8tey:R (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870515 8tey:S (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870516 8tey:S (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870517 8tey:T (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870518 8tey:T (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870519 8tey:U (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870520 8tey:U (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870521 8tey:V (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870522 8tey:V (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870523 8tey:W (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870524 8tey:W (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870525 8tey:X (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870526 8tey:X (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870527 8tey:Y (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870528 8tey:Y (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870529 8tey:Z (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870530 8tey:Z (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870531 8tey:a (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870532 8tey:a (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870533 8tey:b (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870534 8tey:b (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870535 8tey:c (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870536 8tey:c (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870537 8tey:d (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870538 8tey:d (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870539 8tey:e (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870540 8tey:e (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870541 8tey:f (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870542 8tey:f (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870543 8tey:g (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870544 8tey:g (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870545 8tey:h (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870546 8tey:h (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870547 8tey:i (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870548 8tey:i (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870549 8tey:j (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870550 8tey:j (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870551 8tey:k (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870552 8tey:k (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870553 8tey:l (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870554 8tey:l (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870555 8tey:m (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870556 8tey:m (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870557 8tey:n (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870558 8tey:n (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870559 8tey:o (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870560 8tey:o (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870561 8tey:p (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870562 8tey:p (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870563 8tey:q (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870564 8tey:q (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870565 8tey:r (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870566 8tey:r (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870567 8tey:s (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870568 8tey:s (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870569 8tey:t (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870570 8tey:t (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870571 8tey:u (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870572 8tey:u (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870573 8tey:v (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870574 8tey:v (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870575 8tey:w (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870576 8tey:w (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870577 8tey:x (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870578 8tey:x (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870579 8tey:y (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870580 8tey:y (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870581 8tey:z (3.06) BS01 DA ? GO:0005198 ... Q7TG43 37702486
    870582 8tey:z (3.06) BS02 DA ? GO:0005198 ... Q7TG43 37702486
    870583 8tf2:A (2.57) BS01 ERG ? GO:0005216 ... Q9XSM3 38141613
    870584 8tf2:A (2.57) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    870585 8tf2:A (2.57) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    870586 8tf2:A (2.57) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    870587 8tf2:A (2.57) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    870588 8tf2:A (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870589 8tf2:A (2.57) BS07 CPL ? GO:0005216 ... Q9XSM3 38141613
    870590 8tf2:A (2.57) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870591 8tf2:A (2.57) BS09 ERG ? GO:0005216 ... Q9XSM3 38141613
    870592 8tf2:B (2.57) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    870593 8tf2:B (2.57) BS02 CPL ? GO:0005216 ... Q9XSM3 38141613
    870594 8tf2:B (2.57) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    870595 8tf2:B (2.57) BS04 ERG ? GO:0005216 ... Q9XSM3 38141613
    870596 8tf2:B (2.57) BS05 ERG ? GO:0005216 ... Q9XSM3 38141613
    870597 8tf2:B (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    870598 8tf2:B (2.57) BS07 CPL ? GO:0005216 ... Q9XSM3 38141613
    870599 8tf2:B (2.57) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    870600 8tf2:B (2.57) BS09 ERG ? GO:0005216 ... Q9XSM3 38141613
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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