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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    870001 8tbk:A (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870002 8tbk:A (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870003 8tbk:B (1.26) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    870004 8tbk:B (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870005 8tbk:B (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870006 8tbk:C (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870007 8tbk:D (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870008 8tbl:A (1.88) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    870009 8tbl:A (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870010 8tbl:A (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870011 8tbl:B (1.88) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    870012 8tbl:B (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870013 8tbl:B (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870014 8tbl:C (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870015 8tbl:D (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870016 8tbm:A (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    870017 8tbm:A (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870018 8tbm:A (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870019 8tbm:B (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    870020 8tbm:B (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870021 8tbm:B (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870022 8tbm:C (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870023 8tbm:D (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870024 8tbn:A (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    870025 8tbn:A (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870026 8tbn:A (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870027 8tbn:B (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    870028 8tbn:B (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    870029 8tbn:B (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    870030 8tbn:C (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870031 8tbn:D (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870032 8tbp:A (3.12621) BS01 peptide ? GO:0006955 ... P01903 38321013
    870033 8tbp:B (3.12621) BS01 peptide ? GO:0006955 ... P01911 38321013
    870034 8tbp:C (3.12621) BS01 peptide ? GO:0006955 ... P01903 38321013
    870035 8tbp:D (3.12621) BS01 peptide ? GO:0006955 ... P01911 38321013
    870036 8tbr:A (1.75) BS01 NAP N/A N/A A0PQG8 N/A
    870037 8tbr:A (1.75) BS02 HIJ N/A N/A A0PQG8 N/A
    870038 8tbs:A (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870039 8tbs:A (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870040 8tbs:A (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870041 8tbs:A (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870042 8tbs:B (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870043 8tbs:B (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870044 8tbs:B (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870045 8tbs:B (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870046 8tbs:C (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870047 8tbs:C (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870048 8tbs:C (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870049 8tbs:C (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870050 8tbs:D (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870051 8tbs:D (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870052 8tbs:D (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870053 8tbs:D (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870054 8tbs:E (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870055 8tbs:E (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870056 8tbs:E (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870057 8tbs:E (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870058 8tbs:F (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870059 8tbs:F (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870060 8tbs:F (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870061 8tbs:F (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870062 8tbs:G (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870063 8tbs:G (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870064 8tbs:G (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870065 8tbs:G (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870066 8tbs:H (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    870067 8tbs:H (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870068 8tbs:H (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870069 8tbs:H (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870070 8tbt:A (2.34) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870071 8tbt:A (2.34) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870072 8tbt:A (2.34) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870073 8tbt:A (2.34) BS04 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    870074 8tbt:B (2.34) BS01 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    870075 8tbt:B (2.34) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870076 8tbt:B (2.34) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870077 8tbt:B (2.34) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870078 8tbt:C (2.34) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870079 8tbt:C (2.34) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870080 8tbt:C (2.34) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870081 8tbt:C (2.34) BS04 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    870082 8tbt:D (2.34) BS01 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    870083 8tbt:D (2.34) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870084 8tbt:D (2.34) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870085 8tbt:D (2.34) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870086 8tbu:A (2.35) BS01 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870087 8tbu:A (2.35) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870088 8tbu:A (2.35) BS03 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870089 8tbu:A (2.35) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870090 8tbu:B (2.35) BS01 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870091 8tbu:B (2.35) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870092 8tbu:B (2.35) BS03 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870093 8tbu:B (2.35) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870094 8tbu:C (2.35) BS01 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870095 8tbu:C (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870096 8tbu:C (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870097 8tbu:C (2.35) BS04 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870098 8tbu:D (2.35) BS01 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870099 8tbu:D (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870100 8tbu:D (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870101 8tbu:E (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870102 8tbu:E (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870103 8tbu:E (2.35) BS03 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870104 8tbu:F (2.35) BS01 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870105 8tbu:F (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870106 8tbu:F (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870107 8tbu:G (2.35) BS01 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    870108 8tbu:G (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870109 8tbu:G (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870110 8tbu:G (2.35) BS04 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870111 8tbu:H (2.35) BS01 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    870112 8tbu:H (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    870113 8tbu:H (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    870114 8tbv:A (2.64) BS01 peptide ? N/A Q53Z42 38113889
    870115 8tbv:D (2.64) BS01 peptide ? N/A Q53Z42 38113889
    870116 8tbw:A (2.081) BS01 peptide ? N/A A0A140T913 38113889
    870117 8tbw:D (2.081) BS01 peptide ? N/A A0A140T913 38113889
    870118 8tbx:A (2.71) BS01 ADP 3.6.4.13 GO:0003676 ... Q92499 N/A
    870119 8tbx:A (2.71) BS02 ZN 3.6.4.13 GO:0003676 ... Q92499 N/A
    870120 8tc0:A (1.88) BS01 EIC ? GO:0016020 ... U5WI05 38805567
    870121 8tc0:B (1.88) BS01 FUC ? GO:0016020 ... U5WI05 38805567
    870122 8tc0:B (1.88) BS02 EIC ? GO:0016020 ... U5WI05 38805567
    870123 8tc0:C (1.88) BS01 EIC ? GO:0016020 ... U5WI05 38805567
    870124 8tc1:A (1.92) BS01 EIC ? GO:0016020 ... Q3ZTF3 38805567
    870125 8tc1:B (1.92) BS01 EIC ? GO:0016020 ... Q3ZTF3 38805567
    870126 8tc1:C (1.92) BS01 EIC ? GO:0016020 ... Q3ZTF3 38805567
    870127 8tc3:A (2.57) BS01 SF4 ?
    1.18.6.1    		 GO:0005524 ... P00459
    Q5S3G7    		 38575747
    870128 8tc3:B (2.57) BS01 SF4 ?
    1.18.6.1    		 GO:0005524 ... P00459
    Q5S3G7    		 38575747
    870129 8tc5:A (2.11) BS01 EIC N/A GO:0016020 ... P59594 38805567
    870130 8tc5:B (2.11) BS01 EIC N/A GO:0016020 ... P59594 38805567
    870131 8tc5:C (2.11) BS01 FUC N/A GO:0016020 ... P59594 38805567
    870132 8tc5:C (2.11) BS02 EIC N/A GO:0016020 ... P59594 38805567
    870133 8tc8:A (1.9) BS01 NSS 6.1.1.22 GO:0000166 ... O43776 38297033
    870134 8tc8:B (1.9) BS01 NSS 6.1.1.22 GO:0000166 ... O43776 38297033
    870135 8tc8:C (1.9) BS01 NSS 6.1.1.22 GO:0000166 ... O43776 38297033
    870136 8tc8:D (1.9) BS01 NSS 6.1.1.22 GO:0000166 ... O43776 38297033
    870137 8tc9:A (2.0) BS01 ZTE 6.1.1.22 GO:0000166 ... O43776 38297033
    870138 8tc9:B (2.0) BS01 ZTE 6.1.1.22 GO:0000166 ... O43776 38297033
    870139 8tc9:C (2.0) BS01 ZTE 6.1.1.22 GO:0000166 ... O43776 38297033
    870140 8tc9:D (2.0) BS01 ZTE 6.1.1.22 GO:0000166 ... O43776 38297033
    870141 8tcc:A (3.1) BS01 MN N/A GO:0003933 ... A0A069BB45 N/A
    870142 8tcc:A (3.1) BS02 SO3 N/A GO:0003933 ... A0A069BB45 N/A
    870143 8tcc:B (3.1) BS01 ZS9 N/A GO:0003933 ... A0A069BB45 N/A
    870144 8tcc:C (3.1) BS01 ZS9 N/A GO:0003933 ... A0A069BB45 N/A
    870145 8tcc:D (3.1) BS01 ZS9 N/A GO:0003933 ... A0A069BB45 N/A
    870146 8tcd:A (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870147 8tcd:B (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870148 8tcd:C (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870149 8tcd:D (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870150 8tce:A (1.07) BS01 HWF 3.4.21.- N/A P08519 38720069
    870151 8tce:B (1.07) BS01 HWF 3.4.21.- N/A P08519 38720069
    870152 8tcf:A (2.9) BS01 CA ? GO:0007155 ... P06756 37704610
    870153 8tcf:A (2.9) BS02 CA ? GO:0007155 ... P06756 37704610
    870154 8tcf:A (2.9) BS03 CA ? GO:0007155 ... P06756 37704610
    870155 8tcf:A (2.9) BS04 CA ? GO:0007155 ... P06756 37704610
    870156 8tcf:B (2.9) BS01 CA ? N/A P26012 37704610
    870157 8tcf:B (2.9) BS02 MG ? N/A P26012 37704610
    870158 8tcg:A (3.4) BS01 CA ? GO:0007155 ... P06756 37704610
    870159 8tcg:A (3.4) BS02 CA ? GO:0007155 ... P06756 37704610
    870160 8tcg:A (3.4) BS03 CA ? GO:0007155 ... P06756 37704610
    870161 8tcg:A (3.4) BS04 CA ? GO:0007155 ... P06756 37704610
    870162 8tcg:B (3.4) BS01 MN ? N/A P18564 37704610
    870163 8tcg:B (3.4) BS02 MN ? N/A P18564 37704610
    870164 8tcg:B (3.4) BS03 MN ? N/A P18564 37704610
    870165 8tci:A (3.19) BS01 dna N/A N/A P0DOY1 39098534
    870166 8tci:A (3.19) BS02 dna N/A N/A P0DOY1 39098534
    870167 8tci:A (3.19) BS03 SAH N/A N/A P0DOY1 39098534
    870168 8tci:D (3.19) BS01 dna N/A N/A P0DOY1 39098534
    870169 8tci:D (3.19) BS02 dna N/A N/A P0DOY1 39098534
    870170 8tci:D (3.19) BS03 SAH N/A N/A P0DOY1 39098534
    870171 8tcl:B (1.95) BS01 TNF N/A N/A P04585 N/A
    870172 8tcl:B (1.95) BS02 TNF N/A N/A P04585 N/A
    870173 8tcl:B (1.95) BS03 TNF N/A N/A P04585 N/A
    870174 8tcm:B (1.82) BS01 TNF N/A N/A P04585 N/A
    870175 8tcm:B (1.82) BS02 TNF N/A N/A P04585 N/A
    870176 8tcm:B (1.82) BS03 TNF N/A N/A P04585 N/A
    870177 8tcm:B (1.82) BS04 ZQT N/A N/A P04585 N/A
    870178 8tcm:B (1.82) BS05 ZQT N/A N/A P04585 N/A
    870179 8tcr:A (2.08) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870180 8tcr:A (2.08) BS02 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870181 8tcr:A (2.08) BS03 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870182 8tcr:B (2.08) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870183 8tcr:B (2.08) BS02 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870184 8tcr:B (2.08) BS03 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870185 8tcr:B (2.08) BS04 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870186 8tcr:C (2.08) BS01 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870187 8tcr:C (2.08) BS02 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870188 8tcr:D (2.08) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870189 8tcr:D (2.08) BS02 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870190 8tcr:D (2.08) BS03 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870191 8tcr:D (2.08) BS04 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    870192 8tcs:A (1.5) BS01 GLC N/A N/A N/A 38898276
    870193 8tcs:A (1.5) BS02 CO N/A N/A N/A 38898276
    870194 8tcs:B (1.5) BS01 GLC N/A N/A N/A 38898276
    870195 8tcs:B (1.5) BS02 CO N/A N/A N/A 38898276
    870196 8tcs:C (1.5) BS01 GLC N/A N/A N/A 38898276
    870197 8tcs:C (1.5) BS02 CO N/A N/A N/A 38898276
    870198 8tcs:D (1.5) BS01 GLC N/A N/A N/A 38898276
    870199 8tcs:D (1.5) BS02 CO N/A N/A N/A 38898276
    870200 8tct:A (1.86) BS01 UC6 ? GO:0016853 ... Q8A5T2 38898276
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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