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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869801 8t98:A (1.3) BS01 U6J 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    869802 8t98:A (1.3) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    869803 8t98:A (1.3) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    869804 8t99:A (1.5) BS01 ZOW 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    869805 8t99:A (1.5) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    869806 8t99:A (1.5) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    869807 8t9a:B (3.17) BS01 peptide ? GO:0005515 ... Q5T6F0 N/A
    869808 8t9c:A (2.7) BS01 dna ? GO:0005198 ... A0AA49KFV0 N/A
    869809 8t9c:A (2.7) BS02 dna ? GO:0005198 ... A0AA49KFV0 N/A
    869810 8t9d:C (4.66) BS01 peptide N/A GO:0000151 ... O75586 38955181
    869811 8t9f:A (2.6) BS01 dna ? GO:0000786 ... P84233 37595555
    869812 8t9f:A (2.6) BS02 dna ? GO:0000786 ... P84233 37595555
    869813 8t9f:B (2.6) BS01 dna ? GO:0000786 ... P62799 37595555
    869814 8t9f:B (2.6) BS02 dna ? GO:0000786 ... P62799 37595555
    869815 8t9f:C (2.6) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    869816 8t9f:C (2.6) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    869817 8t9f:D (2.6) BS01 dna ? GO:0000786 ... P02281 37595555
    869818 8t9f:E (2.6) BS01 dna ? GO:0000786 ... P84233 37595555
    869819 8t9f:E (2.6) BS02 dna ? GO:0000786 ... P84233 37595555
    869820 8t9f:F (2.6) BS01 dna ? GO:0000786 ... P62799 37595555
    869821 8t9f:F (2.6) BS02 dna ? GO:0000786 ... P62799 37595555
    869822 8t9f:G (2.6) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    869823 8t9f:G (2.6) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    869824 8t9f:H (2.6) BS01 dna ? GO:0000786 ... P02281 37595555
    869825 8t9f:H (2.6) BS02 dna ? GO:0000786 ... P02281 37595555
    869826 8t9f:K (2.6) BS01 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 37595555
    869827 8t9g:A (6.2) BS01 dna N/A N/A P84233 N/A
    869828 8t9g:A (6.2) BS02 dna N/A N/A P84233 N/A
    869829 8t9g:C (6.2) BS01 SAH N/A N/A Q15910 N/A
    869830 8t9g:I (6.2) BS01 dna N/A N/A Q15910 N/A
    869831 8t9g:I (6.2) BS02 SAH N/A N/A Q15910 N/A
    869832 8t9g:J (6.2) BS01 dna N/A N/A P62799 N/A
    869833 8t9g:J (6.2) BS02 dna N/A N/A P62799 N/A
    869834 8t9g:K (6.2) BS01 peptide N/A N/A O75530 N/A
    869835 8t9g:R (6.2) BS01 dna N/A N/A P06897 N/A
    869836 8t9g:R (6.2) BS02 dna N/A N/A P06897 N/A
    869837 8t9g:S (6.2) BS01 dna N/A N/A P02281 N/A
    869838 8t9g:S (6.2) BS02 dna N/A N/A P02281 N/A
    869839 8t9g:U (6.2) BS01 dna N/A N/A P06897 N/A
    869840 8t9g:U (6.2) BS02 dna N/A N/A P06897 N/A
    869841 8t9g:V (6.2) BS01 dna N/A N/A P02281 N/A
    869842 8t9g:V (6.2) BS02 dna N/A N/A P02281 N/A
    869843 8t9g:W (6.2) BS01 dna N/A N/A P84233 N/A
    869844 8t9g:W (6.2) BS02 dna N/A N/A P84233 N/A
    869845 8t9g:X (6.2) BS01 dna N/A N/A P62799 N/A
    869846 8t9g:X (6.2) BS02 dna N/A N/A P62799 N/A
    869847 8t9h:A (3.37) BS01 dna ? GO:0000786 ... P84233 36993485
    869848 8t9h:A (3.37) BS02 dna ? GO:0000786 ... P84233 36993485
    869849 8t9h:B (3.37) BS01 dna ? GO:0000786 ... P62799 36993485
    869850 8t9h:B (3.37) BS02 dna ? GO:0000786 ... P62799 36993485
    869851 8t9h:C (3.37) BS01 dna ? GO:0000786 ... P06897 36993485
    869852 8t9h:C (3.37) BS02 dna ? GO:0000786 ... P06897 36993485
    869853 8t9h:D (3.37) BS01 dna ? GO:0000786 ... P02281 36993485
    869854 8t9h:E (3.37) BS01 dna ? GO:0000786 ... P84233 36993485
    869855 8t9h:E (3.37) BS02 dna ? GO:0000786 ... P84233 36993485
    869856 8t9h:F (3.37) BS01 dna ? GO:0000786 ... P62799 36993485
    869857 8t9h:F (3.37) BS02 dna ? GO:0000786 ... P62799 36993485
    869858 8t9h:G (3.37) BS01 dna ? GO:0000786 ... P06897 36993485
    869859 8t9h:H (3.37) BS01 dna ? GO:0000786 ... P02281 36993485
    869860 8t9u:F (1.47) BS01 dna ? GO:0003700 ... P17947 38042148
    869861 8t9u:F (1.47) BS02 dna ? GO:0003700 ... P17947 38042148
    869862 8t9v:A (1.945) BS01 ZJT 3.2.2.22 GO:0017148 ... P02879 38340640
    869863 8t9x:A (2.0) BS01 dna ? GO:0005198 ... A0AA49QGS8 N/A
    869864 8t9x:A (2.0) BS02 dna ? GO:0005198 ... A0AA49QGS8 N/A
    869865 8ta0:A (1.95) BS01 DQI N/A N/A A0PQG8 N/A
    869866 8ta0:A (1.95) BS02 NAP N/A N/A A0PQG8 N/A
    869867 8ta1:A (1.5) BS01 EII N/A N/A A0PQG8 N/A
    869868 8ta1:A (1.5) BS02 NAP N/A N/A A0PQG8 N/A
    869869 8ta2:A (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    869870 8ta2:A (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    869871 8ta2:B (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    869872 8ta2:B (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    869873 8tab:A (2.26) BS01 U4T 3.2.2.22 GO:0017148 ... P02879 38340640
    869874 8tac:B (2.34) BS01 dna N/A N/A N/A N/A
    869875 8tac:B (2.34) BS02 dna N/A N/A N/A N/A
    869876 8tad:A (2.76) BS01 ZXJ 3.2.2.22 GO:0017148 ... P02879 38340640
    869877 8taf:J (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869878 8taf:L (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869879 8taf:M (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869880 8taf:N (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869881 8taf:O (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869882 8taf:P (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869883 8taf:Q (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869884 8taf:R (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    869885 8tag:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    869886 8tag:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    869887 8tag:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    869888 8tah:A (2.89) BS01 peptide ? GO:0003779 ... P61157 37898612
    869889 8tah:A (2.89) BS02 ATP ? GO:0003779 ... P61157 37898612
    869890 8tah:B (2.89) BS01 ATP ? GO:0003779 ... A7MB62 37898612
    869891 8tai:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    869892 8tai:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    869893 8tai:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    869894 8tal:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    869895 8tal:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    869896 8tal:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    869897 8tao:A (2.9) BS01 QUS ? GO:0004930 ... P41594 38632403
    869898 8tao:B (2.9) BS01 YKU ? GO:0004930 ... P41594 38632403
    869899 8tao:B (2.9) BS02 QUS ? GO:0004930 ... P41594 38632403
    869900 8tas:E (4.1) BS01 dna N/A N/A Q15910 N/A
    869901 8tas:E (4.1) BS02 SAH N/A N/A Q15910 N/A
    869902 8tas:I (4.1) BS01 dna N/A N/A P84233 N/A
    869903 8tas:I (4.1) BS02 dna N/A N/A P84233 N/A
    869904 8tas:J (4.1) BS01 dna N/A N/A P62799 N/A
    869905 8tas:J (4.1) BS02 dna N/A N/A P62799 N/A
    869906 8tas:R (4.1) BS01 dna N/A N/A Q6AZJ8 N/A
    869907 8tas:R (4.1) BS02 dna N/A N/A Q6AZJ8 N/A
    869908 8tas:S (4.1) BS01 dna N/A N/A P02281 N/A
    869909 8tas:S (4.1) BS02 dna N/A N/A P02281 N/A
    869910 8tas:U (4.1) BS01 dna N/A N/A Q6AZJ8 N/A
    869911 8tas:U (4.1) BS02 dna N/A N/A Q6AZJ8 N/A
    869912 8tas:V (4.1) BS01 dna N/A N/A P02281 N/A
    869913 8tas:V (4.1) BS02 dna N/A N/A P02281 N/A
    869914 8tas:W (4.1) BS01 dna N/A N/A P84233 N/A
    869915 8tas:W (4.1) BS02 dna N/A N/A P84233 N/A
    869916 8tas:X (4.1) BS01 dna N/A N/A P62799 N/A
    869917 8tas:X (4.1) BS02 dna N/A N/A P62799 N/A
    869918 8tat:A (1.6) BS01 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    869919 8tat:A (1.6) BS02 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    869920 8tav:A (1.39) BS01 ZKR N/A GO:0016020 ... Q2G025 N/A
    869921 8tav:A (1.39) BS02 ZKR N/A GO:0016020 ... Q2G025 N/A
    869922 8tav:A (1.39) BS03 ZKR N/A GO:0016020 ... Q2G025 N/A
    869923 8tav:A (1.39) BS04 CA N/A GO:0016020 ... Q2G025 N/A
    869924 8tav:A (1.39) BS05 CA N/A GO:0016020 ... Q2G025 N/A
    869925 8taw:A (1.73) BS01 HEM ? GO:0004497 ... Q2IU02 37837941
    869926 8taw:A (1.73) BS02 PQS ? GO:0004497 ... Q2IU02 37837941
    869927 8tay:A (2.021) BS01 EJD ? GO:0004497 ... Q2IU02 37837941
    869928 8tay:A (2.021) BS02 HEM ? GO:0004497 ... Q2IU02 37837941
    869929 8tb2:A (1.88) BS01 CA ? N/A Q8NUV0 38568806
    869930 8tb5:A (2.32) BS01 ZOQ 2.7.10.2 GO:0004672 ... P29597 37823891
    869931 8tb5:B (2.32) BS01 ZOQ 2.7.10.2 GO:0004672 ... P29597 37823891
    869932 8tb6:A (1.96) BS01 ZOI 2.7.10.2 GO:0004672 ... P29597 37823891
    869933 8tb6:B (1.96) BS01 ZOI 2.7.10.2 GO:0004672 ... P29597 37823891
    869934 8tb7:R (2.94) BS01 ZOB ? GO:0004930 ... P0ABE7
    Q9BZJ8    		 37741852
    869935 8tb9:A (4.0) BS01 dna N/A N/A P07305 N/A
    869936 8tb9:A (4.0) BS02 dna N/A N/A P07305 N/A
    869937 8tb9:D (4.0) BS01 peptide N/A N/A Q15022 N/A
    869938 8tb9:E (4.0) BS01 dna N/A N/A Q15910 N/A
    869939 8tb9:E (4.0) BS02 SAH N/A N/A Q15910 N/A
    869940 8tb9:I (4.0) BS01 dna N/A N/A P84233 N/A
    869941 8tb9:I (4.0) BS02 dna N/A N/A P84233 N/A
    869942 8tb9:J (4.0) BS01 dna N/A N/A P62799 N/A
    869943 8tb9:R (4.0) BS01 dna N/A N/A P06897 N/A
    869944 8tb9:R (4.0) BS02 dna N/A N/A P06897 N/A
    869945 8tb9:S (4.0) BS01 dna N/A N/A P02281 N/A
    869946 8tb9:S (4.0) BS02 dna N/A N/A P02281 N/A
    869947 8tb9:U (4.0) BS01 dna N/A N/A P06897 N/A
    869948 8tb9:U (4.0) BS02 dna N/A N/A P06897 N/A
    869949 8tb9:V (4.0) BS01 dna N/A N/A P02281 N/A
    869950 8tb9:V (4.0) BS02 dna N/A N/A P02281 N/A
    869951 8tb9:W (4.0) BS01 dna N/A N/A P84233 N/A
    869952 8tb9:W (4.0) BS02 dna N/A N/A P84233 N/A
    869953 8tb9:X (4.0) BS01 dna N/A N/A P62799 N/A
    869954 8tb9:X (4.0) BS02 dna N/A N/A P62799 N/A
    869955 8tba:A (1.65) BS01 ZMX N/A GO:0008360 ... Q9ZLT0 N/A
    869956 8tba:A (1.65) BS02 DGL N/A GO:0008360 ... Q9ZLT0 N/A
    869957 8tba:B (1.65) BS01 DGL N/A GO:0008360 ... Q9ZLT0 N/A
    869958 8tbe:A (2.15) BS01 ZQB 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37800975
    869959 8tbe:B (2.15) BS01 ZQB 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37800975
    869960 8tbf:A (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    869961 8tbf:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    869962 8tbf:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    869963 8tbf:B (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    869964 8tbf:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    869965 8tbf:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    869966 8tbf:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869967 8tbf:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869968 8tbg:A (1.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 38589574
    869969 8tbg:A (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    869970 8tbg:A (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    869971 8tbg:B (1.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 38589574
    869972 8tbg:B (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    869973 8tbg:B (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    869974 8tbg:C (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869975 8tbg:D (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869976 8tbh:A (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    869977 8tbh:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    869978 8tbh:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    869979 8tbh:B (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    869980 8tbh:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    869981 8tbh:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    869982 8tbh:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869983 8tbh:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869984 8tbi:A (1.59) BS01 GNP 3.6.5.2 GO:0000139 ... P01111 38589574
    869985 8tbi:A (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    869986 8tbi:A (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    869987 8tbi:B (1.59) BS01 GNP 3.6.5.2 GO:0000139 ... P01111 38589574
    869988 8tbi:B (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    869989 8tbi:B (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    869990 8tbi:C (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869991 8tbi:D (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869992 8tbj:A (1.45) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    869993 8tbj:A (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    869994 8tbj:A (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    869995 8tbj:B (1.45) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    869996 8tbj:B (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    869997 8tbj:B (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    869998 8tbj:C (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    869999 8tbj:D (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    870000 8tbk:A (1.26) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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