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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869201 8t74:A (1.65) BS01 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    869202 8t74:A (1.65) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869203 8t75:A (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869204 8t75:A (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    869205 8t75:B (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869206 8t75:B (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869207 8t75:C (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869208 8t75:C (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    869209 8t75:D (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869210 8t75:D (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869211 8t75:E (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869212 8t75:E (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    869213 8t75:F (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869214 8t75:F (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869215 8t75:G (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869216 8t75:G (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    869217 8t75:H (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869218 8t75:H (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    869219 8t76:A (3.42) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869220 8t76:A (3.42) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869221 8t76:A (3.42) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869222 8t77:A (3.25) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869223 8t77:A (3.25) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869224 8t77:A (3.25) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869225 8t78:A (3.02) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869226 8t78:A (3.02) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869227 8t78:A (3.02) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869228 8t79:A (3.04) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869229 8t79:A (3.04) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869230 8t79:A (3.04) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869231 8t7c:A (2.55) BS01 CA N/A N/A P16885 N/A
    869232 8t7d:A (3.444) BS01 ZT3 N/A N/A O75874 N/A
    869233 8t7d:B (3.444) BS01 ZT3 N/A N/A O75874 N/A
    869234 8t7d:C (3.444) BS01 ZT3 N/A N/A O75874 N/A
    869235 8t7d:D (3.444) BS01 ZT3 N/A N/A O75874 N/A
    869236 8t7e:A (3.08) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38151585
    869237 8t7e:A (3.08) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38151585
    869238 8t7h:A (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    869239 8t7h:B (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    869240 8t7j:A (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    869241 8t7j:B (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    869242 8t7j:C (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    869243 8t7j:D (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    869244 8t7l:A (1.89) BS01 CU N/A N/A Q73MJ7 N/A
    869245 8t7l:B (1.89) BS01 CU N/A N/A Q73MJ7 N/A
    869246 8t7m:A (1.82) BS01 FE N/A N/A Q73MJ7 N/A
    869247 8t7m:A (1.82) BS02 CU N/A N/A Q73MJ7 N/A
    869248 8t7m:B (1.82) BS01 FE N/A N/A Q73MJ7 N/A
    869249 8t7m:B (1.82) BS02 CU N/A N/A Q73MJ7 N/A
    869250 8t7n:A (2.26) BS01 NAP N/A N/A O75874 N/A
    869251 8t7n:A (2.26) BS02 ZT3 N/A N/A O75874 N/A
    869252 8t7n:B (2.26) BS01 NAP N/A N/A O75874 N/A
    869253 8t7n:B (2.26) BS02 ZT3 N/A N/A O75874 N/A
    869254 8t7o:A (2.053) BS01 NAP N/A N/A O75874 N/A
    869255 8t7o:A (2.053) BS02 IV3 N/A N/A O75874 N/A
    869256 8t7o:B (2.053) BS01 IV3 N/A N/A O75874 N/A
    869257 8t7o:B (2.053) BS02 NAP N/A N/A O75874 N/A
    869258 8t7p:A (2.0) BS01 ZN N/A N/A O96935 N/A
    869259 8t7q:A (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    869260 8t7q:B (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    869261 8t7s:A (3.01) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869262 8t7s:A (3.01) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869263 8t7s:A (3.01) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869264 8t7s:A (3.01) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869265 8t7s:A (3.01) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869266 8t7s:A (3.01) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869267 8t7s:A (3.01) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869268 8t7s:G (3.01) BS01 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869269 8t7s:G (3.01) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869270 8t7s:G (3.01) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869271 8t7u:A (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    869272 8t7u:B (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    869273 8t7u:C (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    869274 8t7u:D (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    869275 8t7u:E (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    869276 8t7u:F (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    869277 8t7u:G (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    869278 8t7v:A (2.25) BS01 ZTA ? GO:0005856 ... O00522 37974623
    869279 8t7v:B (2.25) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    869280 8t7v:B (2.25) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    869281 8t7y:A (1.78) BS01 peptide N/A N/A P0DTD1 N/A
    869282 8t7y:B (1.78) BS01 peptide N/A N/A P0DTD1 N/A
    869283 8t81:A (2.6) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869284 8t81:A (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869285 8t81:A (2.6) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869286 8t83:A (2.0) BS01 ZN N/A N/A O96935 N/A
    869287 8t85:A (2.38) BS01 MG ? GO:0000156 ... P0AEV1 37949227
    869288 8t85:A (2.38) BS02 BEF ? GO:0000156 ... P0AEV1 37949227
    869289 8t88:A (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    869290 8t88:A (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    869291 8t88:B (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    869292 8t88:B (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    869293 8t8a:A (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    869294 8t8a:B (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    869295 8t8a:C (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    869296 8t8a:D (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    869297 8t8b:10 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    869298 8t8b:10 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    869299 8t8b:10 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    869300 8t8b:10 (2.65) BS04 MG ? GO:0003735 ... P60493 37433044
    869301 8t8b:10 (2.65) BS05 MG ? GO:0003735 ... P60493 37433044
    869302 8t8b:10 (2.65) BS06 MG ? GO:0003735 ... P60493 37433044
    869303 8t8b:11 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    869304 8t8b:11 (2.65) BS02 MG ? GO:0003735 ... P60494 37433044
    869305 8t8b:12 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    869306 8t8b:13 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    869307 8t8b:13 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    869308 8t8b:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    869309 8t8b:13 (2.65) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    869310 8t8b:14 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    869311 8t8b:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    869312 8t8b:15 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    869313 8t8b:15 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    869314 8t8b:15 (2.65) BS03 MG ? GO:0003735 ... P80339 37433044
    869315 8t8b:15 (2.65) BS04 MG ? GO:0003735 ... P80339 37433044
    869316 8t8b:15 (2.65) BS05 MG ? GO:0003735 ... P80339 37433044
    869317 8t8b:15 (2.65) BS06 ZN ? GO:0003735 ... P80339 37433044
    869318 8t8b:16 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    869319 8t8b:16 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    869320 8t8b:17 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    869321 8t8b:17 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    869322 8t8b:17 (2.65) BS03 MG ? GO:0003735 ... P80340 37433044
    869323 8t8b:18 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    869324 8t8b:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    869325 8t8b:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    869326 8t8b:18 (2.65) BS04 MG ? GO:0003735 ... Q5SKU1 37433044
    869327 8t8b:19 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    869328 8t8b:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    869329 8t8b:1D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    869330 8t8b:1D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    869331 8t8b:1D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    869332 8t8b:1D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044
    869333 8t8b:1D (2.65) BS05 MG ? GO:0002181 ... P60405 37433044
    869334 8t8b:1D (2.65) BS06 MG ? GO:0002181 ... P60405 37433044
    869335 8t8b:1D (2.65) BS07 MG ? GO:0002181 ... P60405 37433044
    869336 8t8b:1D (2.65) BS08 MG ? GO:0002181 ... P60405 37433044
    869337 8t8b:1D (2.65) BS09 MG ? GO:0002181 ... P60405 37433044
    869338 8t8b:1D (2.65) BS10 MG ? GO:0002181 ... P60405 37433044
    869339 8t8b:1D (2.65) BS11 MG ? GO:0002181 ... P60405 37433044
    869340 8t8b:1D (2.65) BS12 MG ? GO:0002181 ... P60405 37433044
    869341 8t8b:1E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    869342 8t8b:1E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    869343 8t8b:1E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    869344 8t8b:1E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    869345 8t8b:1E (2.65) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    869346 8t8b:1F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    869347 8t8b:1F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    869348 8t8b:1F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    869349 8t8b:1F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    869350 8t8b:1F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    869351 8t8b:1F (2.65) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    869352 8t8b:1F (2.65) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    869353 8t8b:1F (2.65) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    869354 8t8b:1F (2.65) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    869355 8t8b:1F (2.65) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    869356 8t8b:1F (2.65) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    869357 8t8b:1F (2.65) BS12 ARG ? GO:0003735 ... Q5SHN9 37433044
    869358 8t8b:1G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    869359 8t8b:1G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    869360 8t8b:1G (2.65) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    869361 8t8b:1H (2.65) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    869362 8t8b:1I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    869363 8t8b:1N (2.65) BS01 rna ? GO:0003729 ... P60488 37433044
    869364 8t8b:1N (2.65) BS02 MG ? GO:0003729 ... P60488 37433044
    869365 8t8b:1N (2.65) BS03 MG ? GO:0003729 ... P60488 37433044
    869366 8t8b:1O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    869367 8t8b:1O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    869368 8t8b:1P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    869369 8t8b:1P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    869370 8t8b:1Q (2.65) BS01 rna ? GO:0000049 ... P60489 37433044
    869371 8t8b:1Q (2.65) BS02 rna ? GO:0000049 ... P60489 37433044
    869372 8t8b:1Q (2.65) BS03 MG ? GO:0000049 ... P60489 37433044
    869373 8t8b:1Q (2.65) BS04 MG ? GO:0000049 ... P60489 37433044
    869374 8t8b:1Q (2.65) BS05 MG ? GO:0000049 ... P60489 37433044
    869375 8t8b:1Q (2.65) BS06 MG ? GO:0000049 ... P60489 37433044
    869376 8t8b:1R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    869377 8t8b:1R (2.65) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    869378 8t8b:1R (2.65) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    869379 8t8b:1R (2.65) BS04 MG ? GO:0003735 ... Q9Z9H5 37433044
    869380 8t8b:1S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    869381 8t8b:1S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    869382 8t8b:1T (2.65) BS01 rna ? GO:0003735 ... P60490 37433044
    869383 8t8b:1T (2.65) BS02 rna ? GO:0003735 ... P60490 37433044
    869384 8t8b:1U (2.65) BS01 rna ? GO:0000027 ... P60491 37433044
    869385 8t8b:1U (2.65) BS02 MG ? GO:0000027 ... P60491 37433044
    869386 8t8b:1U (2.65) BS03 MG ? GO:0000027 ... P60491 37433044
    869387 8t8b:1U (2.65) BS04 MG ? GO:0000027 ... P60491 37433044
    869388 8t8b:1U (2.65) BS05 MG ? GO:0000027 ... P60491 37433044
    869389 8t8b:1U (2.65) BS06 MG ? GO:0000027 ... P60491 37433044
    869390 8t8b:1V (2.65) BS01 rna ? GO:0003723 ... P60492 37433044
    869391 8t8b:1V (2.65) BS02 MG ? GO:0003723 ... P60492 37433044
    869392 8t8b:1V (2.65) BS03 MG ? GO:0003723 ... P60492 37433044
    869393 8t8b:1V (2.65) BS04 MG ? GO:0003723 ... P60492 37433044
    869394 8t8b:1V (2.65) BS05 MG ? GO:0003723 ... P60492 37433044
    869395 8t8b:1W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    869396 8t8b:1W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    869397 8t8b:1W (2.65) BS03 MG ? GO:0003735 ... Q5SHP3 37433044
    869398 8t8b:1X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    869399 8t8b:1X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 37433044
    869400 8t8b:1Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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