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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    869001 8t5d:m (3.2) BS01 rna N/A N/A B7M1M1 38185325
    869002 8t5d:n (3.2) BS01 rna N/A N/A N/A 38185325
    869003 8t5d:n (3.2) BS02 rna N/A N/A N/A 38185325
    869004 8t5d:o (3.2) BS01 rna N/A N/A C3SYP2 38185325
    869005 8t5d:p (3.2) BS01 rna N/A N/A N/A 38185325
    869006 8t5d:q (3.2) BS01 rna N/A N/A W1EY92 38185325
    869007 8t5d:r (3.2) BS01 rna N/A N/A A0A7U9LGZ0 38185325
    869008 8t5d:s (3.2) BS01 rna N/A N/A C3TRH7 38185325
    869009 8t5d:t (3.2) BS01 rna N/A N/A A0A5C9AJ78 38185325
    869010 8t5e:A (3.0) BS01 peptide N/A N/A N/A 38109936
    869011 8t5g:A (1.92) BS01 THA ? GO:0005085 ... Q07890 38156904
    869012 8t5h:0 (3.3) BS01 rna N/A N/A A0A828UBL8 38185325
    869013 8t5h:1 (3.3) BS01 rna N/A N/A N/A 38185325
    869014 8t5h:2 (3.3) BS01 rna N/A N/A B7MGC4 38185325
    869015 8t5h:3 (3.3) BS01 rna N/A N/A N/A 38185325
    869016 8t5h:4 (3.3) BS01 rna N/A N/A A0A0E2L017 38185325
    869017 8t5h:C (3.3) BS01 rna N/A N/A A0A1X3JB59 38185325
    869018 8t5h:D (3.3) BS01 rna N/A N/A P60438 38185325
    869019 8t5h:E (3.3) BS01 rna N/A N/A A1AGK6 38185325
    869020 8t5h:F (3.3) BS01 rna N/A N/A N/A 38185325
    869021 8t5h:F (3.3) BS02 rna N/A N/A N/A 38185325
    869022 8t5h:F (3.3) BS03 rna N/A N/A N/A 38185325
    869023 8t5h:G (3.3) BS01 rna N/A N/A N/A 38185325
    869024 8t5h:J (3.3) BS01 rna N/A N/A N/A 38185325
    869025 8t5h:K (3.3) BS01 rna N/A N/A C3SQZ2 38185325
    869026 8t5h:L (3.3) BS01 rna N/A N/A A0A037Y8L6 38185325
    869027 8t5h:M (3.3) BS01 rna N/A N/A P0ADY7 38185325
    869028 8t5h:M (3.3) BS02 rna N/A N/A P0ADY7 38185325
    869029 8t5h:N (3.3) BS01 rna N/A N/A A0A2T1LEK9 38185325
    869030 8t5h:O (3.3) BS01 rna N/A N/A N/A 38185325
    869031 8t5h:O (3.3) BS02 rna N/A N/A N/A 38185325
    869032 8t5h:P (3.3) BS01 rna N/A N/A S1PSA3 38185325
    869033 8t5h:P (3.3) BS02 rna N/A N/A S1PSA3 38185325
    869034 8t5h:Q (3.3) BS01 rna N/A N/A N/A 38185325
    869035 8t5h:R (3.3) BS01 rna N/A N/A N/A 38185325
    869036 8t5h:S (3.3) BS01 rna N/A N/A P61175 38185325
    869037 8t5h:T (3.3) BS01 rna N/A N/A N/A 38185325
    869038 8t5h:U (3.3) BS01 rna N/A N/A N/A 38185325
    869039 8t5h:V (3.3) BS01 rna N/A N/A N/A 38185325
    869040 8t5h:W (3.3) BS01 rna N/A N/A C3SSG7 38185325
    869041 8t5h:W (3.3) BS02 rna N/A N/A C3SSG7 38185325
    869042 8t5h:X (3.3) BS01 rna N/A N/A A0A0E2KZD0 38185325
    869043 8t5h:Y (3.3) BS01 rna N/A N/A N/A 38185325
    869044 8t5h:Z (3.3) BS01 rna N/A N/A P0AG51 38185325
    869045 8t5h:b (3.3) BS01 rna N/A N/A N/A 38185325
    869046 8t5h:b (3.3) BS02 rna N/A N/A N/A 38185325
    869047 8t5h:c (3.3) BS01 rna N/A N/A C3SR62 38185325
    869048 8t5h:d (3.3) BS01 rna N/A N/A N/A 38185325
    869049 8t5h:d (3.3) BS02 rna N/A N/A N/A 38185325
    869050 8t5h:e (3.3) BS01 rna N/A N/A P02358 38185325
    869051 8t5h:f (3.3) BS01 rna N/A N/A P02359 38185325
    869052 8t5h:g (3.3) BS01 rna N/A N/A A0A828U358 38185325
    869053 8t5h:h (3.3) BS01 rna N/A N/A N/A 38185325
    869054 8t5h:h (3.3) BS02 rna N/A N/A N/A 38185325
    869055 8t5h:i (3.3) BS01 rna N/A N/A A0A0H3EQD3 38185325
    869056 8t5h:j (3.3) BS01 rna N/A N/A P0A7R9 38185325
    869057 8t5h:k (3.3) BS01 rna N/A N/A N/A 38185325
    869058 8t5h:l (3.3) BS01 rna N/A N/A S1P5F8 38185325
    869059 8t5h:l (3.3) BS02 rna N/A N/A S1P5F8 38185325
    869060 8t5h:m (3.3) BS01 rna N/A N/A B7M1M1 38185325
    869061 8t5h:n (3.3) BS01 rna N/A N/A N/A 38185325
    869062 8t5h:n (3.3) BS02 rna N/A N/A N/A 38185325
    869063 8t5h:o (3.3) BS01 rna N/A N/A C3SYP2 38185325
    869064 8t5h:p (3.3) BS01 rna N/A N/A N/A 38185325
    869065 8t5h:q (3.3) BS01 rna N/A N/A W1EY92 38185325
    869066 8t5h:r (3.3) BS01 rna N/A N/A A0A7U9LGZ0 38185325
    869067 8t5h:s (3.3) BS01 rna N/A N/A C3TRH7 38185325
    869068 8t5i:A (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    869069 8t5i:B (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    869070 8t5j:A (1.55) BS01 MG ? N/A B0TX44 N/A
    869071 8t5k:B (1.95) BS01 YGI ? GO:0002218 ... Q86WV6 37425806
    869072 8t5l:B (2.01) BS01 1SY ? GO:0002218 ... Q86WV6 37425806
    869073 8t5m:A (1.79) BS01 YIF ? GO:0005085 ... Q07890 38156904
    869074 8t5n:A (1.65) BS01 CA 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    869075 8t5n:A (1.65) BS02 AMP 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    869076 8t5p:A (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    869077 8t5p:B (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    869078 8t5p:D (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    869079 8t5q:A (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    869080 8t5q:B (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    869081 8t5q:D (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    869082 8t5r:A (2.12) BS01 6LH ? GO:0005085 ... Q07890 38156904
    869083 8t5s:A (2.9) BS01 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    869084 8t5s:A (2.9) BS02 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    869085 8t5s:A (2.9) BS03 ZN 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    869086 8t5s:A (2.9) BS04 ADP 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    869087 8t5u:A (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    869088 8t5u:A (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    869089 8t5u:B (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    869090 8t5u:B (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    869091 8t5u:C (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    869092 8t5u:C (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    869093 8t5u:D (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    869094 8t5u:D (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    869095 8t5u:E (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    869096 8t5u:E (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    869097 8t5u:F (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    869098 8t5u:F (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    869099 8t5u:G (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    869100 8t5u:G (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    869101 8t5v:A (1.79) BS01 MN N/A N/A C3W5S0 38190441
    869102 8t5v:A (1.79) BS02 MN N/A N/A C3W5S0 38190441
    869103 8t5v:A (1.79) BS03 E4Z N/A N/A C3W5S0 38190441
    869104 8t5w:A (1.65) BS01 MN 3.1.-.- N/A C3W5S0 38190441
    869105 8t5w:A (1.65) BS02 MN 3.1.-.- N/A C3W5S0 38190441
    869106 8t5w:A (1.65) BS03 E4Z 3.1.-.- N/A C3W5S0 38190441
    869107 8t5w:A (1.65) BS04 E4Z 3.1.-.- N/A C3W5S0 38190441
    869108 8t5y:A (1.44) BS01 CMP N/A GO:0003677 ... N/A 37945601
    869109 8t5z:A (2.03) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869110 8t5z:A (2.03) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869111 8t65:A (2.09) BS01 rna ? N/A D5BXZ3 38200316
    869112 8t65:B (2.09) BS01 rna ? N/A D5BXZ3 38200316
    869113 8t66:A (1.85) BS01 rna ? N/A D5BXZ3 38200316
    869114 8t66:B (1.85) BS01 rna ? N/A D5BXZ3 38200316
    869115 8t67:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869116 8t67:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869117 8t69:A (2.89) BS01 YHL ? GO:0001975 ... Q05940 37914936
    869118 8t6a:A (3.17) BS01 YHR ? GO:0001975 ... Q05940 37914936
    869119 8t6b:A (3.72) BS01 SRO ? GO:0001975 ... Q05940 37914936
    869120 8t6d:A (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    869121 8t6d:B (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    869122 8t6f:A (1.56) BS01 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    869123 8t6f:A (1.56) BS02 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    869124 8t6f:A (1.56) BS03 YI7 N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    869125 8t6g:A (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    869126 8t6g:B (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    869127 8t6h:A (1.981) BS01 ZN N/A N/A O96935 N/A
    869128 8t6h:A (1.981) BS02 MG N/A N/A O96935 N/A
    869129 8t6j:A (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    869130 8t6j:B (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    869131 8t6l:A (3.3) BS01 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    869132 8t6l:A (3.3) BS02 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    869133 8t6l:A (3.3) BS03 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    869134 8t6l:A (3.3) BS04 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    869135 8t6l:A (3.3) BS05 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    869136 8t6l:A (3.3) BS06 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    869137 8t6l:A (3.3) BS07 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    869138 8t6l:A (3.3) BS08 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869139 8t6l:A (3.3) BS09 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869140 8t6l:A (3.3) BS10 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869141 8t6l:A (3.3) BS11 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869142 8t6l:A (3.3) BS12 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869143 8t6l:A (3.3) BS13 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869144 8t6l:A (3.3) BS14 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869145 8t6l:A (3.3) BS15 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    869146 8t6l:A (3.3) BS16 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    869147 8t6l:A (3.3) BS17 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    869148 8t6l:A (3.3) BS18 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    869149 8t6l:A (3.3) BS19 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    869150 8t6o:A (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869151 8t6o:A (3.1) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869152 8t6o:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869153 8t6p:A (3.15) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869154 8t6p:A (3.15) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869155 8t6p:A (3.15) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869156 8t6s:A (3.28) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869157 8t6s:A (3.28) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869158 8t6s:A (3.28) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869159 8t6t:A (3.04) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869160 8t6t:A (3.04) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869161 8t6t:A (3.04) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869162 8t6u:A (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    869163 8t6u:A (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    869164 8t6u:A (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    869165 8t6u:B (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    869166 8t6u:B (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    869167 8t6u:B (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    869168 8t6v:A (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    869169 8t6v:A (2.95) BS02 Y01 ? GO:0005452 ... P02730 37679563
    869170 8t6v:A (2.95) BS03 CLR ? GO:0005452 ... P02730 37679563
    869171 8t6v:B (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    869172 8t6v:B (2.95) BS02 CLR ? GO:0005452 ... P02730 37679563
    869173 8t6x:A (3.08) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869174 8t6x:A (3.08) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869175 8t6x:A (3.08) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869176 8t6x:A (3.08) BS04 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869177 8t6x:A (3.08) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869178 8t6y:A (2.88) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869179 8t6y:A (2.88) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869180 8t6y:A (2.88) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    869181 8t6z:A (1.91) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869182 8t6z:A (1.91) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869183 8t6z:A (1.91) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    869184 8t70:A (1.892) BS01 peptide 2.5.1.58
    2.5.1.59    		 GO:0004659 ... J9VSJ6 N/A
    869185 8t70:B (1.892) BS01 peptide 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    869186 8t70:B (1.892) BS02 ZN 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    869187 8t70:B (1.892) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    869188 8t70:B (1.892) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    869189 8t70:B (1.892) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    869190 8t70:B (1.892) BS06 FII 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    869191 8t70:B (1.892) BS07 BT6 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    869192 8t71:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    869193 8t71:B (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    869194 8t72:A (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869195 8t72:A (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    869196 8t72:B (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869197 8t72:B (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    869198 8t72:C (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    869199 8t73:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    869200 8t73:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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